FC925770

Overview
NameFC925770
Unique NameFC925770
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length586
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC925770 vs. ExPASy Swiss-Prot
Match: RISB_ARATH (6,7-dimethyl-8-ribityllumazine synthase, chloroplastic OS=Arabidopsis thaliana GN=At2g44050 PE=2 SV=1)

HSP 1 Score: 224.557 bits (571), Expect = 5.783e-68
Identity = 107/128 (83.59%), Postives = 121/128 (94.53%), Query Frame = 3
Query:  111 KTTVRGALETFKKYSVKEENIDVVWVPGSFEIGVVAQQLGKSGKYTAVLCIGAVVRGDTTHYDAVANSAASGVLSAGMNSGVPCIFGVLTCDNMDQALNRAGGKSGNKGAEAALTAIEMASLFEHHLK 494
            K  + GA+ETFKKYSV+EE+I+V+WVPGSFEIGVVAQ LGKSGK+ AVLCIGAV+RGDTTHYDAVANSAASGVLSA +NSGVPCIFGVLTC++MDQALNR+GGK+GNKGAE ALTA+EMASLFEHHLK
Sbjct:  100 KLLLEGAIETFKKYSVREEDIEVIWVPGSFEIGVVAQNLGKSGKFHAVLCIGAVIRGDTTHYDAVANSAASGVLSASINSGVPCIFGVLTCEDMDQALNRSGGKAGNKGAETALTALEMASLFEHHLK 227          

HSP 2 Score: 54.6842 bits (130), Expect = 5.783e-68
Identity = 26/36 (72.22%), Postives = 31/36 (86.11%), Query Frame = 1
Query:    7 SSLQTEAVRHLTGFLTKNEGLRFAVVVARFNELVTK 114
            S +QT AVRH+TG L + EGLRFA+VVARFNE+VTK
Sbjct:   65 SFVQTAAVRHVTGSLIRGEGLRFAIVVARFNEVVTK 100          
BLAST of FC925770 vs. ExPASy Swiss-Prot
Match: RISB_SPIOL (6,7-dimethyl-8-ribityllumazine synthase, chloroplastic OS=Spinacia oleracea PE=1 SV=1)

HSP 1 Score: 214.542 bits (545), Expect = 4.378e-62
Identity = 101/125 (80.80%), Postives = 118/125 (94.40%), Query Frame = 3
Query:  120 VRGALETFKKYSVKEENIDVVWVPGSFEIGVVAQQLGKSGKYTAVLCIGAVVRGDTTHYDAVANSAASGVLSAGMNSGVPCIFGVLTCDNMDQALNRAGGKSGNKGAEAALTAIEMASLFEHHLK 494
            + GAL+TFKKYSV E+ IDVVWVPG++E+GV AQ LGKSGKY A++C+GAVV+GDT+HYDAV NSA+SGVLSAG+NSGVPC+FGVLTCDNMDQA+NRAGGK+GNKGAE+ALTAIEMASLFEHHLK
Sbjct:   98 MEGALDTFKKYSVNED-IDVVWVPGAYELGVTAQALGKSGKYHAIVCLGAVVKGDTSHYDAVVNSASSGVLSAGLNSGVPCVFGVLTCDNMDQAINRAGGKAGNKGAESALTAIEMASLFEHHLK 221          

HSP 2 Score: 45.0542 bits (105), Expect = 4.378e-62
Identity = 21/36 (58.33%), Postives = 27/36 (75.00%), Query Frame = 1
Query:    7 SSLQTEAVRHLTGFLTKNEGLRFAVVVARFNELVTK 114
            S + T AVR L G++TK +  RFA+VVARFNE VT+
Sbjct:   60 SFVVTNAVRELEGYVTKAQSFRFAIVVARFNEFVTR 95          
BLAST of FC925770 vs. ExPASy Swiss-Prot
Match: RISB_EXIS2 (6,7-dimethyl-8-ribityllumazine synthase OS=Exiguobacterium sibiricum (strain DSM 17290 / JCM 13490 / 255-15) GN=ribH PE=3 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 3.438e-36
Identity = 66/119 (55.46%), Postives = 89/119 (74.79%), Query Frame = 3
Query:  120 VRGALETFKKYSVKEENIDVVWVPGSFEIGVVAQQLGKSGKYTAVLCIGAVVRGDTTHYDAVANSAASGVLSAGMNSGVPCIFGVLTCDNMDQALNRAGGKSGNKGAEAALTAIEMASL 476
            V GA + F+++ V  + +D  WVPG+FEI +VA++L KSG Y AV+ +GAV+RG T+HYD V N  A GV  A   +GVP IFGVLT D+++QA+ RAG K+GNKG EAA++AIEMA+L
Sbjct:   30 VGGANDAFRRHGVAADAVDTAWVPGAFEIPLVAEKLAKSGNYDAVITLGAVIRGATSHYDYVCNEVAKGVAGASRETGVPIIFGVLTTDSIEQAVERAGTKAGNKGYEAAVSAIEMANL 148          

HSP 2 Score: 34.2686 bits (77), Expect = 3.438e-36
Identity = 17/23 (73.91%), Postives = 19/23 (82.61%), Query Frame = 1
Query:   43 GFLTKNEGLRFAVVVARFNELVT 111
            GFLT  EGLR A+V ARFNEL+T
Sbjct:    5 GFLT-GEGLRVAIVAARFNELIT 26          
BLAST of FC925770 vs. ExPASy Swiss-Prot
Match: RISB_PELTS (6,7-dimethyl-8-ribityllumazine synthase OS=Pelotomaculum thermopropionicum (strain DSM 13744 / JCM 10971 / SI) GN=ribH PE=3 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 1.068e-34
Identity = 63/119 (52.94%), Postives = 91/119 (76.47%), Query Frame = 3
Query:  126 GALETFKKYSVKEENIDVVWVPGSFEIGVVAQQLGKSGKYTAVLCIGAVVRGDTTHYDAVANSAASGVLSAGMNSGVPCIFGVLTCDNMDQALNRAGGKSGNKGAEAALTAIEMASLFE 482
            GAL+   ++ V +++I+V WVPG+FEI +VA+++  + KY AV+C+GAV+RG T H+D VA   A GV   G+ SGVP IFGV+T D+++QA+ RAG K+GNKG +AA+TAIEMA+L +
Sbjct:   34 GALDALNRHGVADQDIEVAWVPGAFEIPMVARKMASAMKYDAVICLGAVIRGATPHFDYVAGEVAKGVARIGLESGVPTIFGVITADSIEQAIERAGAKAGNKGWDAAVTAIEMANLMK 152          

HSP 2 Score: 29.261 bits (64), Expect = 1.068e-34
Identity = 13/26 (50.00%), Postives = 17/26 (65.38%), Query Frame = 1
Query:   34 HLTGFLTKNEGLRFAVVVARFNELVT 111
            HL G     +GLRF +V+ RFNE +T
Sbjct:    8 HLIG-----QGLRFGIVIGRFNEFIT 28          
BLAST of FC925770 vs. ExPASy Swiss-Prot
Match: RISB_CLOPS (6,7-dimethyl-8-ribityllumazine synthase OS=Clostridium perfringens (strain SM101 / Type A) GN=ribH PE=3 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 1.303e-34
Identity = 63/122 (51.64%), Postives = 95/122 (77.87%), Query Frame = 3
Query:  120 VRGALETFKKYSVKEENIDVVWVPGSFEIGVVAQQLGKSGKYTAVLCIGAVVRGDTTHYDAVANSAASGVLSAGMNSGVPCIFGVLTCDNMDQALNRAGGKSGNKGAEAALTAIEMASLFEH 485
            + GAL+ FK++ V+EENID+ WVPG+FEI ++A++L KSGKY  V+C+G V+RG T+HYD V    + G+ +  +++ VP IFG++T +N++QA+ RAG K+GNKG +AA+ AIEMA+L E+
Sbjct:   31 IGGALDAFKRHGVEEENIDLAWVPGAFEIPLIAKKLAKSGKYAGVVCLGTVIRGATSHYDYVCGEVSKGIANVSLDTEVPVIFGIVTTENIEQAIERAGTKAGNKGFDAAMAAIEMANLLEN 152          
BLAST of FC925770 vs. ExPASy Swiss-Prot
Match: RISB_CLOPE (6,7-dimethyl-8-ribityllumazine synthase OS=Clostridium perfringens GN=ribH PE=3 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 1.303e-34
Identity = 63/122 (51.64%), Postives = 95/122 (77.87%), Query Frame = 3
Query:  120 VRGALETFKKYSVKEENIDVVWVPGSFEIGVVAQQLGKSGKYTAVLCIGAVVRGDTTHYDAVANSAASGVLSAGMNSGVPCIFGVLTCDNMDQALNRAGGKSGNKGAEAALTAIEMASLFEH 485
            + GAL+ FK++ V+EENID+ WVPG+FEI ++A++L KSGKY  V+C+G V+RG T+HYD V    + G+ +  +++ VP IFG++T +N++QA+ RAG K+GNKG +AA+ AIEMA+L E+
Sbjct:   31 IGGALDAFKRHGVEEENIDLAWVPGAFEIPLIAKKLAKSGKYAGVVCLGTVIRGATSHYDYVCGEVSKGIANVSLDTEVPVIFGIVTTENIEQAIERAGTKAGNKGFDAAMAAIEMANLLEN 152          
BLAST of FC925770 vs. ExPASy Swiss-Prot
Match: RISB_ANOFW (6,7-dimethyl-8-ribityllumazine synthase OS=Anoxybacillus flavithermus (strain DSM 21510 / WK1) GN=ribH PE=3 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 1.393e-34
Identity = 67/117 (57.26%), Postives = 92/117 (78.63%), Query Frame = 3
Query:  126 GALETFKKYSVKEENIDVVWVPGSFEIGVVAQQLGKSGKYTAVLCIGAVVRGDTTHYDAVANSAASGVLSAGMNSGVPCIFGVLTCDNMDQALNRAGGKSGNKGAEAALTAIEMASL 476
            GAL+  K++ V+E++IDV WVPG+FEI +VA+++ +S KY AV+ +GAV+RG T+HYD V N  A G   A ++SGVP IFGVLT D ++QA+ RAG K+GNKG EAAL+AIEMA++
Sbjct:   33 GALDGLKRHGVEEQHIDVAWVPGAFEIPLVAKKMAESKKYDAVITLGAVIRGATSHYDYVCNEVAKGTSHAALSSGVPVIFGVLTTDTIEQAIERAGTKAGNKGWEAALSAIEMANV 149          

HSP 2 Score: 26.5646 bits (57), Expect = 1.393e-34
Identity = 10/16 (62.50%), Postives = 13/16 (81.25%), Query Frame = 1
Query:   64 GLRFAVVVARFNELVT 111
            GL+  +VVARFNE +T
Sbjct:   12 GLKIGIVVARFNEFIT 27          
BLAST of FC925770 vs. ExPASy Swiss-Prot
Match: RISB_ACTP7 (6,7-dimethyl-8-ribityllumazine synthase OS=Actinobacillus pleuropneumoniae serotype 7 (strain AP76) GN=ribH PE=3 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 1.814e-34
Identity = 64/119 (53.78%), Postives = 89/119 (74.79%), Query Frame = 3
Query:  126 GALETFKKYSVKEENIDVVWVPGSFEIGVVAQQLGKSGKYTAVLCIGAVVRGDTTHYDAVANSAASGVLSAGMNSGVPCIFGVLTCDNMDQALNRAGGKSGNKGAEAALTAIEMASLFE 482
            GA++T  ++   E NID  WVPG+FEI +VA+++  SGKY AV+C+G V+RG TTHYD V N AA G+ +  + +GVP IFGVLT +N++QA+ RAG K+GNKG+E AL AIEM ++ +
Sbjct:   33 GAIDTLVRHGADENNIDTAWVPGAFEIPLVAKKMATSGKYDAVICLGTVIRGSTTHYDYVCNEAAKGIGAVALETGVPVIFGVLTTENIEQAIERAGTKAGNKGSECALGAIEMVNVLK 151          

HSP 2 Score: 24.6386 bits (52), Expect = 1.814e-34
Identity = 11/24 (45.83%), Postives = 16/24 (66.67%), Query Frame = 1
Query:   37 LTGFLTKNEGLRFAVVVARFNELV 108
            +TG L    GL+F +V ARFN+ +
Sbjct:    4 ITGNLVAT-GLKFGIVTARFNDFI 26          
BLAST of FC925770 vs. ExPASy Swiss-Prot
Match: RISB_CLOB8 (6,7-dimethyl-8-ribityllumazine synthase OS=Clostridium beijerinckii (strain ATCC 51743 / NCIMB 8052) GN=ribH PE=3 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 1.814e-34
Identity = 61/119 (51.26%), Postives = 92/119 (77.31%), Query Frame = 3
Query:  120 VRGALETFKKYSVKEENIDVVWVPGSFEIGVVAQQLGKSGKYTAVLCIGAVVRGDTTHYDAVANSAASGVLSAGMNSGVPCIFGVLTCDNMDQALNRAGGKSGNKGAEAALTAIEMASL 476
            + GA++  K++ VKEE+ID+ WVPG+FEI ++A+++ KS KY  V+C+GAV++G T+HYD V +  + G+ S  + SG P IFGVLT + ++QA+ RAG K+GNKG E+A++AIEMA+L
Sbjct:   31 LEGAIDGLKRHGVKEEDIDIAWVPGAFEIPLIAKKMAKSPKYDGVICLGAVIKGSTSHYDYVCSEVSKGIASVSLESGKPVIFGVLTTNTIEQAIERAGTKAGNKGYESAVSAIEMANL 149          

HSP 2 Score: 27.7202 bits (60), Expect = 1.814e-34
Identity = 10/17 (58.82%), Postives = 14/17 (82.35%), Query Frame = 1
Query:   58 NEGLRFAVVVARFNELV 108
            +EGL+F +VV RFNE +
Sbjct:   10 SEGLKFGIVVGRFNEFI 26          
BLAST of FC925770 vs. ExPASy Swiss-Prot
Match: RISB_CLOP1 (6,7-dimethyl-8-ribityllumazine synthase OS=Clostridium perfringens (strain ATCC 13124 / NCTC 8237 / Type A) GN=ribH PE=3 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 2.903e-34
Identity = 62/122 (50.82%), Postives = 95/122 (77.87%), Query Frame = 3
Query:  120 VRGALETFKKYSVKEENIDVVWVPGSFEIGVVAQQLGKSGKYTAVLCIGAVVRGDTTHYDAVANSAASGVLSAGMNSGVPCIFGVLTCDNMDQALNRAGGKSGNKGAEAALTAIEMASLFEH 485
            + GAL+ FK++ V+E+NID+ WVPG+FEI ++A++L KSGKY  V+C+G V+RG T+HYD V    + G+ +  +++ VP IFG++T +N++QA+ RAG K+GNKG +AA+ AIEMA+L E+
Sbjct:   31 IDGALDAFKRHGVEEDNIDLAWVPGAFEIPLIAKKLAKSGKYAGVVCLGTVIRGATSHYDYVCGEVSKGIANVSLDTEVPVIFGIVTTENIEQAIERAGTKAGNKGFDAAMAAIEMANLLEN 152          
The following BLAST results are available for this feature:
BLAST of FC925770 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RISB_ARATH5.783e-6883.596,7-dimethyl-8-ribityllumazine synthase, chloropla... [more]
RISB_SPIOL4.378e-6280.806,7-dimethyl-8-ribityllumazine synthase, chloropla... [more]
RISB_EXIS23.438e-3655.466,7-dimethyl-8-ribityllumazine synthase OS=Exiguob... [more]
RISB_PELTS1.068e-3452.946,7-dimethyl-8-ribityllumazine synthase OS=Pelotom... [more]
RISB_CLOPS1.303e-3451.646,7-dimethyl-8-ribityllumazine synthase OS=Clostri... [more]
RISB_CLOPE1.303e-3451.646,7-dimethyl-8-ribityllumazine synthase OS=Clostri... [more]
RISB_ANOFW1.393e-3457.266,7-dimethyl-8-ribityllumazine synthase OS=Anoxyba... [more]
RISB_ACTP71.814e-3453.786,7-dimethyl-8-ribityllumazine synthase OS=Actinob... [more]
RISB_CLOB81.814e-3451.266,7-dimethyl-8-ribityllumazine synthase OS=Clostri... [more]
RISB_CLOP12.903e-3450.826,7-dimethyl-8-ribityllumazine synthase OS=Clostri... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP3YO01FM1 TF Citrus clementina cDNA clone KN0AAP3YO01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925770 ID=FC925770; Name=FC925770; organism=Citrus clementina; type=EST; length=586bp
CATTTATCGTCCTTACAAACGGAAGCTGTGAGGCATTTGACTGGATTCCT
TACAAAAAATGAGGGGCTTCGTTTTGCTGTGGTTGTTGCACGGTTTAATG
AGCTGGTGACAAAACTACTGTTAGAGGAGCTTTGGAGACTTTCAAGAAGT
ATTCAGTTAAGGAAGAAAACATTGATGTTGTGTGGGTTCCTGGTAGTTTT
GAAATTGGTGTTGTTGCACAACAGCTAGGGAAGTCTGGGAAGTATACTGC
AGTTTTATGTATTGGTGCCGTGGTAAGAGGTGATACTACTCACTATGATG
CTGTAGCTAATTCTGCTGCATCCGGAGTTCTTTCTGCTGGCATGAATTCA
GGTGTTCCATGCATATTTGGTGTCCTGACTTGCGATAACATGGACCAGGC
TTTGAATCGAGCTGGTGGTAAATCTGGGAATAAGGGTGCTGAGGCAGCTT
TGACTGCTATTGAAATGGCATCTTTATTTGAGCACCACCTGAAGTAGTGG
TTTCACCAAGAAAAGTTGGACAGAGTCCTTTTTCTGCTCATATTTTCCTT
TCGAGAAAGTGGCTTTTTGTTGTACTTTCATGAAAC
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