FC925792

Overview
NameFC925792
Unique NameFC925792
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length615
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC925792 vs. ExPASy Swiss-Prot
Match: CNGC1_ARATH (Cyclic nucleotide-gated ion channel 1 OS=Arabidopsis thaliana GN=CNGC1 PE=1 SV=1)

HSP 1 Score: 188.348 bits (477), Expect = 2.555e-47
Identity = 89/194 (45.88%), Postives = 131/194 (67.53%), Query Frame = 1
Query:   34 CD-DCIGDYKFLDGVCPTKIRNTSIHDFGIFQDALQSGIVEVTDFPQKFLHCFRWGLRNLSCIGQNLQTSSNSWENFFVILVTICGXXXXXXXXGNMQMYLESKALKSKEMSVRMQEINEWMPIEKLSQSVQQQLKIYQRYVWRKPNNIDVESTLSSLPKELIRNIKHELCLELLKSVEEFKKLNEAILDALCD 612
            CD +  G   FL+  CP +  NT++ DFGIF DALQSG+VE  DFPQKF +CF WGL+NLS +GQNL+TS+  WE  F + ++I G        GNMQ YL+S   + +EM V+ ++  +WM    L ++++++++ Y++Y W++   +D E+ LS+LPK+L R+IK  LCL LL  V  F+K++E +LDALCD
Sbjct:  307 CDPETAGGNAFLNESCPIQTPNTTLFDFGIFLDALQSGVVESQDFPQKFFYCFWWGLQNLSSLGQNLKTSTYIWEICFAVFISIAGLVLFSFLIGNMQTYLQSTTTRLEEMRVKRRDAEQWMSHRLLPENLRKRIRRYEQYKWQETRGVDEENLLSNLPKDLRRDIKRHLCLALLMRVPMFEKMDEQLLDALCD 500          
BLAST of FC925792 vs. ExPASy Swiss-Prot
Match: CNGC3_ARATH (Probable cyclic nucleotide-gated ion channel 3 OS=Arabidopsis thaliana GN=CNGC3 PE=2 SV=2)

HSP 1 Score: 175.252 bits (443), Expect = 2.238e-43
Identity = 83/187 (44.39%), Postives = 127/187 (67.91%), Query Frame = 1
Query:   61 FLDGVCPT----KIRNTSIHDFGIFQDALQSGIVEVTDFPQKFLHCFRWGLRNLSCIGQNLQTSSNSWENFFVILVTICGXXXXXXXXGNMQMYLESKALKSKEMSVRMQEINEWMPIEKLSQSVQQQLKIYQRYVWRKPNNIDVESTLSSLPKELIRNIKHELCLELLKSVEEFKKLNEAILDALC 609
            FL+G CP     +I N+++ +FGIF DALQSG+VE  DFP+KF +CF WGLRNLS +GQNL+TS+   E  F I++ I G        GNMQ YL+S  ++ +EM V+ ++  +WM    L   ++++++ Y++Y W++   ++ E+ LSSLPK+L ++IK  LCL+LLK V  F+ +++ +LDALC
Sbjct:  304 FLNGSCPLIDPEEITNSTVFNFGIFADALQSGVVESRDFPKKFFYCFWWGLRNLSALGQNLKTSAFEGEIIFAIVICISGLVLFALLIGNMQKYLQSTTVRVEEMRVKRRDAEQWMSHRMLPDDLRKRIRKYEQYKWQETKGVEEEALLSSLPKDLRKDIKRHLCLKLLKKVPWFQAMDDRLLDALC 490          
BLAST of FC925792 vs. ExPASy Swiss-Prot
Match: CNG10_ARATH (Probable cyclic nucleotide-gated ion channel 10 OS=Arabidopsis thaliana GN=CNGC10 PE=2 SV=2)

HSP 1 Score: 169.859 bits (429), Expect = 9.404e-42
Identity = 89/206 (43.20%), Postives = 128/206 (62.14%), Query Frame = 1
Query:   10 GCNRGSFDCD-DCIGDYKFLDGVCPT----KIRNTSIHDFGIFQDALQSGIVEVTDFPQKFLHCFRWGLRNLSCIGQNLQTSSNSWENFFVILVTICGXXXXXXXXGNMQMYLESKALKSKEMSVRMQEINEWMPIEKLSQSVQQQLKIYQRYVWRKPNNIDVESTLSSLPKELIRNIKHELCLELLKSVEEFKKLNEAILDALCD 612
            GCN     C+ D      FL   CP      I N++I +FGIF DAL+SG+VE  DF +KF +CF WGLRNLS +GQNLQTS    E  F I + I G        GNMQ YLES  ++ +EM VR ++  +WM    L + ++++++ Y++Y W++   ++ E+ L +LPK+L R+IK  LCL+LLK V  F+ ++E +LDA+CD
Sbjct:  282 GCNMKFLYCENDRNVSNNFLTTSCPFLDPGDITNSTIFNFGIFTDALKSGVVESHDFWKKFFYCFWWGLRNLSALGQNLQTSKFVGEIIFAISICISGLVLFALLIGNMQKYLESTTVREEEMRVRKRDAEQWMSHRMLPEDLRKRIRRYEQYRWQETRGVEEETLLRNLPKDLRRDIKRHLCLDLLKKVPLFEIMDEQLLDAVCD 487          
BLAST of FC925792 vs. ExPASy Swiss-Prot
Match: CNG13_ARATH (Putative cyclic nucleotide-gated ion channel 13 OS=Arabidopsis thaliana GN=CNGC13 PE=2 SV=2)

HSP 1 Score: 164.081 bits (414), Expect = 5.160e-40
Identity = 78/178 (43.82%), Postives = 116/178 (65.17%), Query Frame = 1
Query:   79 PTKIRNTSIHDFGIFQDALQSGIVEVTDFPQKFLHCFRWGLRNLSCIGQNLQTSSNSWENFFVILVTICGXXXXXXXXGNMQMYLESKALKSKEMSVRMQEINEWMPIEKLSQSVQQQLKIYQRYVWRKPNNIDVESTLSSLPKELIRNIKHELCLELLKSVEEFKKLNEAILDALCD 612
            P  I N+++ +FGIF DAL+SGIVE  DF +KF +CF WGLRNLS +GQNL TS    E  F + + I G        GNMQ YLES  ++ +EM VR ++  +WM    L   ++++++ Y++Y W++   ++ E+ L +LPK+L R+IK   CL+LLK V  F+ ++E +LDA+CD
Sbjct:  311 PDDITNSTVFNFGIFTDALKSGIVESDDFWKKFFYCFWWGLRNLSALGQNLNTSKFVGEIIFAVSICISGLVLFALLIGNMQKYLESTTVREEEMRVRKRDAEQWMSHRMLPDDLRKRIRRYEQYKWQETRGVEEENLLRNLPKDLRRDIKRHFCLDLLKKVPLFEIMDEQLLDAVCD 488          
BLAST of FC925792 vs. ExPASy Swiss-Prot
Match: CNG11_ARATH (Cyclic nucleotide-gated ion channel 11 OS=Arabidopsis thaliana GN=CNGC11 PE=2 SV=2)

HSP 1 Score: 150.214 bits (378), Expect = 7.711e-36
Identity = 76/208 (36.54%), Postives = 127/208 (61.06%), Query Frame = 1
Query:    4 DTGCNRGSFDCDDCIGDYKFLDGVCP----TKIRNTSIHDFGIFQDALQSGIVEVT--DFPQKFLHCFRWGLRNLSCIGQNLQTSSNSWENFFVILVTICGXXXXXXXXGNMQMYLESKALKSKEMSVRMQEINEWMPIEKLSQSVQQQLKIYQRYVWRKPNNIDVESTLSSLPKELIRNIKHELCLELLKSVEEFKKLNEAILDALC 609
            D  C R   D      + +FL+  CP     +I N++  DFG++ DAL+SG++EV   DFP+KF++CF WGLRN+S +GQNL+TS+++ E FF I++ + G        GN+Q YL+S   +  EM  + ++  +WM   ++ + ++++++ ++ Y WR+    + E+ L SLPK+L    K  L L+LLK V   + +++ +LDALC
Sbjct:  247 DLLCKRAGSD------NIRFLNTSCPLIDPAQITNSTDFDFGMYIDALKSGVLEVKPKDFPRKFVYCFWWGLRNISALGQNLETSNSAGEIFFAIIICVSGLLLFAVLIGNVQKYLQSSTTRVDEMEEKKRDTEKWMSYREIPEYLKERIRRFEDYKWRRTKGTEEEALLRSLPKDLRLETKRYLFLKLLKKVPLLQAMDDQLLDALC 448          
BLAST of FC925792 vs. ExPASy Swiss-Prot
Match: CNG12_ARATH (Probable cyclic nucleotide-gated ion channel 12 OS=Arabidopsis thaliana GN=CNGC12 PE=2 SV=2)

HSP 1 Score: 142.124 bits (357), Expect = 2.100e-33
Identity = 74/210 (35.24%), Postives = 126/210 (60.00%), Query Frame = 1
Query:    4 DTGCNRGSFDCDDCIGDYKFLDGVCP----TKIRNTSIHDFGIFQDALQSGIVEVT--DFPQKFLHCFRWGLRNLSCIGQNLQTSSNSWENFFVILVTICGXXXXXXXXGNMQMYLESKALKSKEMSVRMQEINEWMPIEKLSQSVQQQLKIYQRYVWRKPNNIDVESTLSSLPKELIRNIKHELCLELLKSVEEFKKLNEA-ILDALCD 612
            D  C R   D      + +FL+  CP     +I N++  DFG++ DAL+SG++EV   DFP+KF++CF WGLRN+S +GQNL+TS+++ E FF I++ + G        GN+Q YL+S   +  EM  + ++  +WM    + + ++++++ ++ Y WR+    + E+ L SLPK+L    K  L L++LK V     +++  +L+A+CD
Sbjct:  247 DLLCKRAGSD------NIRFLNTSCPLIDPAQITNSTDFDFGMYIDALKSGVLEVKPKDFPRKFVYCFWWGLRNISALGQNLETSNSAGEIFFAIIICVSGLLLFAVLIGNVQKYLQSSTTRVDEMEEKRRDTEKWMSYRVIPEYLKERIRRFEDYKWRETKGTEEEALLRSLPKDLRLETKRYLYLDMLKRVPWLNIMDDGWLLEAVCD 450          
BLAST of FC925792 vs. ExPASy Swiss-Prot
Match: CNGC8_ARATH (Putative cyclic nucleotide-gated ion channel 8 OS=Arabidopsis thaliana GN=CNGC8 PE=2 SV=2)

HSP 1 Score: 140.584 bits (353), Expect = 6.110e-33
Identity = 65/168 (38.69%), Postives = 105/168 (62.50%), Query Frame = 1
Query:  109 DFGIFQDALQSGIVEVTDFPQKFLHCFRWGLRNLSCIGQNLQTSSNSWENFFVILVTICGXXXXXXXXGNMQMYLESKALKSKEMSVRMQEINEWMPIEKLSQSVQQQLKIYQRYVWRKPNNIDVESTLSSLPKELIRNIKHELCLELLKSVEEFKKLNEAILDALCD 612
            ++GI+  A+ SGIV  T F  KF +C  WGL+NLS +GQ LQTS+   E  F I + + G        GNMQ YL+S  ++ +EM ++ ++  +WM    L Q+++++++ Y +Y W +   +D E+ + SLPK+L R+IK  LCL L++ V  F  ++E +LDA+C+
Sbjct:  355 NYGIYSQAVSSGIVSSTTFFSKFCYCLWWGLQNLSTLGQGLQTSTYPGEVLFSIAIAVAGLLLFALLIGNMQTYLQSLTVRLEEMRIKRRDSEQWMHHRSLPQNLRERVRRYDQYKWLETRGVDEENIVQSLPKDLRRDIKRHLCLNLVRRVPLFANMDERLLDAICE 522          
BLAST of FC925792 vs. ExPASy Swiss-Prot
Match: CNGC7_ARATH (Putative cyclic nucleotide-gated ion channel 7 OS=Arabidopsis thaliana GN=CNGC7 PE=2 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 6.110e-33
Identity = 69/185 (37.30%), Postives = 111/185 (60.00%), Query Frame = 1
Query:   58 KFLDGVCPTKIRNTSIHDFGIFQDALQSGIVEVTDFPQKFLHCFRWGLRNLSCIGQNLQTSSNSWENFFVILVTICGXXXXXXXXGNMQMYLESKALKSKEMSVRMQEINEWMPIEKLSQSVQQQLKIYQRYVWRKPNNIDVESTLSSLPKELIRNIKHELCLELLKSVEEFKKLNEAILDALCD 612
            + L   C  K  ++  + +GI+  A+ SGIV  T F  KF +C  WGL+NLS +GQ LQTS+   E  F I + I G        GNMQ YL+S  ++ +EM ++ ++  +WM    L Q+++++++ Y +Y W +   +D E+ + SLPK+L R+IK  LCL L++ V  F  ++E +LDA+C+
Sbjct:  333 ELLKSNCSAKADDSKFN-YGIYGQAISSGIVSSTTFFSKFCYCLWWGLQNLSTLGQGLQTSTFPGEVLFSIAIAIAGLLLFALLIGNMQTYLQSLTVRLEEMRIKRRDSEQWMHHRSLPQNLRERVRRYDQYKWLETRGVDEENIVQSLPKDLRRDIKRHLCLNLVRRVPLFANMDERLLDAICE 516          
BLAST of FC925792 vs. ExPASy Swiss-Prot
Match: CNGC9_ARATH (Putative cyclic nucleotide-gated ion channel 9 OS=Arabidopsis thaliana GN=CNGC9 PE=1 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 1.361e-32
Identity = 67/179 (37.43%), Postives = 105/179 (58.66%), Query Frame = 1
Query:   76 CPTKIRNTSIHDFGIFQDALQSGIVEVTDFPQKFLHCFRWGLRNLSCIGQNLQTSSNSWENFFVILVTICGXXXXXXXXGNMQMYLESKALKSKEMSVRMQEINEWMPIEKLSQSVQQQLKIYQRYVWRKPNNIDVESTLSSLPKELIRNIKHELCLELLKSVEEFKKLNEAILDALCD 612
            CP    +    DFGI+  AL SGIV    F  K+  C  WGL+NLS +GQ L+TS+   E  F I + I G        GNMQ YL+S  ++ +EM V+ ++  +WM    L   ++++++ Y +Y W +   +D E+ + +LPK+L R+IK  LCL L++ V  F+ ++E +LDA+C+
Sbjct:  349 CPVNTTDNPPFDFGIYLRALSSGIVSSKSFVSKYFFCLWWGLQNLSTLGQGLETSTYPGEVIFSIALAIAGLLLFALLIGNMQTYLQSLTIRLEEMRVKRRDSEQWMHHRMLPPELRERVRRYDQYKWLETRGVDEENLVQNLPKDLRRDIKRHLCLALVRRVPLFENMDERLLDAICE 527          
BLAST of FC925792 vs. ExPASy Swiss-Prot
Match: CNGC5_ARATH (Probable cyclic nucleotide-gated ion channel 5 OS=Arabidopsis thaliana GN=CNGC5 PE=2 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 5.172e-32
Identity = 67/172 (38.95%), Postives = 104/172 (60.47%), Query Frame = 1
Query:   94 NTSIHDFGIFQDALQSGIVEVTDFPQKFLHCFRWGLRNLSCIGQNLQTSSNSWENFFVILVTICGXXXXXXXXGNMQMYLESKALKSKEMSVRMQEINEWMPIEKLSQSVQQQLKIYQRYVWRKPNNIDVESTLSSLPKELIRNIKHELCLELLKSVEEFKKLNEAILDALC 609
            N    DFGI+  AL SGIV   +F  K+ +C  WGL+NLS +GQ L+TS+   E  F I + I G        GNMQ YL+S  ++ +EM V+ ++  +WM    L Q ++++++ Y +Y W +   +D E  + +LPK+L R+IK  LCL L++ V  FK +++ +LDA+C
Sbjct:  340 NNPPFDFGIYTQALSSGIVSSQNFIVKYCYCLWWGLQNLSTLGQGLETSTYPMEIIFSISLAISGLILFALLIGNMQTYLQSLTIRLEEMRVKRRDSEQWMHHRMLPQDLRERVRRYDQYKWLETRGVDEEYLVQNLPKDLRRDIKRHLCLALVRRVPLFKSMDDKLLDAIC 511          
The following BLAST results are available for this feature:
BLAST of FC925792 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 20
Match NameE-valueIdentityDescription
CNGC1_ARATH2.555e-4745.88Cyclic nucleotide-gated ion channel 1 OS=Arabidops... [more]
CNGC3_ARATH2.238e-4344.39Probable cyclic nucleotide-gated ion channel 3 OS=... [more]
CNG10_ARATH9.404e-4243.20Probable cyclic nucleotide-gated ion channel 10 OS... [more]
CNG13_ARATH5.160e-4043.82Putative cyclic nucleotide-gated ion channel 13 OS... [more]
CNG11_ARATH7.711e-3636.54Cyclic nucleotide-gated ion channel 11 OS=Arabidop... [more]
CNG12_ARATH2.100e-3335.24Probable cyclic nucleotide-gated ion channel 12 OS... [more]
CNGC8_ARATH6.110e-3338.69Putative cyclic nucleotide-gated ion channel 8 OS=... [more]
CNGC7_ARATH6.110e-3337.30Putative cyclic nucleotide-gated ion channel 7 OS=... [more]
CNGC9_ARATH1.361e-3237.43Putative cyclic nucleotide-gated ion channel 9 OS=... [more]
CNGC5_ARATH5.172e-3238.95Probable cyclic nucleotide-gated ion channel 5 OS=... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP3YO11FM1 TF Citrus clementina cDNA clone KN0AAP3YO11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925792 ID=FC925792; Name=FC925792; organism=Citrus clementina; type=EST; length=615bp
CTTGATACCGGTTGCAATCGTGGTTCTTTTGACTGTGATGACTGTATAGG
GGACTACAAATTTCTAGATGGAGTCTGCCCAACGAAGATACGAAATACTT
CGATCCATGATTTTGGAATATTCCAGGATGCGCTTCAGTCTGGTATAGTG
GAGGTGACAGATTTTCCACAGAAGTTCTTACATTGTTTTCGATGGGGCCT
GAGAAACCTGAGTTGTATTGGTCAGAACCTGCAAACAAGTAGCAATTCGT
GGGAAAACTTCTTTGTTATTTTGGTTACCATCTGCGGTTTGTTGTTATTG
CTTTTTCTCTTTGGAAATATGCAGATGTATCTGGAATCCAAAGCTTTGAA
ATCAAAGGAGATGAGTGTGAGGATGCAAGAGATTAATGAGTGGATGCCCA
TTGAAAAGCTCTCCCAGTCTGTTCAACAACAGCTTAAGATATACCAGCGA
TACGTATGGCGAAAACCCAATAATATTGATGTAGAGAGCACACTCAGTAG
TCTTCCTAAAGAACTCATAAGAAATATAAAGCACGAACTTTGCTTAGAGC
TGCTGAAGAGTGTAGAAGAGTTTAAGAAGTTAAATGAAGCAATATTGGAT
GCCCTCTGTGATTGT
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