FC925782

Overview
NameFC925782
Unique NameFC925782
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length822
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC925782 vs. ExPASy Swiss-Prot
Match: AG_PETHY (Floral homeotic protein AGAMOUS OS=Petunia hybrida GN=AG1 PE=2 SV=1)

HSP 1 Score: 324.709 bits (831), Expect = 3.857e-88
Identity = 163/220 (74.09%), Postives = 194/220 (88.18%), Query Frame = 1
Query:  139 MAFPNELAAGREELSPKRKMGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEIALIVFSSRGRLYEYSNNSVKSTIDRYKKATADTSNTGSICESNAQFYQQEAAKLRIQISNMQNSNRNMLGESLSGLNFKELKNMETRLEKGISRIRSKKNELLFAEIEYMQKREVDLHNSNQLLRAKIAENERGQQNMNLMQGGSNYEII-QSQPFDS 795
            M F ++L     E+SP+RK+GRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAE+ALIVFSSRGRLYEY+NNSVK+TI+RYKKA +D+SNTGSI E+NAQ+YQQEA+KLR QI N+QN NRN LGESL+ LN ++L+N+E ++EKGIS+IR+KKNELLFAEIEYMQKRE+DLHN+NQ LRAKIAE ER QQ MNLM G S+Y+++   Q FD+
Sbjct:    1 MEFQSDLT---REISPQRKLGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNSVKATIERYKKACSDSSNTGSIAEANAQYYQQEASKLRAQIGNLQNQNRNFLGESLAALNLRDLRNLEQKIEKGISKIRAKKNELLFAEIEYMQKREIDLHNNNQYLRAKIAETERSQQ-MNLMPGSSSYDLVPPQQSFDA 216          
BLAST of FC925782 vs. ExPASy Swiss-Prot
Match: AG_TOBAC (Floral homeotic protein AGAMOUS OS=Nicotiana tabacum GN=AG1 PE=2 SV=1)

HSP 1 Score: 324.324 bits (830), Expect = 5.037e-88
Identity = 163/217 (75.12%), Postives = 191/217 (88.02%), Query Frame = 1
Query:  139 MAFPNELAAGREELSPKRKMGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEIALIVFSSRGRLYEYSNNSVKSTIDRYKKATADTSNTGSICESNAQFYQQEAAKLRIQISNMQNSNRNMLGESLSGLNFKELKNMETRLEKGISRIRSKKNELLFAEIEYMQKREVDLHNSNQLLRAKIAENERG-----QQNMNLMQGGSNYEII 774
            M F ++L     E+SP+RK+GRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAE+ALIVFSSRGRLYEY+NNSVK+TI+RYKKA +D+SNTGSI E+NAQ+YQQEA+KLR QI N+QN NRNMLGESL+ L+ ++LKN+E ++EKGIS+IRSKKNELLFAEIEYMQKRE+DLHN+NQ LRAKIAE ER      QQ MNLM G S+YE++
Sbjct:    1 MDFQSDLT---REISPQRKLGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNSVKATIERYKKACSDSSNTGSISEANAQYYQQEASKLRAQIGNLQNQNRNMLGESLAALSLRDLKNLEQKIEKGISKIRSKKNELLFAEIEYMQKREIDLHNNNQYLRAKIAETERAQQQQQQQQMNLMPGSSSYELV 214          
BLAST of FC925782 vs. ExPASy Swiss-Prot
Match: AG_PANGI (Floral homeotic protein AGAMOUS OS=Panax ginseng GN=AG2 PE=2 SV=1)

HSP 1 Score: 324.324 bits (830), Expect = 5.037e-88
Identity = 159/205 (77.56%), Postives = 184/205 (89.76%), Query Frame = 1
Query:  178 LSPKRKMGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEIALIVFSSRGRLYEYSNNSVKSTIDRYKKATADTSNTGSICESNAQFYQQEAAKLRIQISNMQNSNRNMLGESLSGLNFKELKNMETRLEKGISRIRSKKNELLFAEIEYMQKREVDLHNSNQLLRAKIAENERGQQNMNLMQGGSNYEIIQSQPFD 792
            LSP+RK+GRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAE+ALIVFS+RGRLYEY+NNSVK TI+RYKKA  D+ NT S+ E+NAQFYQQEA+KLR +IS++Q +NRNM+GESL  L  ++LK +ET+LEKGISRIRSKKNELLFAEIEYMQK+E+DLHN+NQ LRAKIAENER QQ+MNLM G S+YE+   Q FD
Sbjct:   11 LSPQRKLGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSTRGRLYEYANNSVKGTIERYKKACTDSPNTSSVSEANAQFYQQEASKLRQEISSIQKNNRNMMGESLGSLTVRDLKGLETKLEKGISRIRSKKNELLFAEIEYMQKKEIDLHNNNQYLRAKIAENERAQQHMNLMPGSSDYELAPPQSFD 215          
BLAST of FC925782 vs. ExPASy Swiss-Prot
Match: AG_BRANA (Floral homeotic protein AGAMOUS OS=Brassica napus GN=AG1 PE=2 SV=1)

HSP 1 Score: 323.168 bits (827), Expect = 1.122e-87
Identity = 167/234 (71.37%), Postives = 193/234 (82.48%), Query Frame = 1
Query:  139 MAFPNELAAGREELSPKRKMGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEIALIVFSSRGRLYEYSNNSVKSTIDRYKKATADTSNTGSICESNAQFYQQEAAKLRIQISNMQNSNRNMLGESLSGLNFKELKNMETRLEKGISRIRSKKNELLFAEIEYMQKREVDLHNSNQLLRAKIAENERGQQNMNLMQGGSNYEII------QSQPFDSPELFPVPCI 822
            MA+  EL     E SP+RK GRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAE+ALIVFSSRGRLYEYSNNSVK TI+RYKKA +D SNTGS+ E NAQ+YQQE+AKLR QI ++QNSNR ++GE++  ++ KEL+N+E RL++ ++RIRSKKNELLFAEI+YMQKREVDLHN NQLLRAKIAENER   +M+LM GGSNYE I      Q QPFDS   F V  +
Sbjct:    1 MAYQMELGG---ESSPQRKAGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYSNNSVKGTIERYKKAISDNSNTGSVAEINAQYYQQESAKLRQQIISIQNSNRQLMGETIGSMSPKELRNLEGRLDRSVNRIRSKKNELLFAEIDYMQKREVDLHNDNQLLRAKIAENERNNPSMSLMPGGSNYEQIMPPPQTQPQPFDSRNYFQVAAL 231          
BLAST of FC925782 vs. ExPASy Swiss-Prot
Match: AG_ARATH (Floral homeotic protein AGAMOUS OS=Arabidopsis thaliana GN=AG PE=1 SV=2)

HSP 1 Score: 321.242 bits (822), Expect = 4.264e-87
Identity = 165/234 (70.51%), Postives = 194/234 (82.91%), Query Frame = 1
Query:  139 MAFPNELAAGREELSPKRKMGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEIALIVFSSRGRLYEYSNNSVKSTIDRYKKATADTSNTGSICESNAQFYQQEAAKLRIQISNMQNSNRNMLGESLSGLNFKELKNMETRLEKGISRIRSKKNELLFAEIEYMQKREVDLHNSNQLLRAKIAENERGQQNMNLMQGGSNYEII------QSQPFDSPELFPVPCI 822
            MA+ +EL     + SP RK GRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAE+ALIVFSSRGRLYEYSNNSVK TI+RYKKA +D SNTGS+ E NAQ+YQQE+AKLR QI ++QNSNR ++GE++  ++ KEL+N+E RLE+ I+RIRSKKNELLF+EI+YMQKREVDLHN NQ+LRAKIAENER   +++LM GGSNYE +      QSQPFDS   F V  +
Sbjct:    1 MAYQSELGG---DSSPLRKSGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYSNNSVKGTIERYKKAISDNSNTGSVAEINAQYYQQESAKLRQQIISIQNSNRQLMGETIGSMSPKELRNLEGRLERSITRIRSKKNELLFSEIDYMQKREVDLHNDNQILRAKIAENERNNPSISLMPGGSNYEQLMPPPQTQSQPFDSRNYFQVAAL 231          
BLAST of FC925782 vs. ExPASy Swiss-Prot
Match: AG_SOLLC (Floral homeotic protein AGAMOUS OS=Solanum lycopersicum GN=AG1 PE=2 SV=1)

HSP 1 Score: 318.546 bits (815), Expect = 2.764e-86
Identity = 162/220 (73.64%), Postives = 189/220 (85.91%), Query Frame = 1
Query:  139 MAFPNELAAGREELSPKRKMGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEIALIVFSSRGRLYEYSNNSVKSTIDRYKKATADTSNTGSICESNAQFYQQEAAKLRIQISNMQNSNRNMLGESLSGLNFKELKNMETRLEKGISRIRSKKNELLFAEIEYMQKREVDLHNSNQLLRAKIAENERGQ---QNMNLMQG-GSNYEIIQSQP 786
            M F ++L     E+SP+RK+GRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAE+AL+VFS+RGRLYEY+NNSVK+TI+RYKKA +D+SNTGS+ E+NAQ+YQQEA+KLR QI N+ N NRNM+GE+L+G+  KELKN+E R+EKGIS+IRSKKNELLFAEIEYMQKREVDLHN+NQ LRAKIAE ER Q   Q MNLM G  SNY  +   P
Sbjct:    1 MDFQSDLT---REISPQRKLGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALVVFSNRGRLYEYANNSVKATIERYKKACSDSSNTGSVSEANAQYYQQEASKLRAQIGNLMNQNRNMMGEALAGMKLKELKNLEQRIEKGISKIRSKKNELLFAEIEYMQKREVDLHNNNQYLRAKIAETERAQHQHQQMNLMPGSSSNYHELVPPP 217          
BLAST of FC925782 vs. ExPASy Swiss-Prot
Match: MADS3_ORYSJ (MADS-box transcription factor 3 OS=Oryza sativa subsp. japonica GN=MADS3 PE=2 SV=1)

HSP 1 Score: 285.034 bits (728), Expect = 3.386e-76
Identity = 140/209 (66.99%), Postives = 178/209 (85.17%), Query Frame = 1
Query:  196 MGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEIALIVFSSRGRLYEYSNNSVKSTIDRYKKATADTSNTGSICESNAQFYQQEAAKLRIQISNMQNSN-RNMLGESLSGLNFKELKNMETRLEKGISRIRSKKNELLFAEIEYMQKREVDLHNSNQLLRAKIAENERGQQNMNLMQGG--SNYEIIQSQPFDSPELFPV 813
            MGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAE+ALIVFSSRGRLYEY+NNSVKST++RYKKA +DTSN+G++ E NAQ YQQE++KLR QIS++QN+N R ++G+S++ ++ ++LK +E RLEKGI++IR++KNELL+AE+EYMQKREV+L N N  LR+K+ ENERGQQ +N+M     S Y+ + + P+DS     V
Sbjct:    1 MGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNSVKSTVERYKKANSDTSNSGTVAEVNAQHYQQESSKLRQQISSLQNANSRTIVGDSINTMSLRDLKQVENRLEKGIAKIRARKNELLYAEVEYMQKREVELQNDNMYLRSKVVENERGQQPLNMMGAASTSEYDHMVNNPYDSRNFLQV 209          
BLAST of FC925782 vs. ExPASy Swiss-Prot
Match: AGL1_ARATH (Agamous-like MADS-box protein AGL1 OS=Arabidopsis thaliana GN=AGL1 PE=1 SV=1)

HSP 1 Score: 280.411 bits (716), Expect = 8.341e-75
Identity = 141/208 (67.79%), Postives = 171/208 (82.21%), Query Frame = 1
Query:  154 ELAAGREELSPKRKMGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEIALIVFSSRGRLYEYSNNSVKSTIDRYKKATADTSNTGSICESNAQFYQQEAAKLRIQISNMQNSNRNMLGESLSGLNFKELKNMETRLEKGISRIRSKKNELLFAEIEYMQKREVDLHNSNQLLRAKIAENER---GQQNMNLMQGGSNYE 768
            E      +    +K+GRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAE+AL++FS+RGRLYEY+NNSV+ TI+RYKKA +D  N  S+ E+N Q+YQQEA+KLR QI ++QNSNR+++GESL  LNFKELKN+E RLEKGISR+RSKKNELL AEIEYMQKRE++L ++N  LRAKIAE  R    QQ  +++QG + YE
Sbjct:    2 EEGGSSHDAESSKKLGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALVIFSTRGRLYEYANNSVRGTIERYKKACSDAVNPPSVTEANTQYYQQEASKLRRQIRDIQNSNRHIVGESLGSLNFKELKNLEGRLEKGISRVRSKKNELLVAEIEYMQKREMELQHNNMYLRAKIAEGARLNPDQQESSVIQGTTVYE 209          
BLAST of FC925782 vs. ExPASy Swiss-Prot
Match: MAD58_ORYSJ (MADS-box transcription factor 58 OS=Oryza sativa subsp. japonica GN=MADS58 PE=2 SV=1)

HSP 1 Score: 275.404 bits (703), Expect = 2.683e-73
Identity = 138/224 (61.61%), Postives = 175/224 (78.12%), Query Frame = 1
Query:  139 MAFPNELAAGREELSPKRKMG-RGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEIALIVFSSRGRLYEYSNNSVKSTIDRYKKATADTSNTGSICESNAQFYQQEAAKLRIQISNMQNSNRNMLGESLSGLNFKELKNMETRLEKGISRIRSKKNELLFAEIEYMQKREVDLHNSNQLLRAKIAENERGQQNMNLMQGGSNYEIIQSQPFDSPELF 807
            +A P    +G        K+G RGKIEIKRIENTTNRQVTFCKRR+GLLKKAYELSVLCDAE+AL+VFSSRGRLYEYSNNSVK TI+RYKKA +DTSN  ++ E NAQ YQQEAAKL+ QI+N+QNSNR ++G++++ +N +ELK +E RL+KG+ +IR++KNELL AEIEYMQ+RE +L N N  L++K+AE+ERG Q +N+M   S  E +Q+     P  F
Sbjct:   23 VASPGSGGSGGSGSVGAEKIGSRGKIEIKRIENTTNRQVTFCKRRSGLLKKAYELSVLCDAEVALVVFSSRGRLYEYSNNSVKETIERYKKANSDTSNASTVAEINAQHYQQEAAKLKQQITNLQNSNRTLVGDNITTMNHRELKQLEGRLDKGLGKIRARKNELLCAEIEYMQRRETELQNDNMYLKSKVAESERGLQTVNMMGSASTSEYVQNMIHYDPRNF 246          
BLAST of FC925782 vs. ExPASy Swiss-Prot
Match: AGL5_ARATH (Agamous-like MADS-box protein AGL5 OS=Arabidopsis thaliana GN=AGL5 PE=2 SV=1)

HSP 1 Score: 273.863 bits (699), Expect = 7.807e-73
Identity = 138/206 (66.99%), Postives = 168/206 (81.55%), Query Frame = 1
Query:  154 ELAAGREELSPKRKMGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEIALIVFSSRGRLYEYSNNSVKSTIDRYKKATADTSNTGSICESNAQFYQQEAAKLRIQISNMQNSNRNMLGESLSGLNFKELKNMETRLEKGISRIRSKKNELLFAEIEYMQKREVDLHNSNQLLRAKIAENE-RGQQNMNLMQGGSNYE 768
            E  A  E     +K+GRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAE+AL++FS+RGRLYEY+NNSV+ TI+RYKKA +D  N  +I E+N Q+YQQEA+KLR QI ++QN NR++LGESL  LNFKELKN+E+RLEKGISR+RSKK+E+L AEIEYMQKRE++L N N  LR+KI E     QQ  +++  G+ YE
Sbjct:    2 EGGASNEVAESSKKIGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALVIFSTRGRLYEYANNSVRGTIERYKKACSDAVNPPTITEANTQYYQQEASKLRRQIRDIQNLNRHILGESLGSLNFKELKNLESRLEKGISRVRSKKHEMLVAEIEYMQKREIELQNDNMYLRSKITERTGLQQQESSVIHQGTVYE 207          
The following BLAST results are available for this feature:
BLAST of FC925782 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 122
Match NameE-valueIdentityDescription
AG_PETHY3.857e-8874.09Floral homeotic protein AGAMOUS OS=Petunia hybrida... [more]
AG_TOBAC5.037e-8875.12Floral homeotic protein AGAMOUS OS=Nicotiana tabac... [more]
AG_PANGI5.037e-8877.56Floral homeotic protein AGAMOUS OS=Panax ginseng G... [more]
AG_BRANA1.122e-8771.37Floral homeotic protein AGAMOUS OS=Brassica napus ... [more]
AG_ARATH4.264e-8770.51Floral homeotic protein AGAMOUS OS=Arabidopsis tha... [more]
AG_SOLLC2.764e-8673.64Floral homeotic protein AGAMOUS OS=Solanum lycoper... [more]
MADS3_ORYSJ3.386e-7666.99MADS-box transcription factor 3 OS=Oryza sativa su... [more]
AGL1_ARATH8.341e-7567.79Agamous-like MADS-box protein AGL1 OS=Arabidopsis ... [more]
MAD58_ORYSJ2.683e-7361.61MADS-box transcription factor 58 OS=Oryza sativa s... [more]
AGL5_ARATH7.807e-7366.99Agamous-like MADS-box protein AGL5 OS=Arabidopsis ... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP3YO07FM1 TF Citrus clementina cDNA clone KN0AAP3YO07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925782 ID=FC925782; Name=FC925782; organism=Citrus clementina; type=EST; length=822bp
CCCTGCTCTGTTCTCATTTTTTGTAAAGTAAGAAAGAAGAGAGAAATCCC
AAATCCTGCTGAAACCTTTGTTTCTGCTGTCCTTTTGATAATCAAAACCA
TTCTACATTCCTTTGGTTAGACAGTGGTCAAGTAAAGAATGGCGTTTCCA
AATGAATTAGCAGCAGGAAGAGAGGAATTATCACCAAAGAGAAAAATGGG
GAGAGGAAAGATCGAGATCAAGCGGATCGAAAACACAACAAATCGCCAAG
TGACCTTCTGCAAGAGGCGCAATGGTTTGCTCAAGAAAGCTTACGAATTA
TCTGTTCTTTGTGATGCTGAGATTGCTCTTATCGTCTTCTCCAGCCGCGG
CCGCCTTTATGAGTATTCCAACAACAGTGTGAAATCAACAATTGACAGGT
ACAAGAAGGCCACTGCAGATACCTCAAATACTGGGTCTATCTGTGAATCA
AATGCTCAGTTCTACCAACAAGAAGCTGCCAAGCTGAGGATACAAATTAG
CAATATGCAAAATTCAAACAGAAACATGTTGGGTGAATCACTAAGTGGGT
TAAATTTCAAGGAACTCAAGAACATGGAGACTCGTTTAGAGAAAGGTATT
AGCAGAATCCGATCTAAAAAGAATGAGCTGCTGTTTGCAGAAATTGAGTA
CATGCAGAAGAGGGAAGTTGACTTGCACAACAGCAACCAGCTTCTCCGAG
CAAAGATAGCCGAGAATGAAAGAGGACAGCAGAACATGAATTTGATGCAA
GGAGGGAGTAACTACGAGATTATACAGTCTCAGCCATTTGATTCCCCGGA
GCTATTTCCAGTTCCATGCATT
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