FC925794

Overview
NameFC925794
Unique NameFC925794
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length464
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC925794 vs. ExPASy Swiss-Prot
Match: PPIA_DICDI (Peptidyl-prolyl cis-trans isomerase A OS=Dictyostelium discoideum GN=ppiA PE=1 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 7.784e-57
Identity = 57/80 (71.25%), Postives = 66/80 (82.50%), Query Frame = 2
Query:   17 INPSKMPNPKVFFHMTVGGPPAGRFVMELFADVTPRTAENFPALCTGEKGIGKSGKPLHYKGSSFHRVIPGFMCQGGDFT 256
            + P+   NP+VFF +T+GG  AG+ VMEL+A+  P+TAENF ALCTGEKGIGKSGKPL YKGSSFHRVI  FMCQGGDFT
Sbjct:    4 VKPTSPENPRVFFDITIGGVEAGKVVMELYANTVPKTAENFRALCTGEKGIGKSGKPLSYKGSSFHRVITNFMCQGGDFT 83          

HSP 2 Score: 115.931 bits (289), Expect = 7.784e-57
Identity = 53/68 (77.94%), Postives = 57/68 (83.82%), Query Frame = 3
Query:  261 GNGTGGQSIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMD 464
            GNGTGG+SIYG+KFADENF  KH G G LSMANAG  TNGSQFF+C A T+WLDGKHVVFG V EGMD
Sbjct:   85 GNGTGGESIYGNKFADENFKLKHFGQGTLSMANAGANTNGSQFFICVAPTDWLDGKHVVFGFVTEGMD 152          
BLAST of FC925794 vs. ExPASy Swiss-Prot
Match: PPID_RHIOR (Peptidyl-prolyl cis-trans isomerase D OS=Rhizopus oryzae GN=cyp12 PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 9.772e-51
Identity = 51/75 (68.00%), Postives = 59/75 (78.67%), Query Frame = 2
Query:   32 MPNPKVFFHMTVGGPPAGRFVMELFADVTPRTAENFPALCTGEKGIGKSGKPLHYKGSSFHRVIPGFMCQGGDFT 256
            M NP+V+F +T+G  P GR V ELF D+ P+TAENF ALCTGEKG GKSGKPL Y+GS FHR+I  FM QGGDFT
Sbjct:    1 MSNPRVYFDITIGNKPEGRIVFELFKDIVPKTAENFRALCTGEKGEGKSGKPLSYQGSLFHRIIKNFMIQGGDFT 75          

HSP 2 Score: 107.842 bits (268), Expect = 9.772e-51
Identity = 51/73 (69.86%), Postives = 58/73 (79.45%), Query Frame = 3
Query:  240 RGETSPAGNGTGGQSIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEG 458
            +G    AGNGTGG+SIYG KF DENFV KH  P +LSMANAGPGTNGSQFF+ T  T  LDGKHVVFG+V++G
Sbjct:   70 QGGDFTAGNGTGGESIYGEKFEDENFVLKHEKPFLLSMANAGPGTNGSQFFITTVPTPHLDGKHVVFGKVLKG 142          
BLAST of FC925794 vs. ExPASy Swiss-Prot
Match: PPID_NEUCR (41 kDa peptidyl-prolyl cis-trans isomerase OS=Neurospora crassa GN=cyp-41 PE=2 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 1.273e-50
Identity = 52/76 (68.42%), Postives = 60/76 (78.95%), Query Frame = 2
Query:   29 KMPNPKVFFHMTVGGPPAGRFVMELFADVTPRTAENFPALCTGEKGIGKSGKPLHYKGSSFHRVIPGFMCQGGDFT 256
            K    +VFF +T+GG  AGR V EL+ D+ P+TAENF ALCTGEKG+GK GKPLHYKGS+FHRVI  FM QGGDFT
Sbjct:    8 KQARSRVFFDITIGGKAAGRIVFELYNDIVPKTAENFRALCTGEKGVGKLGKPLHYKGSTFHRVIKQFMIQGGDFT 83          

HSP 2 Score: 106.301 bits (264), Expect = 1.273e-50
Identity = 51/73 (69.86%), Postives = 57/73 (78.08%), Query Frame = 3
Query:  240 RGETSPAGNGTGGQSIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEG 458
            +G    AGNGTGG+SIYG+KF DENF  KH  P +LSMANAGPGTNGSQFFV T  T  LDGKHVVFG+V+ G
Sbjct:   78 QGGDFTAGNGTGGESIYGAKFEDENFQLKHDRPFLLSMANAGPGTNGSQFFVTTVPTPHLDGKHVVFGEVLSG 150          
BLAST of FC925794 vs. ExPASy Swiss-Prot
Match: PPIF_HUMAN (Peptidyl-prolyl cis-trans isomerase, mitochondrial OS=Homo sapiens GN=PPIF PE=1 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.069e-49
Identity = 54/67 (80.60%), Postives = 59/67 (88.06%), Query Frame = 3
Query:  264 NGTGGQSIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMD 464
            NGTGG+SIYGS+F DENF  KH GPG+LSMANAGP TNGSQFF+CT KT+WLDGKHVVFG V EGMD
Sbjct:  113 NGTGGKSIYGSRFPDENFTLKHVGPGVLSMANAGPNTNGSQFFICTIKTDWLDGKHVVFGHVKEGMD 179          

HSP 2 Score: 95.1301 bits (235), Expect = 1.069e-49
Identity = 47/77 (61.04%), Postives = 52/77 (67.53%), Query Frame = 2
Query:   26 SKMPNPKVFFHMTVGGPPAGRFVMELFADVTPRTAENFPALCTGEKGIGKSGKPLHYKGSSFHRVIPGFMCQGGDFT 256
            S   NP V+  +   G P GR V+EL ADV P+TAENF ALCTGEKG G       YKGS+FHRVIP FMCQ GDFT
Sbjct:   41 SSSGNPLVYLDVDANGKPLGRVVLELKADVVPKTAENFRALCTGEKGFG-------YKGSTFHRVIPSFMCQAGDFT 110          
BLAST of FC925794 vs. ExPASy Swiss-Prot
Match: PPIF_RAT (Peptidyl-prolyl cis-trans isomerase, mitochondrial OS=Rattus norvegicus GN=Ppif PE=1 SV=2)

HSP 1 Score: 123.25 bits (308), Expect = 1.394e-49
Identity = 54/67 (80.60%), Postives = 59/67 (88.06%), Query Frame = 3
Query:  264 NGTGGQSIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMD 464
            NGTGG+SIYGS+F DENF  KH GPG+LSMANAGP TNGSQFF+CT KT+WLDGKHVVFG V EGMD
Sbjct:  112 NGTGGKSIYGSRFPDENFTLKHVGPGVLSMANAGPNTNGSQFFICTIKTDWLDGKHVVFGHVKEGMD 178          

HSP 2 Score: 94.7449 bits (234), Expect = 1.394e-49
Identity = 47/77 (61.04%), Postives = 52/77 (67.53%), Query Frame = 2
Query:   26 SKMPNPKVFFHMTVGGPPAGRFVMELFADVTPRTAENFPALCTGEKGIGKSGKPLHYKGSSFHRVIPGFMCQGGDFT 256
            S   NP V+  +   G P GR V+EL ADV P+TAENF ALCTGEKG G       YKGS+FHRVIP FMCQ GDFT
Sbjct:   40 SSSQNPLVYLDVGADGQPLGRVVLELKADVVPKTAENFRALCTGEKGFG-------YKGSTFHRVIPAFMCQAGDFT 109          
BLAST of FC925794 vs. ExPASy Swiss-Prot
Match: PPIF_MOUSE (Peptidyl-prolyl cis-trans isomerase, mitochondrial OS=Mus musculus GN=Ppif PE=2 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.817e-49
Identity = 54/67 (80.60%), Postives = 59/67 (88.06%), Query Frame = 3
Query:  264 NGTGGQSIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMD 464
            NGTGG+SIYGS+F DENF  KH GPG+LSMANAGP TNGSQFF+CT KT+WLDGKHVVFG V EGMD
Sbjct:  112 NGTGGRSIYGSRFPDENFTLKHVGPGVLSMANAGPNTNGSQFFICTIKTDWLDGKHVVFGHVKEGMD 178          

HSP 2 Score: 94.3597 bits (233), Expect = 1.817e-49
Identity = 47/77 (61.04%), Postives = 52/77 (67.53%), Query Frame = 2
Query:   26 SKMPNPKVFFHMTVGGPPAGRFVMELFADVTPRTAENFPALCTGEKGIGKSGKPLHYKGSSFHRVIPGFMCQGGDFT 256
            S   NP V+  +   G P GR V+EL ADV P+TAENF ALCTGEKG G       YKGS+FHRVIP FMCQ GDFT
Sbjct:   40 SSSGNPLVYLDVGADGQPLGRVVLELKADVVPKTAENFRALCTGEKGFG-------YKGSTFHRVIPAFMCQAGDFT 109          
BLAST of FC925794 vs. ExPASy Swiss-Prot
Match: PPIF_BOVIN (Peptidyl-prolyl cis-trans isomerase, mitochondrial OS=Bos taurus GN=PPIF PE=1 SV=2)

HSP 1 Score: 122.094 bits (305), Expect = 4.022e-49
Identity = 54/67 (80.60%), Postives = 59/67 (88.06%), Query Frame = 3
Query:  264 NGTGGQSIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMD 464
            NGTGG+SIYGS+F DENF  KH GPG+LSMANAGP TNGSQFF+CT KT+WLDGKHVVFG V EGMD
Sbjct:  114 NGTGGKSIYGSRFPDENFKLKHEGPGVLSMANAGPNTNGSQFFICTIKTDWLDGKHVVFGHVKEGMD 180          

HSP 2 Score: 94.3597 bits (233), Expect = 4.022e-49
Identity = 47/77 (61.04%), Postives = 52/77 (67.53%), Query Frame = 2
Query:   26 SKMPNPKVFFHMTVGGPPAGRFVMELFADVTPRTAENFPALCTGEKGIGKSGKPLHYKGSSFHRVIPGFMCQGGDFT 256
            S   NP V+  +   G P GR V+EL ADV P+TAENF ALCTGEKG G       YKGS+FHRVIP FMCQ GDFT
Sbjct:   42 SSSGNPLVYLDVGADGQPLGRVVLELKADVVPKTAENFRALCTGEKGFG-------YKGSTFHRVIPSFMCQAGDFT 111          
BLAST of FC925794 vs. ExPASy Swiss-Prot
Match: PPID_MOUSE (40 kDa peptidyl-prolyl cis-trans isomerase OS=Mus musculus GN=Ppid PE=1 SV=3)

HSP 1 Score: 111.309 bits (277), Expect = 3.325e-48
Identity = 51/83 (61.45%), Postives = 61/83 (73.49%), Query Frame = 2
Query:   11 PLINPSKMPNPKVFFHMTVGGPPAGRFVMELFADVTPRTAENFPALCTGEKGIGK-SGKPLHYKGSSFHRVIPGFMCQGGDFT 256
            P   PS   NP+VFF + +GG   GR V+ELFAD+ P+TAENF ALCTGEKG G  +GKPLH+KG  FHR+I  FM QGGDF+
Sbjct:    6 PAAKPSNSKNPRVFFDVDIGGERVGRIVLELFADIVPKTAENFRALCTGEKGTGSTTGKPLHFKGCPFHRIIKKFMIQGGDFS 88          

HSP 2 Score: 102.064 bits (253), Expect = 3.325e-48
Identity = 47/66 (71.21%), Postives = 53/66 (80.30%), Query Frame = 3
Query:  264 NGTGGQSIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGM 461
            NGTGG+SIYG KF DENF  KH   G+LSMANAGP TNGSQFF+ T  T  LDGKHVVFGQV++G+
Sbjct:   91 NGTGGESIYGEKFEDENFHYKHDREGLLSMANAGPNTNGSQFFITTVPTPHLDGKHVVFGQVIKGL 156          
BLAST of FC925794 vs. ExPASy Swiss-Prot
Match: PPID_BOVIN (40 kDa peptidyl-prolyl cis-trans isomerase OS=Bos taurus GN=PPID PE=1 SV=6)

HSP 1 Score: 112.079 bits (279), Expect = 7.361e-48
Identity = 52/83 (62.65%), Postives = 62/83 (74.70%), Query Frame = 2
Query:   11 PLINPSKMPNPKVFFHMTVGGPPAGRFVMELFADVTPRTAENFPALCTGEKGIG-KSGKPLHYKGSSFHRVIPGFMCQGGDFT 256
            P   PS   NP+VFF + +GG   GR V+ELFAD+ P+TAENF ALCTGEKGIG  +GKPLH+KG  FHR+I  FM QGGDF+
Sbjct:    6 PQAKPSNPSNPRVFFDVDIGGERVGRIVLELFADIVPKTAENFRALCTGEKGIGPTTGKPLHFKGCPFHRIIKKFMIQGGDFS 88          

HSP 2 Score: 100.138 bits (248), Expect = 7.361e-48
Identity = 47/66 (71.21%), Postives = 52/66 (78.79%), Query Frame = 3
Query:  264 NGTGGQSIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGM 461
            NGTGG+SIYG KF DENF  KH   G+LSMANAG  TNGSQFF+ T  T  LDGKHVVFGQV++GM
Sbjct:   91 NGTGGESIYGEKFEDENFHYKHDKEGLLSMANAGSNTNGSQFFITTVPTPHLDGKHVVFGQVIKGM 156          
BLAST of FC925794 vs. ExPASy Swiss-Prot
Match: PPID_RAT (40 kDa peptidyl-prolyl cis-trans isomerase OS=Rattus norvegicus GN=Ppid PE=1 SV=3)

HSP 1 Score: 109.768 bits (273), Expect = 9.594e-48
Identity = 51/83 (61.45%), Postives = 61/83 (73.49%), Query Frame = 2
Query:   11 PLINPSKMPNPKVFFHMTVGGPPAGRFVMELFADVTPRTAENFPALCTGEKGIG-KSGKPLHYKGSSFHRVIPGFMCQGGDFT 256
            P   PS   NP+VFF + +GG   GR V+ELFAD+ P+TAENF ALCTGEKG G  +GKPLH+KG  FHR+I  FM QGGDF+
Sbjct:    6 PAGKPSNSKNPRVFFDVDIGGERVGRIVLELFADIVPKTAENFRALCTGEKGTGPTTGKPLHFKGCPFHRIIKKFMIQGGDFS 88          

HSP 2 Score: 102.064 bits (253), Expect = 9.594e-48
Identity = 47/66 (71.21%), Postives = 53/66 (80.30%), Query Frame = 3
Query:  264 NGTGGQSIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGM 461
            NGTGG+SIYG KF DENF  KH   G+LSMANAGP TNGSQFF+ T  T  LDGKHVVFGQV++G+
Sbjct:   91 NGTGGESIYGEKFEDENFHYKHDREGLLSMANAGPNTNGSQFFITTVPTPHLDGKHVVFGQVIKGL 156          
The following BLAST results are available for this feature:
BLAST of FC925794 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 240
Match NameE-valueIdentityDescription
PPIA_DICDI7.784e-5771.25Peptidyl-prolyl cis-trans isomerase A OS=Dictyoste... [more]
PPID_RHIOR9.772e-5168.00Peptidyl-prolyl cis-trans isomerase D OS=Rhizopus ... [more]
PPID_NEUCR1.273e-5068.4241 kDa peptidyl-prolyl cis-trans isomerase OS=Neur... [more]
PPIF_HUMAN1.069e-4980.60Peptidyl-prolyl cis-trans isomerase, mitochondrial... [more]
PPIF_RAT1.394e-4980.60Peptidyl-prolyl cis-trans isomerase, mitochondrial... [more]
PPIF_MOUSE1.817e-4980.60Peptidyl-prolyl cis-trans isomerase, mitochondrial... [more]
PPIF_BOVIN4.022e-4980.60Peptidyl-prolyl cis-trans isomerase, mitochondrial... [more]
PPID_MOUSE3.325e-4861.4540 kDa peptidyl-prolyl cis-trans isomerase OS=Mus ... [more]
PPID_BOVIN7.361e-4862.6540 kDa peptidyl-prolyl cis-trans isomerase OS=Bos ... [more]
PPID_RAT9.594e-4861.4540 kDa peptidyl-prolyl cis-trans isomerase OS=Ratt... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAP11YK22FM1 TF Citrus clementina cDNA clone KN0AAP11YK22, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925794 ID=FC925794; Name=FC925794; organism=Citrus clementina; type=EST; length=464bp
TGTTTTTTTCCCCCTCATCAACCCATCCAAAATGCCAAACCCCAAAGTGT
TCTTCCACATGACCGTCGGCGGTCCGCCCGCCGGCAGGTTCGTGATGGAG
CTCTTCGCCGATGTCACCCCCCGAACCGCCGAGAACTTCCCCGCCCTCTG
CACCGGCGAGAAAGGCATCGGCAAGTCCGGCAAGCCACTCCACTACAAGG
GCTCGTCCTTCCACCGTGTGATCCCCGGATTCATGTGCCAGGGGGGAGAC
TTCACCCGCCGGAAACGGAACCGGAGGCCAATCAATCTACGGCTCAAAAT
TCGCCGATGAGAACTTCGTGAAGAAGCACACCGGCCCCGGAATCCTCTCC
ATGGCGAATGCCGGACCCGGAACCAACGGATCTCAGTTCTTCGTCTGTAC
GGCCAAGACCGAGTGGCTCGATGGGAAGCACGTTGTGTTCGGTCAAGTCG
TCGAAGGAATGGAC
back to top