FC925781

Overview
NameFC925781
Unique NameFC925781
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length691
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC925781 vs. ExPASy Swiss-Prot
Match: YOOF_SCHPO (Uncharacterized hydroxylase C887.15c OS=Schizosaccharomyces pombe GN=SPBC887.15c PE=1 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 5.664e-36
Identity = 84/207 (40.58%), Postives = 116/207 (56.04%), Query Frame = 1
Query:  160 PILVYWLYSGL-----YVVLGSFDKLDNYRLHSRIDEDEKNLVSKGDVVKGVLLQQFFQAIVAILLFAVTGNGAGA-EANQ----------------QSSP---------IAIARQFVIAMLVMDTWQYFMHRYMHHNKFLYRHIHSLHHRLVVPYAFGALYNHPIEGLLNDTIGGALSFLVSGMSPRVSIFFFSFATIKTVDDHCG 687
            P+++YW+ S       Y+ L  F+K   YR+H   +   +N V +  VVK VL QQ  + +V I L    G      EA Q                Q +P         I  A Q+  A  ++D+WQYF HRY+H+NK LY  IH+ HHRL VPYA GALYNHP EGL+ DT G  +++L +G+SP+ ++ FF+ +T+KTVDDHCG
Sbjct:   21 PVIIYWVASAFFGFLHYIELPVFEK---YRIHPPEEIARRNRVPQMAVVKAVLFQQLCEVVVGIALAMFEGYPEPIDEAKQMLRYEAFFSKNLPALLQVAPFAPKLAYNFIVPAFQYFFAFFIIDSWQYFWHRYLHYNKKLYNMIHAHHHRLQVPYAMGALYNHPFEGLILDTFGAGVAYLAAGLSPQQAVIFFTLSTLKTVDDHCG 224          
BLAST of FC925781 vs. ExPASy Swiss-Prot
Match: SUR2_YEAST (Sphingolipid C4-hydroxylase SUR2 OS=Saccharomyces cerevisiae GN=SUR2 PE=1 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 2.379e-34
Identity = 76/206 (36.89%), Postives = 114/206 (55.34%), Query Frame = 1
Query:  130 ISDELLGTFVPILVYWLYSGLYVVLGSFDKLDNYRLHSRIDEDEKNLVSKGDVVKGVLLQQFFQAIVAILL-----FAVTGNGAGAEANQQSSPIAI---------------ARQFVIAMLVMDTWQYFMHRYMHHNKFLYRHIHSLHHRLVVPYAFGALYNHPIEGLLNDTIGGALSFLVSGMSPRVSIFFFSFATIKTVDDHCG 687
            +SD +L    P++ YW  SG++ V+ +F   + YR+H   +  ++N  S+  V   V+LQ   Q IV ++        +TG    A    ++    I               A +     L +DTWQYF+HR MH NK LY+  HS+HH L VPYA+GAL+N+P+EG L DT+G  ++  ++ ++ R  I  F+FAT+KTVDDHCG
Sbjct:   46 MSDGVLALVAPVVAYWALSGIFHVIDTFHLAEKYRIHPSEEVAKRNKASRMHVFLEVILQHIIQTIVGLIFMHFEPIYMTGFEENAMWKLRADLPRIIPDAAIYYGYMYGMSALKIFAGFLFVDTWQYFLHRLMHMNKTLYKWFHSVHHELYVPYAYGALFNNPVEGFLLDTLGTGIAMTLTHLTHREQIILFTFATMKTVDDHCG 251          
The following BLAST results are available for this feature:
BLAST of FC925781 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
YOOF_SCHPO5.664e-3640.58Uncharacterized hydroxylase C887.15c OS=Schizosacc... [more]
SUR2_YEAST2.379e-3436.89Sphingolipid C4-hydroxylase SUR2 OS=Saccharomyces ... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAP11YK16FM1 TF Citrus clementina cDNA clone KN0AAP11YK16, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925781 ID=FC925781; Name=FC925781; organism=Citrus clementina; type=EST; length=691bp
ACAAACACAGCTTTGGGTTTTGGTTGGTTTATCTTGTAAGAGCATTAATA
CTTTATATATTCGCAATAAAAGTTTAGGGCACTTTGAGCGAGTGTCCCGT
TGGCGATCGTCAACACGATGGCGTTTACGATTTCCGACGAATTGTTGGGC
ACTTTCGTCCCAATTTTAGTCTATTGGTTGTATTCAGGATTATACGTCGT
TCTTGGATCTTTTGATAAGCTTGATAATTATAGATTGCATTCGAGAATTG
ACGAGGACGAGAAAAATTTGGTCTCTAAGGGCGATGTCGTTAAAGGCGTT
CTCCTTCAGCAATTTTTTCAGGCTATTGTTGCAATTCTCTTGTTTGCGGT
GACAGGAAATGGTGCTGGGGCAGAAGCCAATCAACAGTCTTCTCCAATTG
CTATAGCTCGGCAGTTTGTTATAGCAATGTTGGTTATGGATACATGGCAG
TATTTTATGCACAGGTACATGCACCACAACAAGTTTTTGTATCGACACAT
CCATTCTCTACATCACCGCCTTGTTGTCCCCTATGCATTTGGAGCTTTGT
ATAATCACCCCATTGAGGGGCTTCTTAATGACACAATTGGCGGAGCCTTA
TCTTTTCTCGTTTCCGGTATGTCTCCCCGAGTCTCCATCTTCTTCTTTTC
CTTTGCCACCATCAAAACAGTGGATGACCACTGTGGATTAT
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