FC925792
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC925792 vs. ExPASy Swiss-Prot
Match: CNGC1_ARATH (Cyclic nucleotide-gated ion channel 1 OS=Arabidopsis thaliana GN=CNGC1 PE=1 SV=1) HSP 1 Score: 188.348 bits (477), Expect = 2.555e-47 Identity = 89/194 (45.88%), Postives = 131/194 (67.53%), Query Frame = 1 Query: 34 CD-DCIGDYKFLDGVCPTKIRNTSIHDFGIFQDALQSGIVEVTDFPQKFLHCFRWGLRNLSCIGQNLQTSSNSWENFFVILVTICGXXXXXXXXGNMQMYLESKALKSKEMSVRMQEINEWMPIEKLSQSVQQQLKIYQRYVWRKPNNIDVESTLSSLPKELIRNIKHELCLELLKSVEEFKKLNEAILDALCD 612 CD + G FL+ CP + NT++ DFGIF DALQSG+VE DFPQKF +CF WGL+NLS +GQNL+TS+ WE F + ++I G GNMQ YL+S + +EM V+ ++ +WM L ++++++++ Y++Y W++ +D E+ LS+LPK+L R+IK LCL LL V F+K++E +LDALCD Sbjct: 307 CDPETAGGNAFLNESCPIQTPNTTLFDFGIFLDALQSGVVESQDFPQKFFYCFWWGLQNLSSLGQNLKTSTYIWEICFAVFISIAGLVLFSFLIGNMQTYLQSTTTRLEEMRVKRRDAEQWMSHRLLPENLRKRIRRYEQYKWQETRGVDEENLLSNLPKDLRRDIKRHLCLALLMRVPMFEKMDEQLLDALCD 500
BLAST of FC925792 vs. ExPASy Swiss-Prot
Match: CNGC3_ARATH (Probable cyclic nucleotide-gated ion channel 3 OS=Arabidopsis thaliana GN=CNGC3 PE=2 SV=2) HSP 1 Score: 175.252 bits (443), Expect = 2.238e-43 Identity = 83/187 (44.39%), Postives = 127/187 (67.91%), Query Frame = 1 Query: 61 FLDGVCPT----KIRNTSIHDFGIFQDALQSGIVEVTDFPQKFLHCFRWGLRNLSCIGQNLQTSSNSWENFFVILVTICGXXXXXXXXGNMQMYLESKALKSKEMSVRMQEINEWMPIEKLSQSVQQQLKIYQRYVWRKPNNIDVESTLSSLPKELIRNIKHELCLELLKSVEEFKKLNEAILDALC 609 FL+G CP +I N+++ +FGIF DALQSG+VE DFP+KF +CF WGLRNLS +GQNL+TS+ E F I++ I G GNMQ YL+S ++ +EM V+ ++ +WM L ++++++ Y++Y W++ ++ E+ LSSLPK+L ++IK LCL+LLK V F+ +++ +LDALC Sbjct: 304 FLNGSCPLIDPEEITNSTVFNFGIFADALQSGVVESRDFPKKFFYCFWWGLRNLSALGQNLKTSAFEGEIIFAIVICISGLVLFALLIGNMQKYLQSTTVRVEEMRVKRRDAEQWMSHRMLPDDLRKRIRKYEQYKWQETKGVEEEALLSSLPKDLRKDIKRHLCLKLLKKVPWFQAMDDRLLDALC 490
BLAST of FC925792 vs. ExPASy Swiss-Prot
Match: CNG10_ARATH (Probable cyclic nucleotide-gated ion channel 10 OS=Arabidopsis thaliana GN=CNGC10 PE=2 SV=2) HSP 1 Score: 169.859 bits (429), Expect = 9.404e-42 Identity = 89/206 (43.20%), Postives = 128/206 (62.14%), Query Frame = 1 Query: 10 GCNRGSFDCD-DCIGDYKFLDGVCPT----KIRNTSIHDFGIFQDALQSGIVEVTDFPQKFLHCFRWGLRNLSCIGQNLQTSSNSWENFFVILVTICGXXXXXXXXGNMQMYLESKALKSKEMSVRMQEINEWMPIEKLSQSVQQQLKIYQRYVWRKPNNIDVESTLSSLPKELIRNIKHELCLELLKSVEEFKKLNEAILDALCD 612 GCN C+ D FL CP I N++I +FGIF DAL+SG+VE DF +KF +CF WGLRNLS +GQNLQTS E F I + I G GNMQ YLES ++ +EM VR ++ +WM L + ++++++ Y++Y W++ ++ E+ L +LPK+L R+IK LCL+LLK V F+ ++E +LDA+CD Sbjct: 282 GCNMKFLYCENDRNVSNNFLTTSCPFLDPGDITNSTIFNFGIFTDALKSGVVESHDFWKKFFYCFWWGLRNLSALGQNLQTSKFVGEIIFAISICISGLVLFALLIGNMQKYLESTTVREEEMRVRKRDAEQWMSHRMLPEDLRKRIRRYEQYRWQETRGVEEETLLRNLPKDLRRDIKRHLCLDLLKKVPLFEIMDEQLLDAVCD 487
BLAST of FC925792 vs. ExPASy Swiss-Prot
Match: CNG13_ARATH (Putative cyclic nucleotide-gated ion channel 13 OS=Arabidopsis thaliana GN=CNGC13 PE=2 SV=2) HSP 1 Score: 164.081 bits (414), Expect = 5.160e-40 Identity = 78/178 (43.82%), Postives = 116/178 (65.17%), Query Frame = 1 Query: 79 PTKIRNTSIHDFGIFQDALQSGIVEVTDFPQKFLHCFRWGLRNLSCIGQNLQTSSNSWENFFVILVTICGXXXXXXXXGNMQMYLESKALKSKEMSVRMQEINEWMPIEKLSQSVQQQLKIYQRYVWRKPNNIDVESTLSSLPKELIRNIKHELCLELLKSVEEFKKLNEAILDALCD 612 P I N+++ +FGIF DAL+SGIVE DF +KF +CF WGLRNLS +GQNL TS E F + + I G GNMQ YLES ++ +EM VR ++ +WM L ++++++ Y++Y W++ ++ E+ L +LPK+L R+IK CL+LLK V F+ ++E +LDA+CD Sbjct: 311 PDDITNSTVFNFGIFTDALKSGIVESDDFWKKFFYCFWWGLRNLSALGQNLNTSKFVGEIIFAVSICISGLVLFALLIGNMQKYLESTTVREEEMRVRKRDAEQWMSHRMLPDDLRKRIRRYEQYKWQETRGVEEENLLRNLPKDLRRDIKRHFCLDLLKKVPLFEIMDEQLLDAVCD 488
BLAST of FC925792 vs. ExPASy Swiss-Prot
Match: CNG11_ARATH (Cyclic nucleotide-gated ion channel 11 OS=Arabidopsis thaliana GN=CNGC11 PE=2 SV=2) HSP 1 Score: 150.214 bits (378), Expect = 7.711e-36 Identity = 76/208 (36.54%), Postives = 127/208 (61.06%), Query Frame = 1 Query: 4 DTGCNRGSFDCDDCIGDYKFLDGVCP----TKIRNTSIHDFGIFQDALQSGIVEVT--DFPQKFLHCFRWGLRNLSCIGQNLQTSSNSWENFFVILVTICGXXXXXXXXGNMQMYLESKALKSKEMSVRMQEINEWMPIEKLSQSVQQQLKIYQRYVWRKPNNIDVESTLSSLPKELIRNIKHELCLELLKSVEEFKKLNEAILDALC 609 D C R D + +FL+ CP +I N++ DFG++ DAL+SG++EV DFP+KF++CF WGLRN+S +GQNL+TS+++ E FF I++ + G GN+Q YL+S + EM + ++ +WM ++ + ++++++ ++ Y WR+ + E+ L SLPK+L K L L+LLK V + +++ +LDALC Sbjct: 247 DLLCKRAGSD------NIRFLNTSCPLIDPAQITNSTDFDFGMYIDALKSGVLEVKPKDFPRKFVYCFWWGLRNISALGQNLETSNSAGEIFFAIIICVSGLLLFAVLIGNVQKYLQSSTTRVDEMEEKKRDTEKWMSYREIPEYLKERIRRFEDYKWRRTKGTEEEALLRSLPKDLRLETKRYLFLKLLKKVPLLQAMDDQLLDALC 448
BLAST of FC925792 vs. ExPASy Swiss-Prot
Match: CNG12_ARATH (Probable cyclic nucleotide-gated ion channel 12 OS=Arabidopsis thaliana GN=CNGC12 PE=2 SV=2) HSP 1 Score: 142.124 bits (357), Expect = 2.100e-33 Identity = 74/210 (35.24%), Postives = 126/210 (60.00%), Query Frame = 1 Query: 4 DTGCNRGSFDCDDCIGDYKFLDGVCP----TKIRNTSIHDFGIFQDALQSGIVEVT--DFPQKFLHCFRWGLRNLSCIGQNLQTSSNSWENFFVILVTICGXXXXXXXXGNMQMYLESKALKSKEMSVRMQEINEWMPIEKLSQSVQQQLKIYQRYVWRKPNNIDVESTLSSLPKELIRNIKHELCLELLKSVEEFKKLNEA-ILDALCD 612 D C R D + +FL+ CP +I N++ DFG++ DAL+SG++EV DFP+KF++CF WGLRN+S +GQNL+TS+++ E FF I++ + G GN+Q YL+S + EM + ++ +WM + + ++++++ ++ Y WR+ + E+ L SLPK+L K L L++LK V +++ +L+A+CD Sbjct: 247 DLLCKRAGSD------NIRFLNTSCPLIDPAQITNSTDFDFGMYIDALKSGVLEVKPKDFPRKFVYCFWWGLRNISALGQNLETSNSAGEIFFAIIICVSGLLLFAVLIGNVQKYLQSSTTRVDEMEEKRRDTEKWMSYRVIPEYLKERIRRFEDYKWRETKGTEEEALLRSLPKDLRLETKRYLYLDMLKRVPWLNIMDDGWLLEAVCD 450
BLAST of FC925792 vs. ExPASy Swiss-Prot
Match: CNGC8_ARATH (Putative cyclic nucleotide-gated ion channel 8 OS=Arabidopsis thaliana GN=CNGC8 PE=2 SV=2) HSP 1 Score: 140.584 bits (353), Expect = 6.110e-33 Identity = 65/168 (38.69%), Postives = 105/168 (62.50%), Query Frame = 1 Query: 109 DFGIFQDALQSGIVEVTDFPQKFLHCFRWGLRNLSCIGQNLQTSSNSWENFFVILVTICGXXXXXXXXGNMQMYLESKALKSKEMSVRMQEINEWMPIEKLSQSVQQQLKIYQRYVWRKPNNIDVESTLSSLPKELIRNIKHELCLELLKSVEEFKKLNEAILDALCD 612 ++GI+ A+ SGIV T F KF +C WGL+NLS +GQ LQTS+ E F I + + G GNMQ YL+S ++ +EM ++ ++ +WM L Q+++++++ Y +Y W + +D E+ + SLPK+L R+IK LCL L++ V F ++E +LDA+C+ Sbjct: 355 NYGIYSQAVSSGIVSSTTFFSKFCYCLWWGLQNLSTLGQGLQTSTYPGEVLFSIAIAVAGLLLFALLIGNMQTYLQSLTVRLEEMRIKRRDSEQWMHHRSLPQNLRERVRRYDQYKWLETRGVDEENIVQSLPKDLRRDIKRHLCLNLVRRVPLFANMDERLLDAICE 522
BLAST of FC925792 vs. ExPASy Swiss-Prot
Match: CNGC7_ARATH (Putative cyclic nucleotide-gated ion channel 7 OS=Arabidopsis thaliana GN=CNGC7 PE=2 SV=1) HSP 1 Score: 140.584 bits (353), Expect = 6.110e-33 Identity = 69/185 (37.30%), Postives = 111/185 (60.00%), Query Frame = 1 Query: 58 KFLDGVCPTKIRNTSIHDFGIFQDALQSGIVEVTDFPQKFLHCFRWGLRNLSCIGQNLQTSSNSWENFFVILVTICGXXXXXXXXGNMQMYLESKALKSKEMSVRMQEINEWMPIEKLSQSVQQQLKIYQRYVWRKPNNIDVESTLSSLPKELIRNIKHELCLELLKSVEEFKKLNEAILDALCD 612 + L C K ++ + +GI+ A+ SGIV T F KF +C WGL+NLS +GQ LQTS+ E F I + I G GNMQ YL+S ++ +EM ++ ++ +WM L Q+++++++ Y +Y W + +D E+ + SLPK+L R+IK LCL L++ V F ++E +LDA+C+ Sbjct: 333 ELLKSNCSAKADDSKFN-YGIYGQAISSGIVSSTTFFSKFCYCLWWGLQNLSTLGQGLQTSTFPGEVLFSIAIAIAGLLLFALLIGNMQTYLQSLTVRLEEMRIKRRDSEQWMHHRSLPQNLRERVRRYDQYKWLETRGVDEENIVQSLPKDLRRDIKRHLCLNLVRRVPLFANMDERLLDAICE 516
BLAST of FC925792 vs. ExPASy Swiss-Prot
Match: CNGC9_ARATH (Putative cyclic nucleotide-gated ion channel 9 OS=Arabidopsis thaliana GN=CNGC9 PE=1 SV=1) HSP 1 Score: 139.428 bits (350), Expect = 1.361e-32 Identity = 67/179 (37.43%), Postives = 105/179 (58.66%), Query Frame = 1 Query: 76 CPTKIRNTSIHDFGIFQDALQSGIVEVTDFPQKFLHCFRWGLRNLSCIGQNLQTSSNSWENFFVILVTICGXXXXXXXXGNMQMYLESKALKSKEMSVRMQEINEWMPIEKLSQSVQQQLKIYQRYVWRKPNNIDVESTLSSLPKELIRNIKHELCLELLKSVEEFKKLNEAILDALCD 612 CP + DFGI+ AL SGIV F K+ C WGL+NLS +GQ L+TS+ E F I + I G GNMQ YL+S ++ +EM V+ ++ +WM L ++++++ Y +Y W + +D E+ + +LPK+L R+IK LCL L++ V F+ ++E +LDA+C+ Sbjct: 349 CPVNTTDNPPFDFGIYLRALSSGIVSSKSFVSKYFFCLWWGLQNLSTLGQGLETSTYPGEVIFSIALAIAGLLLFALLIGNMQTYLQSLTIRLEEMRVKRRDSEQWMHHRMLPPELRERVRRYDQYKWLETRGVDEENLVQNLPKDLRRDIKRHLCLALVRRVPLFENMDERLLDAICE 527
BLAST of FC925792 vs. ExPASy Swiss-Prot
Match: CNGC5_ARATH (Probable cyclic nucleotide-gated ion channel 5 OS=Arabidopsis thaliana GN=CNGC5 PE=2 SV=1) HSP 1 Score: 137.502 bits (345), Expect = 5.172e-32 Identity = 67/172 (38.95%), Postives = 104/172 (60.47%), Query Frame = 1 Query: 94 NTSIHDFGIFQDALQSGIVEVTDFPQKFLHCFRWGLRNLSCIGQNLQTSSNSWENFFVILVTICGXXXXXXXXGNMQMYLESKALKSKEMSVRMQEINEWMPIEKLSQSVQQQLKIYQRYVWRKPNNIDVESTLSSLPKELIRNIKHELCLELLKSVEEFKKLNEAILDALC 609 N DFGI+ AL SGIV +F K+ +C WGL+NLS +GQ L+TS+ E F I + I G GNMQ YL+S ++ +EM V+ ++ +WM L Q ++++++ Y +Y W + +D E + +LPK+L R+IK LCL L++ V FK +++ +LDA+C Sbjct: 340 NNPPFDFGIYTQALSSGIVSSQNFIVKYCYCLWWGLQNLSTLGQGLETSTYPMEIIFSISLAISGLILFALLIGNMQTYLQSLTIRLEEMRVKRRDSEQWMHHRMLPQDLRERVRRYDQYKWLETRGVDEEYLVQNLPKDLRRDIKRHLCLALVRRVPLFKSMDDKLLDAIC 511 The following BLAST results are available for this feature:
BLAST of FC925792 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 20
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Sequences
The
following sequences are available for this feature:
EST sequence >FC925792 ID=FC925792; Name=FC925792; organism=Citrus clementina; type=EST; length=615bpback to top |