FC925775

Overview
NameFC925775
Unique NameFC925775
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length671
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC925775 vs. ExPASy Swiss-Prot
Match: PSMD1_DROME (26S proteasome non-ATPase regulatory subunit 1 OS=Drosophila melanogaster GN=Rpn2 PE=1 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 6.092e-32
Identity = 80/226 (35.40%), Postives = 125/226 (55.31%), Query Frame = 3
Query:   18 YQQAMGIAIECRRLDKLEEAITRIDNVHGTLSYCINVSHSFVNXXXXXXXXXXXXXXXXQKLPSPDYLSICQCLMFLDEPEGVVSILEKLLRSENKDDALLAFQIAFDLVENEHQAFLLNVRDHL----PVPKTQPLQTVQPGSNDPPSAQNDSSTAE-DVQMNEGTPASNV---NVQDEDPKEVIYAERLNKIKGILSGETSIQLTLQFLYSHNKSDLLILKTIK 671
            ++QA+GIA+E RR+D  ++AI + D+V G L+Y  NV+ S +                 + L  PDY+++CQCL+FL++P  V  +L+ L RS  + + L+A+QIAFDL E+  Q FL NV  HL    P+P   P      G+     A+++   ++ D  + E TPA +     +   +  E ++ + + K+  ILSGE SI L LQFL   N +DL +L+  K
Sbjct:  147 FRQALGIALETRRMDTFKDAIMKSDDVRGMLAYAYNVTMSLIQNRGFRNEVLRCLVSLYRDLGVPDYVNMCQCLIFLEDPFAVAEMLDNLTRSSVETNNLMAYQIAFDLYESATQEFLGNVLQHLKNTAPIPTALPSTFKPQGTTSEDGAKSEGDKSKSDEDITEETPADDKVERTIDSLNEVEKLHQKNIEKLISILSGEVSIDLQLQFLIRSNHADLQVLRGTK 372          
BLAST of FC925775 vs. ExPASy Swiss-Prot
Match: PSMD1_MOUSE (26S proteasome non-ATPase regulatory subunit 1 OS=Mus musculus GN=Psmd1 PE=1 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 1.270e-29
Identity = 83/221 (37.56%), Postives = 123/221 (55.66%), Query Frame = 3
Query:   18 YQQAMGIAIECRRLDKLEEAITRIDNVHGTLSYCINVSHSFVNXXXXXXXXXXXXXXXXQKLPSPDYLSICQCLMFLDEPEGVVSILEKLLRSENKDDALLAFQIAFDLVENEHQAFLLNVRDHLPVPKTQPLQTVQPGSNDP---PSAQNDSSTAEDVQMNEGTPASNVNVQDEDPKEVIYAERLNKIKGILSGETSIQLTLQFLYSHNKSDLLILKTIK 671
            Y+QA+GIA+E RRLD  E+ I   ++V G L+Y + +  S +                   L  PD++++CQCL+FLD+P+ V  ILEKL++   +D+ L+A+QI FDL E+  Q FL +V  +L    T P+ +V PGS +    P ++ DS   E  +      A        +PK+    + L  IK ILSGE +I+L LQFL  +N +DL+ILK  K
Sbjct:  147 YKQAIGIALETRRLDVFEKTILESNDVPGMLAYSLKLCMSLMQNKQFRNKVLRVLVKIYMNLEKPDFINVCQCLIFLDDPQAVSDILEKLVK---EDNLLMAYQICFDLYESASQQFLSSVIQNLRTVGT-PIASV-PGSTNTGTVPGSEKDSDPMETEEKTASAVAGKTPDASPEPKD----QTLKMIK-ILSGEMAIELHLQFLIRNNNTDLMILKNTK 357          
BLAST of FC925775 vs. ExPASy Swiss-Prot
Match: PSMD1_RAT (26S proteasome non-ATPase regulatory subunit 1 OS=Rattus norvegicus GN=Psmd1 PE=2 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 2.167e-29
Identity = 83/221 (37.56%), Postives = 123/221 (55.66%), Query Frame = 3
Query:   18 YQQAMGIAIECRRLDKLEEAITRIDNVHGTLSYCINVSHSFVNXXXXXXXXXXXXXXXXQKLPSPDYLSICQCLMFLDEPEGVVSILEKLLRSENKDDALLAFQIAFDLVENEHQAFLLNVRDHLPVPKTQPLQTVQPGSNDP---PSAQNDSSTAEDVQMNEGTPASNVNVQDEDPKEVIYAERLNKIKGILSGETSIQLTLQFLYSHNKSDLLILKTIK 671
            Y+QA+GIA+E RRLD  E+ I   ++V G L+Y + +  S +                   L  PD++++CQCL+FLD+ + V  ILEKL++   +D+ L+A+QI FDL E+  Q FL +V  +L    T P+ +V PGS +    P  + DS + E  +   G  A        +PK+    + L  IK ILSGE +I+L LQFL  +N +DL+ILK  K
Sbjct:  147 YKQAIGIALETRRLDVFEKTILESNDVPGMLAYSLKLCMSLMQNKQFRNKVLRVLVKIYMNLEKPDFINVCQCLIFLDDTQAVSDILEKLVK---EDNLLMAYQICFDLYESASQQFLSSVIQNLRTVGT-PIASV-PGSTNTGTVPGPEKDSDSMETEEKTAGAVAGKTPDASPEPKD----QTLKMIK-ILSGEMAIELHLQFLIRNNNTDLMILKNTK 357          
BLAST of FC925775 vs. ExPASy Swiss-Prot
Match: PSMD1_HUMAN (26S proteasome non-ATPase regulatory subunit 1 OS=Homo sapiens GN=PSMD1 PE=1 SV=2)

HSP 1 Score: 129.028 bits (323), Expect = 2.167e-29
Identity = 82/221 (37.10%), Postives = 123/221 (55.66%), Query Frame = 3
Query:   18 YQQAMGIAIECRRLDKLEEAITRIDNVHGTLSYCINVSHSFVNXXXXXXXXXXXXXXXXQKLPSPDYLSICQCLMFLDEPEGVVSILEKLLRSENKDDALLAFQIAFDLVENEHQAFLLNVRDHLPVPKTQPLQTVQPGSNDP---PSAQNDSSTAEDVQMNEGTPASNVNVQDEDPKEVIYAERLNKIKGILSGETSIQLTLQFLYSHNKSDLLILKTIK 671
            Y+QA+GIA+E RRLD  E+ I   ++V G L+Y + +  S +                   L  PD++++CQCL+FLD+P+ V  ILEKL++   +D+ L+A+QI FDL E+  Q FL +V  +L    T P+ +V PGS +    P ++ DS + E  +               +PK+    + L  IK ILSGE +I+L LQFL  +N +DL+ILK  K
Sbjct:  147 YKQAIGIALETRRLDVFEKTILESNDVPGMLAYSLKLCMSLMQNKQFRNKVLRVLVKIYMNLEKPDFINVCQCLIFLDDPQAVSDILEKLVK---EDNLLMAYQICFDLYESASQQFLSSVIQNLRTVGT-PIASV-PGSTNTGTVPGSEKDSDSMETEEKTSSAFVGKTPEASPEPKD----QTLKMIK-ILSGEMAIELHLQFLIRNNNTDLMILKNTK 357          
BLAST of FC925775 vs. ExPASy Swiss-Prot
Match: PSMD1_PONAB (26S proteasome non-ATPase regulatory subunit 1 OS=Pongo abelii GN=PSMD1 PE=2 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 2.830e-29
Identity = 82/221 (37.10%), Postives = 126/221 (57.01%), Query Frame = 3
Query:   18 YQQAMGIAIECRRLDKLEEAITRIDNVHGTLSYCINVSHSFVNXXXXXXXXXXXXXXXXQKLPSPDYLSICQCLMFLDEPEGVVSILEKLLRSENKDDALLAFQIAFDLVENEHQAFLLNVRDHLPVPKTQPLQTVQPGSNDPPSAQNDSSTAEDVQMNEGTPASNVNVQDE---DPKEVIYAERLNKIKGILSGETSIQLTLQFLYSHNKSDLLILKTIK 671
            Y+QA+GIA+E RRLD  E+ I   ++V G L+Y + +  S +                   L  PD++++CQCL+FLD+P+ V  ILEKL++   +D+ L+A+QI FDL E+  Q FL +V  +L    T P+ +V PGS +  +       ++ ++  E T ++ V    E   +PK+    + L  IK ILSGE +I+L LQFL  +N +DL+ILK  K
Sbjct:  147 YKQAIGIALETRRLDVFEKTILESNDVPGMLAYSLKLCMSLMQNKQFRNKVLRVLVKIYMNLEKPDFINVCQCLIFLDDPQAVSDILEKLVK---EDNLLMAYQICFDLYESASQQFLSSVIQNLRTVGT-PIASV-PGSTNTGTVPGSEKDSDSMETEEKTGSAFVGKTPEASPEPKD----QTLKMIK-ILSGEMAIELHLQFLIRNNNTDLMILKNTK 357          
BLAST of FC925775 vs. ExPASy Swiss-Prot
Match: PSMD1_CHICK (26S proteasome non-ATPase regulatory subunit 1 OS=Gallus gallus GN=PSMD1 PE=2 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 2.830e-29
Identity = 81/221 (36.65%), Postives = 125/221 (56.56%), Query Frame = 3
Query:   18 YQQAMGIAIECRRLDKLEEAITRIDNVHGTLSYCINVSHSFVNXXXXXXXXXXXXXXXXQKLPSPDYLSICQCLMFLDEPEGVVSILEKLLRSENKDDALLAFQIAFDLVENEHQAFLLNVRDHLPVPKTQPLQTVQPGSNDP---PSAQNDSSTAEDVQMNEGTPASNVNVQDEDPKEVIYAERLNKIKGILSGETSIQLTLQFLYSHNKSDLLILKTIK 671
            Y+QA+GIA+E RRLD  E+ I   ++V G L+Y + +  S +                   L  PD++++CQCL+FLD+P+ V  ILEKL++   +D+ L+A+QI FDL E+  Q FL +V  +L    T P+ +V PGS +    P ++ DS   E  +    T        + +PK     ++++K+  ILSGE +I+L LQFL  +N +DL+ILK  K
Sbjct:  147 YKQAIGIALETRRLDIFEKTILESNDVPGMLAYSLKLCMSLMQNKQFRNKVLRVLVKIYMNLEKPDFINVCQCLIFLDDPQAVSDILEKLVK---EDNLLMAYQICFDLYESASQQFLSSVIQNLRTVGT-PIASV-PGSTNTGTVPGSEKDSDAMEAEEKPGSTCVGKSAEINPEPK-----DQISKMIKILSGEMAIELHLQFLIRNNNTDLMILKNTK 357          
BLAST of FC925775 vs. ExPASy Swiss-Prot
Match: PSMD1_DICDI (26S proteasome non-ATPase regulatory subunit 1 OS=Dictyostelium discoideum GN=psmD1 PE=1 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 5.337e-28
Identity = 80/219 (36.53%), Postives = 120/219 (54.79%), Query Frame = 3
Query:   18 YQQAMGIAIECRRLDKLEEAITRIDNVHGTLSYCINVSHSFVNXXXXXXXXXXXXXXXXQKLPSPDYLSICQCLMFLDEPEGVVSILEKLLRSENKDDALLAFQIAFDLVENEHQAFLLNVRDHL-PVPKTQPLQTVQPGSNDPPSAQNDSSTAEDVQMNEGTPASNVNVQDEDPKEVIYAERLNKIKGILSGETSIQLTLQFLYSHNKSDLLILKTIK 671
            Y+QA+GIAIE RRLD +E+AI++  NV+  LSYC+++ +  VN                     PDYLS+ QCL+FLD    V +IL  L++ ++++  LLA+QI FDL +N  Q FLLNVR+ L PV K     T    ++D      DS        NE +  S+            + +RL ++  IL G+ SI + L+FLY +  +D+ IL+++K
Sbjct:  145 YKQALGIAIEARRLDIIEKAISQSGNVNSMLSYCLHICNVSVNNRHFRHSVLGILVNLHLAQEKPDYLSVVQCLIFLDNHIEVATILLSLIK-KDEESLLLAYQIGFDLFQNSTQQFLLNVRNRLPPVEKKSTTTTTTTPASDSMEIDIDSG-------NEKSGGSS-----------SFEQRLERLHSILIGDVSIGMNLEFLYRNCSTDMHILQSMK 344          
BLAST of FC925775 vs. ExPASy Swiss-Prot
Match: RPN2_SCHPO (26S proteasome regulatory subunit rpn2 OS=Schizosaccharomyces pombe GN=rpn2 PE=1 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 8.272e-13
Identity = 63/219 (28.77%), Postives = 98/219 (44.75%), Query Frame = 3
Query:   18 YQQAMGIAIECRRLDKLEEAITRIDNVHGTLSYCINVSHSFVNXXXXXXXXXXXXXXXXQKLPSPDYLSICQCLMFLDEPEGVVSILEKLLRSENKDDALL-AFQIAFDLVENEHQAFLLNVRDHLPVPKTQPLQTVQPGSNDPPSAQNDSSTAEDVQMNEGTPASNVNVQDEDPKEVIYAERLNKIKGILSGETSIQLTLQFLYSHNKSDLLILKTIK 671
            ++  +GIAIE  RLD +E  I   D       Y + ++ + V                      PDY S+ +C++ L++      +L K L S+N D +LL A+Q+AFDL ++  Q FL +V D LP P                     +++ ED         +N + + ED     Y  R      ILSGE +++   +FLY+HN +D+LIL   K
Sbjct:  155 WRHVLGIAIEAHRLDIIEY-ILNADKETDLKPYVLELAMTVVLDIEFRNRLLRLLLSSFLTETEPDYFSVGKCVVHLNDASVAAKLLMK-LSSQNDDKSLLTAYQLAFDLEDSAPQEFLNSVMDLLPSPSV-------------------ANSEED---------ANADSKKEDSSPCGYIIR------ILSGEQTVKYDREFLYAHNNTDMLILNRTK 337          
The following BLAST results are available for this feature:
BLAST of FC925775 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
PSMD1_DROME6.092e-3235.4026S proteasome non-ATPase regulatory subunit 1 OS=... [more]
PSMD1_MOUSE1.270e-2937.5626S proteasome non-ATPase regulatory subunit 1 OS=... [more]
PSMD1_RAT2.167e-2937.5626S proteasome non-ATPase regulatory subunit 1 OS=... [more]
PSMD1_HUMAN2.167e-2937.1026S proteasome non-ATPase regulatory subunit 1 OS=... [more]
PSMD1_PONAB2.830e-2937.1026S proteasome non-ATPase regulatory subunit 1 OS=... [more]
PSMD1_CHICK2.830e-2936.6526S proteasome non-ATPase regulatory subunit 1 OS=... [more]
PSMD1_DICDI5.337e-2836.5326S proteasome non-ATPase regulatory subunit 1 OS=... [more]
RPN2_SCHPO8.272e-1328.7726S proteasome regulatory subunit rpn2 OS=Schizosa... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAP11YK13FM1 TF Citrus clementina cDNA clone KN0AAP11YK13, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925775 ID=FC925775; Name=FC925775; organism=Citrus clementina; type=EST; length=671bp
GTATTACTGATGTTTAATACCAACAAGCAATGGGAATTGCGATTGAGTGC
CGAAGATTGGATAAACTTGAGGAAGCAATCACCAGGATCGACAATGTGCA
TGGCACTTTGTCATATTGTATTAACGTCTCTCATTCCTTTGTTAATCGTA
GAGAATACCGGCGTGAGGTGCTTCGTCTCCTCGTTAAAGTTTATCAAAAG
CTTCCTTCTCCAGATTATTTGAGCATTTGCCAGTGTCTCATGTTCTTGGA
TGAACCCGAAGGTGTTGTGAGCATACTAGAGAAGCTTCTCCGTTCTGAGA
ACAAAGATGATGCATTATTGGCATTTCAAATCGCCTTTGATCTTGTGGAG
AATGAGCACCAAGCTTTTCTCTTGAATGTGAGAGATCACCTTCCTGTTCC
TAAAACTCAACCTCTGCAGACAGTGCAACCAGGATCCAATGATCCACCGT
CTGCTCAAAATGATAGTTCTACAGCTGAGGATGTTCAAATGAACGAGGGA
ACTCCTGCTTCCAATGTAAATGTACAAGATGAAGATCCAAAGGAAGTAAT
ATATGCTGAGAGACTCAATAAAATCAAGGGAATTTTGTCTGGGGAGACAT
CAATACAACTAACTCTGCAATTCTTATACAGTCATAACAAGTCGGATCTT
TTGATTCTTAAAACTATAAAG
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