FC925769

Overview
NameFC925769
Unique NameFC925769
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length480
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC925769 vs. ExPASy Swiss-Prot
Match: SMT3_ARATH (Ubiquitin-like protein SMT3 OS=Arabidopsis thaliana GN=SMT3 PE=1 SV=2)

HSP 1 Score: 167.933 bits (424), Expect = 2.040e-41
Identity = 82/92 (89.13%), Postives = 86/92 (93.48%), Query Frame = 3
Query:   72 QEEDKIPVDQSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGRRLRGEQTPDELEMEDGDEIDAMLHQTGGALG 347
            QEEDK P D  AHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSV++NSIAFLFDGRRLR EQTPDEL+MEDGDEIDAMLHQTGG+ G
Sbjct:    5 QEEDKKPGDGGAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVDMNSIAFLFDGRRLRAEQTPDELDMEDGDEIDAMLHQTGGSGG 96          
BLAST of FC925769 vs. ExPASy Swiss-Prot
Match: SMT3_ORYSJ (Ubiquitin-like protein SMT3 OS=Oryza sativa subsp. japonica GN=SMT3 PE=3 SV=1)

HSP 1 Score: 161.77 bits (408), Expect = 1.462e-39
Identity = 81/93 (87.10%), Postives = 84/93 (90.32%), Query Frame = 3
Query:   75 EEDKIPVDQS---AHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGRRLRGEQTPDELEMEDGDEIDAMLHQTGGAL 344
            EEDK P       AHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSV++N+IAFLFDGRRLRGEQTPDELEMEDGDEIDAMLHQTGG L
Sbjct:    6 EEDKKPAGGEGGGAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVDMNAIAFLFDGRRLRGEQTPDELEMEDGDEIDAMLHQTGGCL 98          
BLAST of FC925769 vs. ExPASy Swiss-Prot
Match: PMT3_SCHPO (Ubiquitin-like protein pmt3/smt3 OS=Schizosaccharomyces pombe GN=pmt3 PE=1 SV=2)

HSP 1 Score: 105.531 bits (262), Expect = 1.243e-22
Identity = 48/77 (62.34%), Postives = 60/77 (77.92%), Query Frame = 3
Query:  108 HINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGRRLRGEQTPDELEMEDGDEIDAMLHQTGG 338
            HINLKV GQD NEVFF+IK++T+  KLM  YC RQ   +NS+ FL DG R+R +QTP EL+MEDGD+I+A+L Q GG
Sbjct:   35 HINLKVVGQDNNEVFFKIKKTTEFSKLMKIYCARQGKSMNSLRFLVDGERIRPDQTPAELDMEDGDQIEAVLEQLGG 111          
BLAST of FC925769 vs. ExPASy Swiss-Prot
Match: SUMO3_MOUSE (Small ubiquitin-related modifier 3 OS=Mus musculus GN=Sumo3 PE=2 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 6.385e-19
Identity = 45/85 (52.94%), Postives = 56/85 (65.88%), Query Frame = 3
Query:   99 QSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGRRLRGEQTPDELEMEDGDEIDAMLHQTGGALGSG 353
            ++ HINLKV GQDG+ V F+IKR T L KLM AYC+RQ + +  I F FDG+ +    TP +LEMED D ID    QTGG+   G
Sbjct:   13 ENDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQTGGSASRG 97          
BLAST of FC925769 vs. ExPASy Swiss-Prot
Match: SMO2A_XENLA (Small ubiquitin-related modifier 2-A OS=Xenopus laevis GN=sumo2-A PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 6.385e-19
Identity = 44/88 (50.00%), Postives = 58/88 (65.91%), Query Frame = 3
Query:   78 EDKIPVDQSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGRRLRGEQTPDELEMEDGDEIDAMLHQTGGA 341
            ++ +  + + HINLKV GQDG+ V F+IKR T L KLM AYC+RQ + +  I F FDG+ +    TP +LEMED D ID    QTGG+
Sbjct:    7 KEGVKTENNDHINLKVAGQDGSVVQFKIKRQTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQTGGS 94          
BLAST of FC925769 vs. ExPASy Swiss-Prot
Match: SUMO3_XENTR (Small ubiquitin-related modifier 3 OS=Xenopus tropicalis GN=sumo3 PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 8.339e-19
Identity = 45/80 (56.25%), Postives = 54/80 (67.50%), Query Frame = 3
Query:   99 QSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGRRLRGEQTPDELEMEDGDEIDAMLHQTGG 338
            ++ HINLKV GQDG+ V F+IKR T L KLM AYCDRQ + +  I F FDG+ +    TP +LEMED D ID    QTGG
Sbjct:   13 ENDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCDRQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQTGG 92          
BLAST of FC925769 vs. ExPASy Swiss-Prot
Match: SUMO3_XENLA (Small ubiquitin-related modifier 3 OS=Xenopus laevis GN=sumo3 PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 8.339e-19
Identity = 45/80 (56.25%), Postives = 54/80 (67.50%), Query Frame = 3
Query:   99 QSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGRRLRGEQTPDELEMEDGDEIDAMLHQTGG 338
            ++ HINLKV GQDG+ V F+IKR T L KLM AYCDRQ + +  I F FDG+ +    TP +LEMED D ID    QTGG
Sbjct:   13 ENDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCDRQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQTGG 92          
BLAST of FC925769 vs. ExPASy Swiss-Prot
Match: SUMO3_BOVIN (Small ubiquitin-related modifier 3 OS=Bos taurus GN=SUMO3 PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 8.339e-19
Identity = 48/91 (52.75%), Postives = 59/91 (64.84%), Query Frame = 3
Query:   99 QSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGRRLRGEQTPDELEMEDGDEIDAMLHQTGGA------LGSG 353
            ++ HINLKV GQDG+ V F+IKR T L KLM AYC+RQ + +  I F FDG+ +    TP +LEMED D ID    QTGG+      LGSG
Sbjct:   13 ENDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQTGGSRVASCLLGSG 103          
BLAST of FC925769 vs. ExPASy Swiss-Prot
Match: SUMO2_XENTR (Small ubiquitin-related modifier 2 OS=Xenopus tropicalis GN=sumo2 PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 8.339e-19
Identity = 44/88 (50.00%), Postives = 58/88 (65.91%), Query Frame = 3
Query:   78 EDKIPVDQSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGRRLRGEQTPDELEMEDGDEIDAMLHQTGGA 341
            ++ +  + + HINLKV GQDG+ V F+IKR T L KLM AYC+RQ + +  I F FDG+ +    TP +LEMED D ID    QTGG+
Sbjct:    7 KEGVKTENNDHINLKVAGQDGSVVQFKIKRHTPLNKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQTGGS 94          
BLAST of FC925769 vs. ExPASy Swiss-Prot
Match: SMO2B_XENLA (Small ubiquitin-related modifier 2-B OS=Xenopus laevis GN=sumo2-B PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 8.339e-19
Identity = 44/88 (50.00%), Postives = 58/88 (65.91%), Query Frame = 3
Query:   78 EDKIPVDQSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGRRLRGEQTPDELEMEDGDEIDAMLHQTGGA 341
            ++ +  + + HINLKV GQDG+ V F+IKR T L KLM AYC+RQ + +  I F FDG+ +    TP +LEMED D ID    QTGG+
Sbjct:    7 KEGVKTENNDHINLKVAGQDGSVVQFKIKRHTPLNKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQTGGS 94          
The following BLAST results are available for this feature:
BLAST of FC925769 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 42
Match NameE-valueIdentityDescription
SMT3_ARATH2.040e-4189.13Ubiquitin-like protein SMT3 OS=Arabidopsis thalian... [more]
SMT3_ORYSJ1.462e-3987.10Ubiquitin-like protein SMT3 OS=Oryza sativa subsp.... [more]
PMT3_SCHPO1.243e-2262.34Ubiquitin-like protein pmt3/smt3 OS=Schizosaccharo... [more]
SUMO3_MOUSE6.385e-1952.94Small ubiquitin-related modifier 3 OS=Mus musculus... [more]
SMO2A_XENLA6.385e-1950.00Small ubiquitin-related modifier 2-A OS=Xenopus la... [more]
SUMO3_XENTR8.339e-1956.25Small ubiquitin-related modifier 3 OS=Xenopus trop... [more]
SUMO3_XENLA8.339e-1956.25Small ubiquitin-related modifier 3 OS=Xenopus laev... [more]
SUMO3_BOVIN8.339e-1952.75Small ubiquitin-related modifier 3 OS=Bos taurus G... [more]
SUMO2_XENTR8.339e-1950.00Small ubiquitin-related modifier 2 OS=Xenopus trop... [more]
SMO2B_XENLA8.339e-1950.00Small ubiquitin-related modifier 2-B OS=Xenopus la... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP8YP05FM1 TF Citrus clementina cDNA clone KN0AAP8YP05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925769 ID=FC925769; Name=FC925769; organism=Citrus clementina; type=EST; length=480bp
CAAAGAGAGGGCCCTTTCAATTCTAAGAACCTGTAAGGATGTCAGCGACC
GGTGGCGGCGGCGGCGGTGGTCAGGAGGAGGACAAGATTCCCGTCGATCA
GTCGGCGCACATTAACCTCAAAGTCAAGGGCCAGGATGGCAATGAGGTGT
TTTTTAGAATTAAGCGAAGCACCCAGTTGAAAAAGCTCATGAATGCCTAC
TGTGATCGGCAGTCGGTGGAGTTAAACTCTATTGCTTTCTTGTTTGATGG
GCGGAGACTCCGAGGAGAGCAGACTCCAGATGAGCTTGAGATGGAGGATG
GAGATGAAATTGATGCAATGCTGCATCAGACTGGAGGTGCGCTTGGAAGC
GGTTAGCTGCAGTTTGAAATATTTTGAGCATCGCTGGCGGACTTGATGTT
TGAGTTTTTTAAATTAGCCTATATCTATGGAAATATTACTGTAAATGATG
ACTTGGATCCTATAATTAACTTGAATTTAA
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