FC925790

Overview
NameFC925790
Unique NameFC925790
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length360
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC925790 vs. ExPASy Swiss-Prot
Match: RL8_SOLLC (60S ribosomal protein L8 OS=Solanum lycopersicum GN=RPL8 PE=2 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 1.010e-31
Identity = 58/63 (92.06%), Postives = 62/63 (98.41%), Query Frame = 3
Query:    3 EKPLFRAGNAYHKFRVKRNCWPKVRGVALNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI 191
            EKP+ +AGNAYHK+RVKRNCWPKVRGVA+NPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI
Sbjct:  176 EKPMLKAGNAYHKYRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI 238          
BLAST of FC925790 vs. ExPASy Swiss-Prot
Match: RL83_ARATH (60S ribosomal protein L8-3 OS=Arabidopsis thaliana GN=RPL8C PE=2 SV=2)

HSP 1 Score: 133.65 bits (335), Expect = 2.937e-31
Identity = 57/63 (90.48%), Postives = 62/63 (98.41%), Query Frame = 3
Query:    3 EKPLFRAGNAYHKFRVKRNCWPKVRGVALNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI 191
            EKP+ +AGNAYHK+RVKRNCWPKVRGVA+NPVEHPHGGGNHQHIGHASTVRRDAPPG+KVGLI
Sbjct:  176 EKPMLKAGNAYHKYRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGKKVGLI 238          
BLAST of FC925790 vs. ExPASy Swiss-Prot
Match: RL8_TOBAC (60S ribosomal protein L8 OS=Nicotiana tabacum GN=RPL8 PE=2 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 5.010e-31
Identity = 57/63 (90.48%), Postives = 61/63 (96.83%), Query Frame = 3
Query:    3 EKPLFRAGNAYHKFRVKRNCWPKVRGVALNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI 191
            EKP+ +AGNAYHK+RVKRNCWPKVRGVA+NPVEHPHGGGNHQHIGHASTV RDAPPGQKVGLI
Sbjct:  176 EKPMLKAGNAYHKYRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVARDAPPGQKVGLI 238          
BLAST of FC925790 vs. ExPASy Swiss-Prot
Match: RL81_ARATH (60S ribosomal protein L8-1 OS=Arabidopsis thaliana GN=RPL8A PE=2 SV=2)

HSP 1 Score: 131.339 bits (329), Expect = 1.458e-30
Identity = 57/63 (90.48%), Postives = 61/63 (96.83%), Query Frame = 3
Query:    3 EKPLFRAGNAYHKFRVKRNCWPKVRGVALNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI 191
            EKP+ +AGNAYHK+RVKRN WPKVRGVA+NPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI
Sbjct:  176 EKPMLKAGNAYHKYRVKRNSWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI 238          
BLAST of FC925790 vs. ExPASy Swiss-Prot
Match: RL8_ANOGA (60S ribosomal protein L8 OS=Anopheles gambiae GN=RpL8 PE=2 SV=2)

HSP 1 Score: 120.168 bits (300), Expect = 3.361e-27
Identity = 50/63 (79.37%), Postives = 58/63 (92.06%), Query Frame = 3
Query:    3 EKPLFRAGNAYHKFRVKRNCWPKVRGVALNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI 191
            +KP+ +AG AYHK++VKRNCWPKVRGVA+NPVEHPHGGGNHQHIG ASTV+R  PPG+KVGLI
Sbjct:  176 DKPILKAGRAYHKYKVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGKASTVKRGTPPGRKVGLI 238          
BLAST of FC925790 vs. ExPASy Swiss-Prot
Match: RL8_AEDAL (60S ribosomal protein L8 OS=Aedes albopictus GN=RpL8 PE=3 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 2.845e-26
Identity = 49/63 (77.78%), Postives = 57/63 (90.48%), Query Frame = 3
Query:    3 EKPLFRAGNAYHKFRVKRNCWPKVRGVALNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI 191
            +KP+ +AG AY K++VKRNCWPKVRGVA+NPVEHPHGGGNHQHIG ASTV+R  PPG+KVGLI
Sbjct:  176 DKPILKAGRAYRKYKVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGKASTVKRGTPPGRKVGLI 238          
BLAST of FC925790 vs. ExPASy Swiss-Prot
Match: RL82_ARATH (60S ribosomal protein L8-2 OS=Arabidopsis thaliana GN=RPL8B PE=2 SV=2)

HSP 1 Score: 116.316 bits (290), Expect = 4.853e-26
Identity = 50/63 (79.37%), Postives = 54/63 (85.71%), Query Frame = 3
Query:    3 EKPLFRAGNAYHKFRVKRNCWPKVRGVALNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI 191
            EKP  +AGNAYHK++ KRNCWP VRGVA+NPVEHPHGGGNHQHIGHASTVRRD   G KVG I
Sbjct:  177 EKPFLKAGNAYHKYKAKRNCWPVVRGVAMNPVEHPHGGGNHQHIGHASTVRRDKSAGAKVGQI 239          
BLAST of FC925790 vs. ExPASy Swiss-Prot
Match: RL2_SCHPO (60S ribosomal protein L2 OS=Schizosaccharomyces pombe GN=rpl2a PE=2 SV=2)

HSP 1 Score: 115.161 bits (287), Expect = 1.081e-25
Identity = 46/63 (73.02%), Postives = 57/63 (90.48%), Query Frame = 3
Query:    3 EKPLFRAGNAYHKFRVKRNCWPKVRGVALNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI 191
            +KPL +AG A+HK+RVKRNCWP+ RGVA+NPV+HPHGGGNHQH+GH++TV R + PGQKVGLI
Sbjct:  175 DKPLLKAGRAFHKYRVKRNCWPRTRGVAMNPVDHPHGGGNHQHVGHSTTVPRQSAPGQKVGLI 237          
BLAST of FC925790 vs. ExPASy Swiss-Prot
Match: RL8_XENTR (60S ribosomal protein L8 OS=Xenopus tropicalis GN=rpl8 PE=2 SV=3)

HSP 1 Score: 114.005 bits (284), Expect = 2.409e-25
Identity = 47/63 (74.60%), Postives = 56/63 (88.89%), Query Frame = 3
Query:    3 EKPLFRAGNAYHKFRVKRNCWPKVRGVALNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI 191
            +KP+ +AG AYHK++ KRNCWP+VRGVA+NPVEHP GGGNHQHIG  ST+RRDAP G+KVGLI
Sbjct:  176 DKPILKAGRAYHKYKAKRNCWPRVRGVAMNPVEHPFGGGNHQHIGKPSTIRRDAPAGRKVGLI 238          
BLAST of FC925790 vs. ExPASy Swiss-Prot
Match: RL8_XENLA (60S ribosomal protein L8 OS=Xenopus laevis GN=rpl8 PE=2 SV=3)

HSP 1 Score: 114.005 bits (284), Expect = 2.409e-25
Identity = 47/63 (74.60%), Postives = 56/63 (88.89%), Query Frame = 3
Query:    3 EKPLFRAGNAYHKFRVKRNCWPKVRGVALNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI 191
            +KP+ +AG AYHK++ KRNCWP+VRGVA+NPVEHP GGGNHQHIG  ST+RRDAP G+KVGLI
Sbjct:  176 DKPILKAGRAYHKYKAKRNCWPRVRGVAMNPVEHPFGGGNHQHIGKPSTIRRDAPAGRKVGLI 238          
The following BLAST results are available for this feature:
BLAST of FC925790 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 89
Match NameE-valueIdentityDescription
RL8_SOLLC1.010e-3192.0660S ribosomal protein L8 OS=Solanum lycopersicum G... [more]
RL83_ARATH2.937e-3190.4860S ribosomal protein L8-3 OS=Arabidopsis thaliana... [more]
RL8_TOBAC5.010e-3190.4860S ribosomal protein L8 OS=Nicotiana tabacum GN=R... [more]
RL81_ARATH1.458e-3090.4860S ribosomal protein L8-1 OS=Arabidopsis thaliana... [more]
RL8_ANOGA3.361e-2779.3760S ribosomal protein L8 OS=Anopheles gambiae GN=R... [more]
RL8_AEDAL2.845e-2677.7860S ribosomal protein L8 OS=Aedes albopictus GN=Rp... [more]
RL82_ARATH4.853e-2679.3760S ribosomal protein L8-2 OS=Arabidopsis thaliana... [more]
RL2_SCHPO1.081e-2573.0260S ribosomal protein L2 OS=Schizosaccharomyces po... [more]
RL8_XENTR2.409e-2574.6060S ribosomal protein L8 OS=Xenopus tropicalis GN=... [more]
RL8_XENLA2.409e-2574.6060S ribosomal protein L8 OS=Xenopus laevis GN=rpl8... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP3YO10FM1 TF Citrus clementina cDNA clone KN0AAP3YO10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925790 ID=FC925790; Name=FC925790; organism=Citrus clementina; type=EST; length=360bp
CTGAGAAGCCCCTTTTCAGGGCTGGTAATGCATACCACAAATTCAGAGTG
AAGCGAAACTGCTGGCCTAAGGTGCGTGGTGTGGCCTTGAACCCAGTGGA
GCATCCTCATGGAGGAGGTAACCACCAGCACATTGGTCATGCTAGCACTG
TTAGGCGTGATGCTCCTCCTGGCCAGAAGGTTGGTCTTATTGCAGCCAGG
AGGACTGGTCGGCTCAGAGGACAAGCTGCTGCCACTGCAGCCAAGGCCGA
CAAGGCTTAAATCCTTTGTGTTACAACAAATCGTCTCTCTATCGCGATCT
GTCATTTTACTTTTCCTGCTGCATCATTACCTTAGAAAAATTTGTTCCCA
TTTGGATCTT
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