FC925791

Overview
NameFC925791
Unique NameFC925791
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length767
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of FC925791 vs. ExPASy Swiss-Prot
Match: Y1105_ARATH (Probable receptor-like protein kinase At1g11050 OS=Arabidopsis thaliana GN=At1g11050 PE=2 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 5.754e-35
Identity = 88/246 (35.77%), Postives = 136/246 (55.28%), Query Frame = 2 
Query:   17 CCQTLTSLVGIGLALYLRETSMFQLPNETASSSCLSDFQHNLAALSINPSLVAACFPDKYQFVTRPSSCAGIVTTKDWRKLVGPTSALDSDCKN-MTGFTQCSSCVEAGYKVNSQLVSIQQNSTK---CFYFAILYAAGILN--DPKDEATAACILGLPLXXXXXXXXXXNDRVIKXXXXXXXXXXXXXXXXXXXXMYRKWYKKRKRNALHEEFVRSFKDSVLPNSGAKWFRESELDPATGGFSQK 736
            CCQ+L +L+GI LA  L++TS F+LPN   S SCL++ Q  L++LS++ +L + CF D  QFV    +CAGI TT+DW   +GP++ALDS C + +T  T+C +CV AG++V  QL+++  NS+    C++F + YAAGI+N   P+ +   +C+  L L          +   +                     +Y ++ K  K   +  E   S +    PN+G+ WF+  EL+ AT  FSQK
Sbjct:   57 CCQSLLTLIGIPLAHRLKQTSNFRLPNLATSISCLNNLQTKLSSLSLSSNLTSLCF-DPNQFVINNETCAGIQTTQDWVSRLGPSTALDSACSSGLTDLTRCDACVAAGFRVQKQLITLDGNSSHGVYCYHFVVTYAAGIVNKKGPESDDALSCLFSLSLRSPLNSKKKRH--TVALALGITGAIFGALVIAGLICLYFRFGKAVKGGEVGWEDQGS-RPKWRPNTGSIWFKIEELEKATNNFSQK 298
The following BLAST results are available for this feature:
BLAST of FC925791 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
Y1105_ARATH5.754e-3535.77Probable receptor-like protein kinase At1g11050 OS... [more]
back to top
Properties
Property NameValue
Genbank descriptionKN0AAP11YK20FM1 TF Citrus clementina cDNA clone KN0AAP11YK20, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925791 ID=FC925791; Name=FC925791; organism=Citrus clementina; type=EST; length=767bp
TCCTGATGGAACCCTATGCTGCCAGACTCTCACTAGCCTTGTTGGCATCG
GACTTGCTCTATACCTTAGAGAGACCTCAATGTTTCAATTACCAAACGAA
ACTGCTTCCTCTTCTTGCTTATCTGATTTTCAACACAATCTTGCCGCCTT
GTCGATAAATCCATCTTTAGTCGCCGCTTGCTTTCCCGACAAATACCAAT
TTGTCACAAGACCTTCAAGTTGTGCTGGAATTGTAACAACTAAAGACTGG
AGAAAATTGGTTGGTCCGACAAGCGCGCTAGACTCCGATTGCAAGAACAT
GACTGGATTTACCCAGTGCAGTTCATGTGTTGAAGCTGGTTACAAAGTGA
ATTCTCAGCTGGTAAGCATACAACAAAATTCAACAAAATGCTTTTACTTT
GCTATATTATACGCTGCTGGTATCCTCAATGATCCTAAGGATGAAGCCAC
GGCTGCTTGCATACTAGGCTTGCCTCTTTCTACCTCAGGGTCGAAGAACT
CGTCCAGTAATGATAGAGTGATCAAAATAGTAGTCGCATTACTGGGTGCT
CTTTTGGGTGTTCTGCTTGCTGGTGGATTGATCATTATGTACAGAAAGTG
GTATAAGAAAAGGAAACGGAATGCTTTACACGAGGAATTTGTGAGAAGTT
TTAAGGACAGTGTGTTACCAAACTCGGGTGCTAAATGGTTTCGTGAATCT
GAGCTTGATCCAGCTACCGGTGGATTCTCTCAGAAAATCTCATAGGCCAA
GGCGCCTCGGGGATTGT
back to top