FC925765

Overview
NameFC925765
Unique NameFC925765
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length630
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC925765 vs. ExPASy Swiss-Prot
Match: CHIB_VITVI (Basic endochitinase OS=Vitis vinifera GN=CHIT1B PE=2 SV=1)

HSP 1 Score: 174.096 bits (440), Expect = 7.296e-45
Identity = 80/145 (55.17%), Postives = 100/145 (68.97%), Query Frame = 1
Query:  100 CGSGV-VCGERDTGHGTDGGELGKIISREMFEDLLPYRNDVRCPARGFYTYDAFIEAAKAFPAFGNSGNETMRTREIAAFFAQTGHETTGGWRDAPGGEYAWGYCFISEISPPSPYC--NLNYPCRG--KYYGRGPIQLTWNYNY 519
            CG+    CG       +  G++G++I+R MF D+L +RN+  CP +GFYTYDAFI AAKAFP FG +G+ T R REIAAF AQT HETTGGW  AP G YAWGYC++ E   P  YC  +  +PC    KYYGRGPIQ+++NYNY
Sbjct:   44 CGNTADYCGSGCQSQCSSTGDIGQLITRSMFNDMLKHRNEGSCPGKGFYTYDAFIAAAKAFPGFGTTGDTTTRKREIAAFLAQTSHETTGGWASAPDGPYAWGYCYLREQGSPGAYCVPSAQWPCAAGRKYYGRGPIQISYNYNY 188          

HSP 2 Score: 26.5646 bits (57), Expect = 7.296e-45
Identity = 10/14 (71.43%), Postives = 12/14 (85.71%), Query Frame = 2
Query:  581 ATDPVLSFKSAIWF 622
            ATD V+SFK+A WF
Sbjct:  207 ATDAVISFKTAFWF 220          
BLAST of FC925765 vs. ExPASy Swiss-Prot
Match: CHI6_POPTR (Acidic endochitinase WIN6 OS=Populus trichocarpa GN=WIN6 PE=2 SV=2)

HSP 1 Score: 170.629 bits (431), Expect = 9.499e-45
Identity = 85/137 (62.04%), Postives = 97/137 (70.80%), Query Frame = 1
Query:  121 GERDTGHGTDGGELGKIISREMFEDLLPYRNDVRCPARGFYTYDAFIEAAKAFPAFGNSGNETMRTREIAAFFAQTGHETTGGWRDAPGGEYAWGYCFISEISPPSPYC--NLNYPC-RGKYY-GRGPIQLTWNYNY 519
            G  D G   D G L  II +  F+ LL +RND RCPA GFYTY+AFI AAK FP FGN+G++ MR REIAAF  QT HETTGGW DAP G YAWGYC++ EI+   PYC  + NY C  GK Y GRGPIQL+WNYNY
Sbjct:   76 GGDDGGGDGDDGYLSDIIPKSKFDALLKFRNDARCPAAGFYTYNAFISAAKEFPDFGNTGDDLMRKREIAAFLGQTSHETTGGWPDAPCGPYAWGYCYLKEIN-CQPYCDPSSNYQCVAGKQYCGRGPIQLSWNYNY 211          

HSP 2 Score: 29.6462 bits (65), Expect = 9.499e-45
Identity = 11/13 (84.62%), Postives = 13/13 (100.00%), Query Frame = 2
Query:  584 TDPVLSFKSAIWF 622
            TDPV+SFK+AIWF
Sbjct:  231 TDPVISFKTAIWF 243          
BLAST of FC925765 vs. ExPASy Swiss-Prot
Match: CHI2_BRANA (Endochitinase CH25 OS=Brassica napus PE=2 SV=1)

HSP 1 Score: 171.785 bits (434), Expect = 2.741e-44
Identity = 78/126 (61.90%), Postives = 92/126 (73.02%), Query Frame = 1
Query:  154 GELGKIISREMFEDLLPYRNDVRCPARGFYTYDAFIEAAKAFPAFGNSGNETMRTREIAAFFAQTGHETTGGWRDAPGGEYAWGYCFISEISPPSPYC--NLNYPCRG--KYYGRGPIQLTWNYNY 519
            G+L  IISR  F+D+L +RND  CPARGFYTYDAFI AAK+FP FG +G+   R +EIAAFF QT HETTGGW  AP G Y+WGYCF  E +P S YC  +  +PC     YYGRGP+QL+WNYNY
Sbjct:   69 GDLSGIISRSQFDDMLKHRNDNACPARGFYTYDAFINAAKSFPGFGTTGDTATRKKEIAAFFGQTSHETTGGWATAPDGPYSWGYCFKQEQNPSSNYCSPSAEWPCASGKSYYGRGPMQLSWNYNY 194          

HSP 2 Score: 26.9498 bits (58), Expect = 2.741e-44
Identity = 9/14 (64.29%), Postives = 13/14 (92.86%), Query Frame = 2
Query:  581 ATDPVLSFKSAIWF 622
            + DPV++FK+AIWF
Sbjct:  213 SNDPVIAFKAAIWF 226          
BLAST of FC925765 vs. ExPASy Swiss-Prot
Match: CHIT_PHAVU (Endochitinase OS=Phaseolus vulgaris PE=1 SV=1)

HSP 1 Score: 168.703 bits (426), Expect = 7.904e-44
Identity = 81/144 (56.25%), Postives = 99/144 (68.75%), Query Frame = 1
Query:  100 CGSGVVCGERDTGHGTDGGELGKIISREMFEDLLPYRNDVRCPARGFYTYDAFIEAAKAFPAFGNSGNETMRTREIAAFFAQTGHETTGGWRDAPGGEYAWGYCFISEISPPSPYCNL--NYPCR--GKYYGRGPIQLTWNYNY 519
            CG G  C  +  G      +L  +ISR  F+ +L +RND  CPA+GFYTYDAFI AAKA+P+FGN+G+   R REIAAF  QT HETTGGW  AP G YAWGYCF+ E + PS YC+    +PC    +YYGRGPIQ++WNYNY
Sbjct:   58 CGPG--CQSQCGGPSPAPTDLSALISRSTFDQMLKHRNDGACPAKGFYTYDAFIAAAKAYPSFGNTGDTATRKREIAAFLGQTSHETTGGWATAPDGPYAWGYCFVRERN-PSTYCSATPQFPCAPGQQYYGRGPIQISWNYNY 198          

HSP 2 Score: 28.4906 bits (62), Expect = 7.904e-44
Identity = 11/14 (78.57%), Postives = 13/14 (92.86%), Query Frame = 2
Query:  581 ATDPVLSFKSAIWF 622
            ATD V+SFKSA+WF
Sbjct:  217 ATDSVISFKSALWF 230          
BLAST of FC925765 vs. ExPASy Swiss-Prot
Match: CHIT_CARPA (Endochitinase OS=Carica papaya PE=1 SV=1)

HSP 1 Score: 169.088 bits (427), Expect = 1.034e-43
Identity = 77/122 (63.11%), Postives = 94/122 (77.05%), Query Frame = 1
Query:  166 KIISREMFEDLLPYRNDVRCPARGFYTYDAFIEAAKAFPAFGNSGNETMRTREIAAFFAQTGHETTGGWRDAPGGEYAWGYCFISEISPPSPYC--NLNYPCR-GK-YYGRGPIQLTWNYNY 519
            KIISR MF+ +L +RN+  CPA+GFYTYDAF+ AAK+FP+FG +G+  +R RE+AAF  QT HETTGGW  AP G YAWGYCF+ E +P S YC  +  YPC  GK YYGRGP+QL+WNYNY
Sbjct:    4 KIISRSMFDQMLKHRNNPACPAKGFYTYDAFLAAAKSFPSFGTTGSTDVRKRELAAFLGQTSHETTGGWPSAPDGPYAWGYCFLKERNPSSNYCAPSPRYPCAPGKSYYGRGPLQLSWNYNY 125          

HSP 2 Score: 27.7202 bits (60), Expect = 1.034e-43
Identity = 11/14 (78.57%), Postives = 13/14 (92.86%), Query Frame = 2
Query:  581 ATDPVLSFKSAIWF 622
            ATD VLSFK+A+WF
Sbjct:  144 ATDRVLSFKTALWF 157          
BLAST of FC925765 vs. ExPASy Swiss-Prot
Match: CHI5_PHAVU (Endochitinase CH5B OS=Phaseolus vulgaris PE=3 SV=1)

HSP 1 Score: 167.162 bits (422), Expect = 2.280e-43
Identity = 82/149 (55.03%), Postives = 100/149 (67.11%), Query Frame = 1
Query:  100 CGS-----GVVCGERDTGHGTDGGELGKIISREMFEDLLPYRNDVRCPARGFYTYDAFIEAAKAFPAFGNSGNETMRTREIAAFFAQTGHETTGGWRDAPGGEYAWGYCFISEISPPSPYCNL--NYPCR--GKYYGRGPIQLTWNYNY 519
            CGS     G  C  +  G      +L  +ISR  F+ +L +RND  CPA+GFYTYDAFI AAKA+P+FGN+G+   R REIAAF  QT HETTGGW  AP G YAWGYCF+ E + PS YC+    +PC    +YYGRGPIQ++WNYNY
Sbjct:   50 CGSTTDYCGKDCQSQCGGPSPAPTDLSALISRSTFDQVLKHRNDGACPAKGFYTYDAFIAAAKAYPSFGNTGDTATRKREIAAFLGQTSHETTGGWATAPDGPYAWGYCFVRERN-PSAYCSATPQFPCAPGQQYYGRGPIQISWNYNY 197          

HSP 2 Score: 28.4906 bits (62), Expect = 2.280e-43
Identity = 11/14 (78.57%), Postives = 13/14 (92.86%), Query Frame = 2
Query:  581 ATDPVLSFKSAIWF 622
            ATD V+SFKSA+WF
Sbjct:  216 ATDSVISFKSALWF 229          
BLAST of FC925765 vs. ExPASy Swiss-Prot
Match: CHI2_TOBAC (Endochitinase B OS=Nicotiana tabacum GN=CHN50 PE=1 SV=1)

HSP 1 Score: 164.081 bits (414), Expect = 2.280e-43
Identity = 81/146 (55.48%), Postives = 99/146 (67.81%), Query Frame = 1
Query:  100 CGSGVVCGERDTGHGTD--GGELGKIISREMFEDLLPYRNDVRCPARGFYTYDAFIEAAKAFPAFGNSGNETMRTREIAAFFAQTGHETTGGWRDAPGGEYAWGYCFISEISPPSPYCNLN--YPCR--GKYYGRGPIQLTWNYNY 519
            CG G  C  +  G  T   GG+LG IIS  MF+ +L +RND  C  +GFY+Y+AFI AA++FP FG SG+ T R REIAAFFAQT HETTGGW  AP G YAWGYC++ E   P  YC  +  +PC    KY+GRGPIQ++ NYNY
Sbjct:   54 CGPGN-CQSQCPGGPTPPGGGDLGSIISSSMFDQMLKHRNDNACQGKGFYSYNAFINAARSFPGFGTSGDTTARKREIAAFFAQTSHETTGGWATAPDGPYAWGYCWLREQGSPGDYCTPSGQWPCAPGRKYFGRGPIQISHNYNY 198          

HSP 2 Score: 31.5722 bits (70), Expect = 2.280e-43
Identity = 12/14 (85.71%), Postives = 14/14 (100.00%), Query Frame = 2
Query:  581 ATDPVLSFKSAIWF 622
            ATDPV+SFKSA+WF
Sbjct:  217 ATDPVISFKSALWF 230          
BLAST of FC925765 vs. ExPASy Swiss-Prot
Match: CHI1_TOBAC (Endochitinase A OS=Nicotiana tabacum GN=CHN48 PE=1 SV=2)

HSP 1 Score: 163.31 bits (412), Expect = 3.871e-43
Identity = 75/127 (59.06%), Postives = 92/127 (72.44%), Query Frame = 1
Query:  151 GGELGKIISREMFEDLLPYRNDVRCPARGFYTYDAFIEAAKAFPAFGNSGNETMRTREIAAFFAQTGHETTGGWRDAPGGEYAWGYCFISEISPPSPYCNLN--YPCR--GKYYGRGPIQLTWNYNY 519
            GG+LG IIS  MF+ +L +RND  C  +GFY+Y+AFI AA++FP FG SG+ T R REIAAFFAQT HETTGGW  AP G YAWGYC++ E   P  YC  +  +PC    KY+GRGPIQ++ NYNY
Sbjct:   77 GGDLGSIISSSMFDQMLKHRNDNACQGKGFYSYNAFINAARSFPGFGTSGDTTARKREIAAFFAQTSHETTGGWATAPDGPYAWGYCWLREQGSPGDYCTPSGQWPCAPGRKYFGRGPIQISHNYNY 203          

HSP 2 Score: 31.5722 bits (70), Expect = 3.871e-43
Identity = 12/14 (85.71%), Postives = 14/14 (100.00%), Query Frame = 2
Query:  581 ATDPVLSFKSAIWF 622
            ATDPV+SFKSA+WF
Sbjct:  222 ATDPVISFKSALWF 235          
BLAST of FC925765 vs. ExPASy Swiss-Prot
Match: CHIB_ARATH (Basic endochitinase B OS=Arabidopsis thaliana GN=CHI-B PE=1 SV=3)

HSP 1 Score: 169.088 bits (427), Expect = 6.571e-43
Identity = 75/126 (59.52%), Postives = 92/126 (73.02%), Query Frame = 1
Query:  154 GELGKIISREMFEDLLPYRNDVRCPARGFYTYDAFIEAAKAFPAFGNSGNETMRTREIAAFFAQTGHETTGGWRDAPGGEYAWGYCFISEISPPSPYC--NLNYPCRG--KYYGRGPIQLTWNYNY 519
            G+L  IIS   F+D+L +RND  CPARGFYTY+AFI AAK+FP FG +G+   R +E+AAFF QT HETTGGW  AP G Y+WGYCF  E +P S YC  +  +PC    +YYGRGP+QL+WNYNY
Sbjct:   84 GDLSGIISSSQFDDMLKHRNDAACPARGFYTYNAFITAAKSFPGFGTTGDTATRKKEVAAFFGQTSHETTGGWATAPDGPYSWGYCFKQEQNPASDYCEPSATWPCASGKRYYGRGPMQLSWNYNY 209          

HSP 2 Score: 25.0238 bits (53), Expect = 6.571e-43
Identity = 9/14 (64.29%), Postives = 12/14 (85.71%), Query Frame = 2
Query:  581 ATDPVLSFKSAIWF 622
            A D V++FK+AIWF
Sbjct:  228 ANDAVIAFKAAIWF 241          
BLAST of FC925765 vs. ExPASy Swiss-Prot
Match: CHI1_THECC (Endochitinase 1 OS=Theobroma cacao GN=CHIA1 PE=2 SV=1)

HSP 1 Score: 163.31 bits (412), Expect = 1.896e-42
Identity = 82/140 (58.57%), Postives = 101/140 (72.14%), Query Frame = 1
Query:  118 CGERDTGHGTDGGELGKIISREMFEDLLPYRNDVRCPARGFYTYDAFIEAAKAFPAFGNSGNETMRTREIAAFFAQTGHETTG--GWRDAPGGEYAWGYCFISEISPPSPYC--NLNYPCR-GK-YYGRGPIQLTWNYNY 519
            C  + +G G D G L  +I+RE F+ +L +RND  CPARGFYTYDAFI AAK+FPAF  +G++  R RE+AAF AQT HETTG  GW  AP G Y WGYC+  E++ P+ YC  + NYPC  GK Y+GRGP+QLTWNYNY
Sbjct:   58 CQSQCSGSGGDTGGLDSLITRERFDQMLLHRNDGGCPARGFYTYDAFIAAAKSFPAFATTGDDATRKREVAAFLAQTSHETTGGAGWA-APDGPYTWGYCYNRELN-PADYCQWDPNYPCAPGKQYFGRGPMQLTWNYNY 195          

HSP 2 Score: 29.261 bits (64), Expect = 1.896e-42
Identity = 11/14 (78.57%), Postives = 12/14 (85.71%), Query Frame = 2
Query:  581 ATDPVLSFKSAIWF 622
            ATDP +SFKSA WF
Sbjct:  214 ATDPTISFKSAFWF 227          
The following BLAST results are available for this feature:
BLAST of FC925765 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 55
Match NameE-valueIdentityDescription
CHIB_VITVI7.296e-4555.17Basic endochitinase OS=Vitis vinifera GN=CHIT1B PE... [more]
CHI6_POPTR9.499e-4562.04Acidic endochitinase WIN6 OS=Populus trichocarpa G... [more]
CHI2_BRANA2.741e-4461.90Endochitinase CH25 OS=Brassica napus PE=2 SV=1[more]
CHIT_PHAVU7.904e-4456.25Endochitinase OS=Phaseolus vulgaris PE=1 SV=1[more]
CHIT_CARPA1.034e-4363.11Endochitinase OS=Carica papaya PE=1 SV=1[more]
CHI5_PHAVU2.280e-4355.03Endochitinase CH5B OS=Phaseolus vulgaris PE=3 SV=1[more]
CHI2_TOBAC2.280e-4355.48Endochitinase B OS=Nicotiana tabacum GN=CHN50 PE=1... [more]
CHI1_TOBAC3.871e-4359.06Endochitinase A OS=Nicotiana tabacum GN=CHN48 PE=1... [more]
CHIB_ARATH6.571e-4359.52Basic endochitinase B OS=Arabidopsis thaliana GN=C... [more]
CHI1_THECC1.896e-4258.57Endochitinase 1 OS=Theobroma cacao GN=CHIA1 PE=2 S... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP11YK09FM1 TF Citrus clementina cDNA clone KN0AAP11YK09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925765 ID=FC925765; Name=FC925765; organism=Citrus clementina; type=EST; length=630bp
ATTGATATCATCTTTGTTGCTTTCAAAATGAGGCTTATTGCGTCCTTACT
AGTTTTCTCTCTAGTTTTATCTTTCGTACTAGGAGGCTCAGCACGGAATT
GTGGAAGCGGCGTTGTGTGCGGTGAACGTGATACCGGCCACGGGACGGAT
GGCGGTGAACTGGGCAAGATCATCTCAAGGGAGATGTTTGAAGACTTGCT
TCCGTATAGAAATGATGTACGATGCCCTGCCAGAGGCTTCTACACTTATG
ATGCTTTTATAGAGGCAGCCAAAGCTTTTCCAGCCTTTGGTAACTCTGGA
AATGAAACCATGCGTACAAGAGAAATTGCTGCCTTTTTTGCCCAAACTGG
CCATGAAACTACTGGGGGATGGCGCGATGCACCTGGTGGAGAATATGCTT
GGGGATATTGCTTTATAAGCGAAATTAGCCCTCCGTCCCCCTACTGTAAT
CTTAACTATCCATGTCGAGGGAAGTACTATGGCCGAGGTCCAATTCAACT
CACTTGGAATTACAATTACTTACGGTGCCGGAGAAGACCTAGGGCTAGGA
GAGGAGTTGTTGAACAATCCAGACCTTCTTGCTACTGATCCAGTACTATC
ATTCAAGTCAGCAATCTGGTTTCTGGATGA
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