FC925775
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC925775 vs. ExPASy Swiss-Prot
Match: PSMD1_DROME (26S proteasome non-ATPase regulatory subunit 1 OS=Drosophila melanogaster GN=Rpn2 PE=1 SV=1) HSP 1 Score: 137.502 bits (345), Expect = 6.092e-32 Identity = 80/226 (35.40%), Postives = 125/226 (55.31%), Query Frame = 3 Query: 18 YQQAMGIAIECRRLDKLEEAITRIDNVHGTLSYCINVSHSFVNXXXXXXXXXXXXXXXXQKLPSPDYLSICQCLMFLDEPEGVVSILEKLLRSENKDDALLAFQIAFDLVENEHQAFLLNVRDHL----PVPKTQPLQTVQPGSNDPPSAQNDSSTAE-DVQMNEGTPASNV---NVQDEDPKEVIYAERLNKIKGILSGETSIQLTLQFLYSHNKSDLLILKTIK 671 ++QA+GIA+E RR+D ++AI + D+V G L+Y NV+ S + + L PDY+++CQCL+FL++P V +L+ L RS + + L+A+QIAFDL E+ Q FL NV HL P+P P G+ A+++ ++ D + E TPA + + + E ++ + + K+ ILSGE SI L LQFL N +DL +L+ K Sbjct: 147 FRQALGIALETRRMDTFKDAIMKSDDVRGMLAYAYNVTMSLIQNRGFRNEVLRCLVSLYRDLGVPDYVNMCQCLIFLEDPFAVAEMLDNLTRSSVETNNLMAYQIAFDLYESATQEFLGNVLQHLKNTAPIPTALPSTFKPQGTTSEDGAKSEGDKSKSDEDITEETPADDKVERTIDSLNEVEKLHQKNIEKLISILSGEVSIDLQLQFLIRSNHADLQVLRGTK 372
BLAST of FC925775 vs. ExPASy Swiss-Prot
Match: PSMD1_MOUSE (26S proteasome non-ATPase regulatory subunit 1 OS=Mus musculus GN=Psmd1 PE=1 SV=1) HSP 1 Score: 129.798 bits (325), Expect = 1.270e-29 Identity = 83/221 (37.56%), Postives = 123/221 (55.66%), Query Frame = 3 Query: 18 YQQAMGIAIECRRLDKLEEAITRIDNVHGTLSYCINVSHSFVNXXXXXXXXXXXXXXXXQKLPSPDYLSICQCLMFLDEPEGVVSILEKLLRSENKDDALLAFQIAFDLVENEHQAFLLNVRDHLPVPKTQPLQTVQPGSNDP---PSAQNDSSTAEDVQMNEGTPASNVNVQDEDPKEVIYAERLNKIKGILSGETSIQLTLQFLYSHNKSDLLILKTIK 671 Y+QA+GIA+E RRLD E+ I ++V G L+Y + + S + L PD++++CQCL+FLD+P+ V ILEKL++ +D+ L+A+QI FDL E+ Q FL +V +L T P+ +V PGS + P ++ DS E + A +PK+ + L IK ILSGE +I+L LQFL +N +DL+ILK K Sbjct: 147 YKQAIGIALETRRLDVFEKTILESNDVPGMLAYSLKLCMSLMQNKQFRNKVLRVLVKIYMNLEKPDFINVCQCLIFLDDPQAVSDILEKLVK---EDNLLMAYQICFDLYESASQQFLSSVIQNLRTVGT-PIASV-PGSTNTGTVPGSEKDSDPMETEEKTASAVAGKTPDASPEPKD----QTLKMIK-ILSGEMAIELHLQFLIRNNNTDLMILKNTK 357
BLAST of FC925775 vs. ExPASy Swiss-Prot
Match: PSMD1_RAT (26S proteasome non-ATPase regulatory subunit 1 OS=Rattus norvegicus GN=Psmd1 PE=2 SV=1) HSP 1 Score: 129.028 bits (323), Expect = 2.167e-29 Identity = 83/221 (37.56%), Postives = 123/221 (55.66%), Query Frame = 3 Query: 18 YQQAMGIAIECRRLDKLEEAITRIDNVHGTLSYCINVSHSFVNXXXXXXXXXXXXXXXXQKLPSPDYLSICQCLMFLDEPEGVVSILEKLLRSENKDDALLAFQIAFDLVENEHQAFLLNVRDHLPVPKTQPLQTVQPGSNDP---PSAQNDSSTAEDVQMNEGTPASNVNVQDEDPKEVIYAERLNKIKGILSGETSIQLTLQFLYSHNKSDLLILKTIK 671 Y+QA+GIA+E RRLD E+ I ++V G L+Y + + S + L PD++++CQCL+FLD+ + V ILEKL++ +D+ L+A+QI FDL E+ Q FL +V +L T P+ +V PGS + P + DS + E + G A +PK+ + L IK ILSGE +I+L LQFL +N +DL+ILK K Sbjct: 147 YKQAIGIALETRRLDVFEKTILESNDVPGMLAYSLKLCMSLMQNKQFRNKVLRVLVKIYMNLEKPDFINVCQCLIFLDDTQAVSDILEKLVK---EDNLLMAYQICFDLYESASQQFLSSVIQNLRTVGT-PIASV-PGSTNTGTVPGPEKDSDSMETEEKTAGAVAGKTPDASPEPKD----QTLKMIK-ILSGEMAIELHLQFLIRNNNTDLMILKNTK 357
BLAST of FC925775 vs. ExPASy Swiss-Prot
Match: PSMD1_HUMAN (26S proteasome non-ATPase regulatory subunit 1 OS=Homo sapiens GN=PSMD1 PE=1 SV=2) HSP 1 Score: 129.028 bits (323), Expect = 2.167e-29 Identity = 82/221 (37.10%), Postives = 123/221 (55.66%), Query Frame = 3 Query: 18 YQQAMGIAIECRRLDKLEEAITRIDNVHGTLSYCINVSHSFVNXXXXXXXXXXXXXXXXQKLPSPDYLSICQCLMFLDEPEGVVSILEKLLRSENKDDALLAFQIAFDLVENEHQAFLLNVRDHLPVPKTQPLQTVQPGSNDP---PSAQNDSSTAEDVQMNEGTPASNVNVQDEDPKEVIYAERLNKIKGILSGETSIQLTLQFLYSHNKSDLLILKTIK 671 Y+QA+GIA+E RRLD E+ I ++V G L+Y + + S + L PD++++CQCL+FLD+P+ V ILEKL++ +D+ L+A+QI FDL E+ Q FL +V +L T P+ +V PGS + P ++ DS + E + +PK+ + L IK ILSGE +I+L LQFL +N +DL+ILK K Sbjct: 147 YKQAIGIALETRRLDVFEKTILESNDVPGMLAYSLKLCMSLMQNKQFRNKVLRVLVKIYMNLEKPDFINVCQCLIFLDDPQAVSDILEKLVK---EDNLLMAYQICFDLYESASQQFLSSVIQNLRTVGT-PIASV-PGSTNTGTVPGSEKDSDSMETEEKTSSAFVGKTPEASPEPKD----QTLKMIK-ILSGEMAIELHLQFLIRNNNTDLMILKNTK 357
BLAST of FC925775 vs. ExPASy Swiss-Prot
Match: PSMD1_PONAB (26S proteasome non-ATPase regulatory subunit 1 OS=Pongo abelii GN=PSMD1 PE=2 SV=1) HSP 1 Score: 128.642 bits (322), Expect = 2.830e-29 Identity = 82/221 (37.10%), Postives = 126/221 (57.01%), Query Frame = 3 Query: 18 YQQAMGIAIECRRLDKLEEAITRIDNVHGTLSYCINVSHSFVNXXXXXXXXXXXXXXXXQKLPSPDYLSICQCLMFLDEPEGVVSILEKLLRSENKDDALLAFQIAFDLVENEHQAFLLNVRDHLPVPKTQPLQTVQPGSNDPPSAQNDSSTAEDVQMNEGTPASNVNVQDE---DPKEVIYAERLNKIKGILSGETSIQLTLQFLYSHNKSDLLILKTIK 671 Y+QA+GIA+E RRLD E+ I ++V G L+Y + + S + L PD++++CQCL+FLD+P+ V ILEKL++ +D+ L+A+QI FDL E+ Q FL +V +L T P+ +V PGS + + ++ ++ E T ++ V E +PK+ + L IK ILSGE +I+L LQFL +N +DL+ILK K Sbjct: 147 YKQAIGIALETRRLDVFEKTILESNDVPGMLAYSLKLCMSLMQNKQFRNKVLRVLVKIYMNLEKPDFINVCQCLIFLDDPQAVSDILEKLVK---EDNLLMAYQICFDLYESASQQFLSSVIQNLRTVGT-PIASV-PGSTNTGTVPGSEKDSDSMETEEKTGSAFVGKTPEASPEPKD----QTLKMIK-ILSGEMAIELHLQFLIRNNNTDLMILKNTK 357
BLAST of FC925775 vs. ExPASy Swiss-Prot
Match: PSMD1_CHICK (26S proteasome non-ATPase regulatory subunit 1 OS=Gallus gallus GN=PSMD1 PE=2 SV=1) HSP 1 Score: 128.642 bits (322), Expect = 2.830e-29 Identity = 81/221 (36.65%), Postives = 125/221 (56.56%), Query Frame = 3 Query: 18 YQQAMGIAIECRRLDKLEEAITRIDNVHGTLSYCINVSHSFVNXXXXXXXXXXXXXXXXQKLPSPDYLSICQCLMFLDEPEGVVSILEKLLRSENKDDALLAFQIAFDLVENEHQAFLLNVRDHLPVPKTQPLQTVQPGSNDP---PSAQNDSSTAEDVQMNEGTPASNVNVQDEDPKEVIYAERLNKIKGILSGETSIQLTLQFLYSHNKSDLLILKTIK 671 Y+QA+GIA+E RRLD E+ I ++V G L+Y + + S + L PD++++CQCL+FLD+P+ V ILEKL++ +D+ L+A+QI FDL E+ Q FL +V +L T P+ +V PGS + P ++ DS E + T + +PK ++++K+ ILSGE +I+L LQFL +N +DL+ILK K Sbjct: 147 YKQAIGIALETRRLDIFEKTILESNDVPGMLAYSLKLCMSLMQNKQFRNKVLRVLVKIYMNLEKPDFINVCQCLIFLDDPQAVSDILEKLVK---EDNLLMAYQICFDLYESASQQFLSSVIQNLRTVGT-PIASV-PGSTNTGTVPGSEKDSDAMEAEEKPGSTCVGKSAEINPEPK-----DQISKMIKILSGEMAIELHLQFLIRNNNTDLMILKNTK 357
BLAST of FC925775 vs. ExPASy Swiss-Prot
Match: PSMD1_DICDI (26S proteasome non-ATPase regulatory subunit 1 OS=Dictyostelium discoideum GN=psmD1 PE=1 SV=1) HSP 1 Score: 124.405 bits (311), Expect = 5.337e-28 Identity = 80/219 (36.53%), Postives = 120/219 (54.79%), Query Frame = 3 Query: 18 YQQAMGIAIECRRLDKLEEAITRIDNVHGTLSYCINVSHSFVNXXXXXXXXXXXXXXXXQKLPSPDYLSICQCLMFLDEPEGVVSILEKLLRSENKDDALLAFQIAFDLVENEHQAFLLNVRDHL-PVPKTQPLQTVQPGSNDPPSAQNDSSTAEDVQMNEGTPASNVNVQDEDPKEVIYAERLNKIKGILSGETSIQLTLQFLYSHNKSDLLILKTIK 671 Y+QA+GIAIE RRLD +E+AI++ NV+ LSYC+++ + VN PDYLS+ QCL+FLD V +IL L++ ++++ LLA+QI FDL +N Q FLLNVR+ L PV K T ++D DS NE + S+ + +RL ++ IL G+ SI + L+FLY + +D+ IL+++K Sbjct: 145 YKQALGIAIEARRLDIIEKAISQSGNVNSMLSYCLHICNVSVNNRHFRHSVLGILVNLHLAQEKPDYLSVVQCLIFLDNHIEVATILLSLIK-KDEESLLLAYQIGFDLFQNSTQQFLLNVRNRLPPVEKKSTTTTTTTPASDSMEIDIDSG-------NEKSGGSS-----------SFEQRLERLHSILIGDVSIGMNLEFLYRNCSTDMHILQSMK 344
BLAST of FC925775 vs. ExPASy Swiss-Prot
Match: RPN2_SCHPO (26S proteasome regulatory subunit rpn2 OS=Schizosaccharomyces pombe GN=rpn2 PE=1 SV=1) HSP 1 Score: 73.9442 bits (180), Expect = 8.272e-13 Identity = 63/219 (28.77%), Postives = 98/219 (44.75%), Query Frame = 3 Query: 18 YQQAMGIAIECRRLDKLEEAITRIDNVHGTLSYCINVSHSFVNXXXXXXXXXXXXXXXXQKLPSPDYLSICQCLMFLDEPEGVVSILEKLLRSENKDDALL-AFQIAFDLVENEHQAFLLNVRDHLPVPKTQPLQTVQPGSNDPPSAQNDSSTAEDVQMNEGTPASNVNVQDEDPKEVIYAERLNKIKGILSGETSIQLTLQFLYSHNKSDLLILKTIK 671 ++ +GIAIE RLD +E I D Y + ++ + V PDY S+ +C++ L++ +L K L S+N D +LL A+Q+AFDL ++ Q FL +V D LP P +++ ED +N + + ED Y R ILSGE +++ +FLY+HN +D+LIL K Sbjct: 155 WRHVLGIAIEAHRLDIIEY-ILNADKETDLKPYVLELAMTVVLDIEFRNRLLRLLLSSFLTETEPDYFSVGKCVVHLNDASVAAKLLMK-LSSQNDDKSLLTAYQLAFDLEDSAPQEFLNSVMDLLPSPSV-------------------ANSEED---------ANADSKKEDSSPCGYIIR------ILSGEQTVKYDREFLYAHNNTDMLILNRTK 337 The following BLAST results are available for this feature:
BLAST of FC925775 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 8
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >FC925775 ID=FC925775; Name=FC925775; organism=Citrus clementina; type=EST; length=671bpback to top |