FC925780

Overview
NameFC925780
Unique NameFC925780
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length588
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC925780 vs. ExPASy Swiss-Prot
Match: ADF1_PETHY (Actin-depolymerizing factor 1 OS=Petunia hybrida GN=ADF1 PE=2 SV=1)

HSP 1 Score: 234.958 bits (598), Expect = 2.185e-61
Identity = 112/129 (86.82%), Postives = 122/129 (94.57%), Query Frame = 1
Query:    1 HDDCLLKFLELKAKRTYRFIVFKIEEKQKQVIVEKLGEPTQTYEDFAASLPAEECRYAVYDYDFVTAENCQKSRIFFIAWSPDTARVRSKMIYASSKDRFKRELDGIQVELQATDPSEMGLDVFKDRAN 387
            HDDC L+FLELKAKRT+RFIV+KIEEKQKQV+VEK+GEPT++YEDFAASLP  ECRYAVYD+DFVTAENCQKSRIFFIAW PDTARVRSKMIYASSKDRFKRELDGIQVELQA DP+EMGLDV + RAN
Sbjct:   11 HDDCKLRFLELKAKRTHRFIVYKIEEKQKQVVVEKIGEPTESYEDFAASLPENECRYAVYDFDFVTAENCQKSRIFFIAWCPDTARVRSKMIYASSKDRFKRELDGIQVELQACDPTEMGLDVIQSRAN 139          
BLAST of FC925780 vs. ExPASy Swiss-Prot
Match: ADF2_PETHY (Actin-depolymerizing factor 2 OS=Petunia hybrida GN=ADF2 PE=2 SV=1)

HSP 1 Score: 234.187 bits (596), Expect = 3.727e-61
Identity = 112/132 (84.85%), Postives = 124/132 (93.94%), Query Frame = 1
Query:    1 HDDCLLKFLELKAKRTYRFIVFKIEEKQKQVIVEKLGEPTQTYEDFAASLPAEECRYAVYDYDFVTAENCQKSRIFFIAWSPDTARVRSKMIYASSKDRFKRELDGIQVELQATDPSEMGLDVFKDRAN*IK 396
            HDDC LKFLELKAKRTYRFI++KIEEKQK+V+VEKLGEPT++YEDF A LPA+ECRYAVYD+DF+T EN QKSRIFFIAWSPDTARVRSKMIYASSKDRFKRELDGIQVELQATDP+EMGLDVF+ RA  I+
Sbjct:   11 HDDCKLKFLELKAKRTYRFIIYKIEEKQKEVVVEKLGEPTESYEDFTAGLPADECRYAVYDFDFMTKENHQKSRIFFIAWSPDTARVRSKMIYASSKDRFKRELDGIQVELQATDPTEMGLDVFRSRAGGIE 142          
BLAST of FC925780 vs. ExPASy Swiss-Prot
Match: ADF4_ARATH (Actin-depolymerizing factor 4 OS=Arabidopsis thaliana GN=ADF4 PE=2 SV=2)

HSP 1 Score: 230.335 bits (586), Expect = 5.381e-60
Identity = 110/129 (85.27%), Postives = 120/129 (93.02%), Query Frame = 1
Query:    1 HDDCLLKFLELKAKRTYRFIVFKIEEKQKQVIVEKLGEPTQTYEDFAASLPAEECRYAVYDYDFVTAENCQKSRIFFIAWSPDTARVRSKMIYASSKDRFKRELDGIQVELQATDPSEMGLDVFKDRAN 387
            HDDC L+FLELKAKRT+RFIV+KIEEKQKQVIVEK+GEP  TYEDFAASLPA+ECRYA+YD+DFVTAENCQKS+IFFIAW PD A+VRSKMIYASSKDRFKRELDGIQVELQATDP+EM LDV K R N
Sbjct:   11 HDDCKLRFLELKAKRTHRFIVYKIEEKQKQVIVEKVGEPILTYEDFAASLPADECRYAIYDFDFVTAENCQKSKIFFIAWCPDVAKVRSKMIYASSKDRFKRELDGIQVELQATDPTEMDLDVLKSRVN 139          
BLAST of FC925780 vs. ExPASy Swiss-Prot
Match: ADF1_ARATH (Actin-depolymerizing factor 1 OS=Arabidopsis thaliana GN=ADF1 PE=1 SV=1)

HSP 1 Score: 230.335 bits (586), Expect = 5.381e-60
Identity = 108/129 (83.72%), Postives = 122/129 (94.57%), Query Frame = 1
Query:    1 HDDCLLKFLELKAKRTYRFIVFKIEEKQKQVIVEKLGEPTQTYEDFAASLPAEECRYAVYDYDFVTAENCQKSRIFFIAWSPDTARVRSKMIYASSKDRFKRELDGIQVELQATDPSEMGLDVFKDRAN 387
            HDDC L+FLELKAKRT+RFIV+KIEEKQKQV+VEK+G+P QTYE+FAA LPA+ECRYA+YD+DFVTAENCQKS+IFFIAW PD A+VRSKMIYASSKDRFKRELDGIQVELQATDP+EM LDVF+ RAN
Sbjct:   11 HDDCKLRFLELKAKRTHRFIVYKIEEKQKQVVVEKVGQPIQTYEEFAACLPADECRYAIYDFDFVTAENCQKSKIFFIAWCPDIAKVRSKMIYASSKDRFKRELDGIQVELQATDPTEMDLDVFRSRAN 139          
BLAST of FC925780 vs. ExPASy Swiss-Prot
Match: ADF2_ARATH (Actin-depolymerizing factor 2 OS=Arabidopsis thaliana GN=ADF2 PE=2 SV=1)

HSP 1 Score: 223.787 bits (569), Expect = 5.037e-58
Identity = 107/129 (82.95%), Postives = 120/129 (93.02%), Query Frame = 1
Query:    1 HDDCLLKFLELKAKRTYRFIVFKIEEKQKQVIVEKLGEPTQTYEDFAASLPAEECRYAVYDYDFVTAENCQKSRIFFIAWSPDTARVRSKMIYASSKDRFKRELDGIQVELQATDPSEMGLDVFKDRAN 387
            HDDC LKF+ELKAKRT+R IV+KIE+KQ  VIVEKLGEP Q+Y+DFAASLPA++CRY +YD+DFVTAENCQKS+IFFIAWSPDTA+VR KMIYASSKDRFKRELDGIQVELQATDP+EMGLDVFK R N
Sbjct:   11 HDDCKLKFMELKAKRTFRTIVYKIEDKQ--VIVEKLGEPEQSYDDFAASLPADDCRYCIYDFDFVTAENCQKSKIFFIAWSPDTAKVRDKMIYASSKDRFKRELDGIQVELQATDPTEMGLDVFKSRTN 137          
BLAST of FC925780 vs. ExPASy Swiss-Prot
Match: ADF7_ORYSJ (Actin-depolymerizing factor 7 OS=Oryza sativa subsp. japonica GN=ADF7 PE=3 SV=2)

HSP 1 Score: 223.016 bits (567), Expect = 8.591e-58
Identity = 104/128 (81.25%), Postives = 119/128 (92.97%), Query Frame = 1
Query:    4 DDCLLKFLELKAKRTYRFIVFKIEEKQKQVIVEKLGEPTQTYEDFAASLPAEECRYAVYDYDFVTAENCQKSRIFFIAWSPDTARVRSKMIYASSKDRFKRELDGIQVELQATDPSEMGLDVFKDRAN 387
            D+C LKFLELKAKRTYRFI++KI+EK+K V+VEK+GEP   Y+DFAASLPA ECRYA++DYDFVT ENCQKS+IFFIAWSPDT+RVRSKMIYASSKDRFKRELDGIQVELQATDP+E+GLDV + RAN
Sbjct:   12 DECKLKFLELKAKRTYRFIIYKIDEKKKMVVVEKVGEPVLNYDDFAASLPANECRYAIFDYDFVTEENCQKSKIFFIAWSPDTSRVRSKMIYASSKDRFKRELDGIQVELQATDPTEVGLDVIRGRAN 139          
BLAST of FC925780 vs. ExPASy Swiss-Prot
Match: ADF3_ARATH (Actin-depolymerizing factor 3 OS=Arabidopsis thaliana GN=ADF3 PE=1 SV=1)

HSP 1 Score: 220.32 bits (560), Expect = 5.569e-57
Identity = 104/129 (80.62%), Postives = 119/129 (92.25%), Query Frame = 1
Query:    1 HDDCLLKFLELKAKRTYRFIVFKIEEKQKQVIVEKLGEPTQTYEDFAASLPAEECRYAVYDYDFVTAENCQKSRIFFIAWSPDTARVRSKMIYASSKDRFKRELDGIQVELQATDPSEMGLDVFKDRAN 387
            HDDC LKF+ELK KRT+RFI++KIEE QKQVIVEK+GEP QT+ED AASLPA+ECRYA++D+DFV++E   +SRIFF+AWSPDTARVRSKMIYASSKDRFKRELDGIQVELQATDP+EM LDVFK RAN
Sbjct:   11 HDDCKLKFMELKTKRTHRFIIYKIEELQKQVIVEKIGEPGQTHEDLAASLPADECRYAIFDFDFVSSEGVPRSRIFFVAWSPDTARVRSKMIYASSKDRFKRELDGIQVELQATDPTEMDLDVFKSRAN 139          
BLAST of FC925780 vs. ExPASy Swiss-Prot
Match: ADF10_ARATH (Actin-depolymerizing factor 10 OS=Arabidopsis thaliana GN=ADF10 PE=2 SV=1)

HSP 1 Score: 217.238 bits (552), Expect = 4.714e-56
Identity = 101/128 (78.91%), Postives = 114/128 (89.06%), Query Frame = 1
Query:    4 DDCLLKFLELKAKRTYRFIVFKIEEKQKQVIVEKLGEPTQTYEDFAASLPAEECRYAVYDYDFVTAENCQKSRIFFIAWSPDTARVRSKMIYASSKDRFKRELDGIQVELQATDPSEMGLDVFKDRAN 387
            D+C LKFLELKAKR YRFIVFKI+EK +QV+++KLG P +TYEDF  S+P +ECRYAVYDYDF T ENCQKS+IFFIAWSPDT+RVRSKM+YASSKDRFKRELDGIQVELQATDPSEM LD+ K R N
Sbjct:   12 DECKLKFLELKAKRNYRFIVFKIDEKAQQVMIDKLGNPEETYEDFTRSIPEDECRYAVYDYDFTTPENCQKSKIFFIAWSPDTSRVRSKMLYASSKDRFKRELDGIQVELQATDPSEMSLDIIKGRVN 139          
BLAST of FC925780 vs. ExPASy Swiss-Prot
Match: ADF8_ARATH (Actin-depolymerizing factor 8 OS=Arabidopsis thaliana GN=ADF8 PE=2 SV=2)

HSP 1 Score: 212.231 bits (539), Expect = 1.516e-54
Identity = 97/129 (75.19%), Postives = 116/129 (89.92%), Query Frame = 1
Query:    1 HDDCLLKFLELKAKRTYRFIVFKIEEKQKQVIVEKLGEPTQTYEDFAASLPAEECRYAVYDYDFVTAENCQKSRIFFIAWSPDTARVRSKMIYASSKDRFKRELDGIQVELQATDPSEMGLDVFKDRAN 387
            +D+C +KFLELKAKRTYRFIVFKI+EK +QV +EKLG P +TY+DF +S+P +ECRYAVYD+DF T +NCQKS+IFFIAWSPDT+RVRSKM+YASSKDRFKRE++GIQVELQATDPSEM LD+ K R N
Sbjct:   11 NDECKIKFLELKAKRTYRFIVFKIDEKAQQVQIEKLGNPEETYDDFTSSIPDDECRYAVYDFDFTTEDNCQKSKIFFIAWSPDTSRVRSKMLYASSKDRFKREMEGIQVELQATDPSEMSLDIIKGRLN 139          
BLAST of FC925780 vs. ExPASy Swiss-Prot
Match: ADF1_ORYSJ (Actin-depolymerizing factor 1 OS=Oryza sativa subsp. japonica GN=ADF1 PE=2 SV=1)

HSP 1 Score: 209.534 bits (532), Expect = 9.830e-54
Identity = 96/127 (75.59%), Postives = 117/127 (92.13%), Query Frame = 1
Query:    4 DDCLLKFLELKAKRTYRFIVFKIEEKQKQVIVEKLGEPTQTYEDFAASLPAEECRYAVYDYDFVTAENCQKSRIFFIAWSPDTARVRSKMIYASSKDRFKRELDGIQVELQATDPSEMGLDVFKDRA 384
            D+C LKFLELKAKR++RFIVFKI EK +QV+V++LG+P ++Y+DF A LPA+ECRYAV+D+DFVT ENCQKS+IFFI+W+PDT+RVRSKM+YASSKDRFKRELDGIQVELQATDPSEM +D+ K RA
Sbjct:   12 DECKLKFLELKAKRSFRFIVFKINEKVQQVVVDRLGQPGESYDDFTACLPADECRYAVFDFDFVTDENCQKSKIFFISWAPDTSRVRSKMLYASSKDRFKRELDGIQVELQATDPSEMSMDIVKSRA 138          
The following BLAST results are available for this feature:
BLAST of FC925780 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 73
Match NameE-valueIdentityDescription
ADF1_PETHY2.185e-6186.82Actin-depolymerizing factor 1 OS=Petunia hybrida G... [more]
ADF2_PETHY3.727e-6184.85Actin-depolymerizing factor 2 OS=Petunia hybrida G... [more]
ADF4_ARATH5.381e-6085.27Actin-depolymerizing factor 4 OS=Arabidopsis thali... [more]
ADF1_ARATH5.381e-6083.72Actin-depolymerizing factor 1 OS=Arabidopsis thali... [more]
ADF2_ARATH5.037e-5882.95Actin-depolymerizing factor 2 OS=Arabidopsis thali... [more]
ADF7_ORYSJ8.591e-5881.25Actin-depolymerizing factor 7 OS=Oryza sativa subs... [more]
ADF3_ARATH5.569e-5780.62Actin-depolymerizing factor 3 OS=Arabidopsis thali... [more]
ADF10_ARATH4.714e-5678.91Actin-depolymerizing factor 10 OS=Arabidopsis thal... [more]
ADF8_ARATH1.516e-5475.19Actin-depolymerizing factor 8 OS=Arabidopsis thali... [more]
ADF1_ORYSJ9.830e-5475.59Actin-depolymerizing factor 1 OS=Oryza sativa subs... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP3YO06FM1 TF Citrus clementina cDNA clone KN0AAP3YO06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925780 ID=FC925780; Name=FC925780; organism=Citrus clementina; type=EST; length=588bp
CATGATGACTGCCTGCTAAAGTTCTTGGAGTTGAAAGCCAAGAGAACCTA
CCGCTTCATAGTATTTAAGATTGAGGAGAAGCAGAAGCAGGTCATTGTGG
AAAAACTTGGTGAGCCAACTCAAACCTATGAAGATTTTGCTGCCAGCCTT
CCTGCTGAGGAGTGCCGATATGCTGTGTATGATTATGATTTTGTTACCGC
AGAGAACTGCCAAAAAAGCAGGATTTTCTTCATTGCATGGTCTCCCGACA
CTGCAAGAGTAAGAAGCAAGATGATTTATGCAAGCTCCAAGGACAGGTTC
AAGAGAGAGCTAGATGGCATTCAAGTGGAGCTGCAGGCAACTGATCCATC
TGAGATGGGTCTTGACGTATTTAAAGACCGTGCCAACTAAATAAAGGCTC
CTGATCTCAGCAATTGAGATTGTTTTTATCTTTTGTGCTTTACCTAAAGG
TGAAATGTTAATAGTTTGTGGCGGCAGCTTGAATCTAACTGAATTATGAT
ATTGGTTTGTTGTTCAAGTTTCACCGATGCAGTATTCTCCTCTAGAACCA
TTTCAGTGGTCTTTATGATGTCTTTATTGATTTGTTGT
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