FC926084

Overview
NameFC926084
Unique NameFC926084
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length655
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC926084 vs. ExPASy Swiss-Prot
Match: SPT6H_MOUSE (Transcription elongation factor SPT6 OS=Mus musculus GN=Supt6h PE=1 SV=2)

HSP 1 Score: 118.627 bits (296), Expect = 2.807e-26
Identity = 67/217 (30.88%), Postives = 116/217 (53.46%), Query Frame = 3
Query:    3 LKDDIYEIIFKMVEEHPRDVGHEMDELSIVYGDESLPRLYENSRISSDQLPGQKGNVKRAVALGRYLQNPLAMVATLCGPGREILSWKLCPLENFLTPDEKYGMIEQVMVDVTNQVGLDINLAIHREWQFAPLQFISGLGPRKAASLQRSLVRAGA-IFTRKDFVTAHGLGKKVFVNAVGFLRVRRSGQAASSSQFIDLLDDTRIHPESYGLAQELA 650
            L +D+  I+      H  D G ++  + +   D  L  LY NS+ S  +       +++AV+L R +Q+PL   A +C    +IL  K  PL+  +  +E    +    ++  N+VG+D+N AI   +  A +Q++ GLGPRK   L + L +    + +R   VT   +G KVF+N  GFL++  +    S+  +I++LD +R+HPE+Y  A+++A
Sbjct:  860 LTEDVKRIV------HELDQGQQLSSIGVELVDNELAILYMNSKKSEAEFRDYPPVLRQAVSLARRIQDPLIEFAQVCSSDEDILCLKFHPLQEHVVKEELLNALYCEFINRVNEVGVDVNRAIAHPYSQALIQYVCGLGPRKGTHLLKILKQNNTRLESRTQLVTMCHMGPKVFMNCAGFLKIDTASLGDSTDSYIEVLDGSRVHPETYEWARKMA 1070          
BLAST of FC926084 vs. ExPASy Swiss-Prot
Match: SPT6H_HUMAN (Transcription elongation factor SPT6 OS=Homo sapiens GN=SUPT6H PE=1 SV=2)

HSP 1 Score: 117.857 bits (294), Expect = 4.788e-26
Identity = 64/202 (31.68%), Postives = 110/202 (54.46%), Query Frame = 3
Query:   48 HPRDVGHEMDELSIVYGDESLPRLYENSRISSDQLPGQKGNVKRAVALGRYLQNPLAMVATLCGPGREILSWKLCPLENFLTPDEKYGMIEQVMVDVTNQVGLDINLAIHREWQFAPLQFISGLGPRKAASLQRSLVRAGA-IFTRKDFVTAHGLGKKVFVNAVGFLRVRRSGQAASSSQFIDLLDDTRIHPESYGLAQELA 650
            H  D G ++  + +   D  L  LY NS+ S  +       +++AV+L R +Q+PL   A +C    +IL  K  PL+  +  +E    +    ++  N+VG+D+N AI   +  A +Q++ GLGPRK   L + L +    + +R   VT   +G KVF+N  GFL++  +    S+  +I++LD +R+HPE+Y  A+++A
Sbjct:  869 HELDQGQQLSSIGVELVDNELAILYMNSKKSEAEFRDYPPVLRQAVSLARRIQDPLIEFAQVCSSDEDILCLKFHPLQEHVVKEELLNALYCEFINRVNEVGVDVNRAIAHPYSQALIQYVCGLGPRKGTHLLKILKQNNTRLESRTQLVTMCHMGPKVFMNCAGFLKIDTASLGDSTDSYIEVLDGSRVHPETYEWARKMA 1070          
BLAST of FC926084 vs. ExPASy Swiss-Prot
Match: SPT6_CANAL (Transcription elongation factor SPT6 OS=Candida albicans GN=SPT6 PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 2.376e-25
Identity = 66/219 (30.14%), Postives = 116/219 (52.97%), Query Frame = 3
Query:   15 IYEIIFKMVEEHPRDVGHEMDE-----LSIVYGDESLPRLYENSRISSDQLPGQKGNVKRAVALGRYLQNPLAMVATLCGPGREILSWKLCPLENFLTPDEKYGMIEQVMVDVTNQVGLDINLAIHREWQFAPLQFISGLGPRKAASLQRSLVR--AGAIFTRKDFVTAHGLGKKVFVNAVGFLRVRRSGQAASSSQFIDLLDDTRIHPESYGLAQELA 650
            ++++++  V E+   V  E D+     + +++G +   RLY+NS  +  + P +   VK A++LGRYLQ+PL    TL   G +ILS      +  ++ D    ++E   VD+ N VG+DIN ++        L+++ GLGPRKA+ + R++ +     + TR   +      + +F+N    L++  +         I++LD TRIHPE Y LA ++A
Sbjct:  780 LHDVVYNFVSEYGISVKSEFDDGSSQLVKVIWGQDETARLYQNSERAKKEFPDKPTLVKYAISLGRYLQDPLLEYITL---GDDILSLTFHEHQKLISNDLVKEVVESAFVDLVNAVGVDINESVRDSRLAQTLKYVGGLGPRKASGMLRNIAQKLGSVLTTRSQLIEYELTTRTIFINCSAALKISLNKSINVKDFEIEILDTTRIHPEDYQLAMKMA 995          
BLAST of FC926084 vs. ExPASy Swiss-Prot
Match: SPT6_SCHPO (Transcription elongation factor spt6 OS=Schizosaccharomyces pombe GN=spt6 PE=1 SV=2)

HSP 1 Score: 111.309 bits (277), Expect = 4.482e-24
Identity = 66/205 (32.20%), Postives = 112/205 (54.63%), Query Frame = 3
Query:   39 VEEHPRDVGHEMDELSIVYGDESLPRLYENSRISSDQLPGQKGNVKRAVALGRYLQNPLAMVATLCGPGREILSWKLCPLENFLTPDEKYGMIEQVMVDVTNQVGLDINLAIHREWQFAPLQFISGLGPRKA-ASLQRSLVRAGAIFTRKDFVTAHGLGKKVFVNAVGFLRVRRSGQAASSSQFIDLLDDTRIHPESYGLAQELA 650
            + +H +D     + + ++  ++ + RLY+NS  + D+ P         VAL RY+QNPL   A +   GR+++S    P ++ L PD  +  +E  +VD+++ VG+DIN A+  +++   L +I+GLGPRKA   L++     G I  R D ++   + +KVF+N   F  +            +D+LD TRIH E Y LA+++A
Sbjct:  756 IRQHVQDSLTSHEPVDLIMVNDEVARLYQNSTRAVDEFPTLPTISCYCVALARYVQNPLFEYAAM---GRDLMSLSFDPWQHLLPPDVLWKYLETALVDISSLVGIDINEAVTNKYEANILPYIAGLGPRKADYVLKKIAATGGRIDNRSDLISKQIMSRKVFINCSSFFIIPN-----DEYPNMDILDSTRIHNEDYELARKMA 952          
BLAST of FC926084 vs. ExPASy Swiss-Prot
Match: SPT6H_DROME (Transcription elongation factor SPT6 OS=Drosophila melanogaster GN=Spt6 PE=1 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 4.482e-24
Identity = 64/217 (29.49%), Postives = 113/217 (52.07%), Query Frame = 3
Query:    3 LKDDIYEIIFKMVEEHPRDVGHEMDELSIVYGDESLPRLYENSRISSDQLPGQKGNVKRAVALGRYLQNPLAMVATLCGPGREILSWKLCPLENFLTPDEKYGMIEQVMVDVTNQVGLDINLAIHREWQFAPLQFISGLGPRKAASLQRSLVRAG-AIFTRKDFVTAHGLGKKVFVNAVGFLRVRRSGQAASSSQFIDLLDDTRIHPESYGLAQELA 650
            ++ DI EI+      H  +   +   + +   D  L ++Y NS+            +K+A +L R +Q+PL   + LC    EIL  +  PL+  +  ++    +    ++ T++VGLDINL +        LQ+I GLGPRK  +L + L ++   +  R   VT   LG +VF+N  GF+++  S    S+  ++++LD +R+HPE+Y  A+++A
Sbjct:  864 IQADIKEIL------HELETSEQFPPIEVEIIDNELAKIYANSKKGESDFKEYPPLLKQAASLARKMQDPLVEYSQLCDADDEILCLRYHPLQERVPREQLLEQLSLQFINRTSEVGLDINLMVQNSRTINLLQYICGLGPRKGQALLKLLKQSNQRLENRTQLVTVCHLGPRVFINCSGFIKIDTSSLGDSTEAYVEVLDGSRVHPETYEWARKMA 1074          
BLAST of FC926084 vs. ExPASy Swiss-Prot
Match: SPT6_CANGA (Transcription elongation factor SPT6 OS=Candida glabrata GN=SPT6 PE=1 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 2.224e-23
Identity = 65/192 (33.85%), Postives = 103/192 (53.65%), Query Frame = 3
Query:   81 LSIVYGDESLPRLYENSRISSDQLPGQKGNVKRAVALGRYLQNPLAMVATLCGPGREILSWKLCPLENFLTPDEKYGMIEQVMVDVTNQVGLDINLAIHREWQFAPLQFISGLGPRKAASLQRSLVRAG-AIFTRKDFVTAHGLGKKVFVNAVGFLRVRRSGQAASSSQF-IDLLDDTRIHPESYGLAQELA 650
            + I+Y ++ +   Y+NS  ++ + P +   VK  +AL RY+ +PL   A L     E+ S  + P ++FL+P+     IE   VD+ N VG+++N A    +  + L+F+SG G RKA     SL R    +  R+  +T + L K +F+N+ GFL +  S +         D LD TRIHPE Y LA ++A
Sbjct:  843 IPIIYVEDEIAIRYQNSERAAQEFPNKPPYVKYCIALARYMHSPLMEYANLSP--EELKSLSIHPFQSFLSPEYLNRAIETAFVDIVNLVGVEVNKATDNSYYASVLRFVSGFGKRKAIDFLESLQRLNEPLLARQQLITHNILHKVIFMNSAGFLYISWSKKRQRYEDLEHDQLDSTRIHPEDYHLATKVA 1032          
BLAST of FC926084 vs. ExPASy Swiss-Prot
Match: SPT6H_DANRE (Transcription elongation factor SPT6 OS=Danio rerio GN=supt6h PE=1 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 2.905e-23
Identity = 60/185 (32.43%), Postives = 103/185 (55.68%), Query Frame = 3
Query:   99 DESLPRLYENSRISSDQLPGQKGNVKRAVALGRYLQNPLAMVATLCGPGREILSWKLCPLENFLTPDEKYGMIEQVMVDVTNQVGLDINLAIHREWQFAPLQFISGLGPRKAASLQRSLVRAGA-IFTRKDFVTAHGLGKKVFVNAVGFLRVRRSGQAASSSQFIDLLDDTRIHPESYGLAQELA 650
            D  L  LY NS+ S          +++AV++ R +Q+PL   A +C    +IL  KL PL+  +  +E    +    ++  N+VG+D+N AI   +  + +Q+I GLGPRK + L + L +    +  R   VT   +G KVF+N  GF+++  +    S+  +I++LD +R+HPE+Y  A+++A
Sbjct:  877 DNELAVLYMNSKKSEADFRDYPPLLRQAVSVARKIQDPLVEFAQVCSTDDDILCLKLHPLQEHVVKEELLSALYCEFINRVNEVGVDVNRAIAHPYTQSLVQYICGLGPRKGSHLLKILKQNNTRLENRTQLVTMCHMGPKVFINCAGFIKIDTASLGDSTDSYIEVLDGSRVHPETYEWARKMA 1061          
BLAST of FC926084 vs. ExPASy Swiss-Prot
Match: SPT6_GIBZE (Transcription elongation factor SPT6 OS=Gibberella zeae GN=SPT6 PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.220e-21
Identity = 68/209 (32.54%), Postives = 109/209 (52.15%), Query Frame = 3
Query:   45 EHPRDVGHEMDELSIVYGDESLPRLYENSRISSDQLPGQKGNVKRAVALGRYLQNPLAMVATLCGPGREILSWKLCPLENFLTPDEKYGMIEQVMVDVTNQVGLDINLAIHREWQFAPLQFISGLGPRKAASLQRSL-VRAGAIFTRKDFVTAHGLGK------KVFVNAVGFLRVRRSGQAASSSQFIDLLDDTRIHPESYGLAQELA 650
            E P    +  + L +V  ++ + RLY++S  +  + P      +  VAL RY+QNP+   A L   G+++ S    P +N L  D+    ++  MVD+ N  G+DIN A++  +    L ++SGLGPRKA S+ +++    GA+ TR + V     GK      +V+ N   FL +       SS    D LD+TR+HPE Y L +++A
Sbjct:  799 EDPDTNDYRTEPLEVVVVNDEVARLYKDSPRALAEHPSLNPITRYCVALARYMQNPMKEYAAL---GKDVSSLSYHPCQNLLPADKLAKYLDSAMVDMVNLCGVDINEAMNDTYTANLLPYVSGLGPRKATSVIKAINANGGAVGTRDELVGDPDSGKLPVVGPRVWNNCASFLFIEYEATNPSS----DPLDNTRVHPEDYELGRKMA 1000          
BLAST of FC926084 vs. ExPASy Swiss-Prot
Match: SPT6_YEAST (Transcription elongation factor SPT6 OS=Saccharomyces cerevisiae GN=SPT6 PE=1 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 1.594e-21
Identity = 61/192 (31.77%), Postives = 102/192 (53.12%), Query Frame = 3
Query:   81 LSIVYGDESLPRLYENSRISSDQLPGQKGNVKRAVALGRYLQNPLAMVATLCGPGREILSWKLCPLENFLTPDEKYGMIEQVMVDVTNQVGLDINLAIHREWQFAPLQFISGLGPRKAASLQRSLVRAG-AIFTRKDFVTAHGLGKKVFVNAVGFLRVRRSGQAASSSQF-IDLLDDTRIHPESYGLAQELA 650
            + I+Y ++ +   Y+NS  ++ + P +   VK  +AL RY+ +PL   A L     E+ S  + P +N L+ ++    +E   VD+ N V +++N A    +  + L++ISG G RKA    +SL R    +  R+  +T + L K +F+N+ GFL +  + +         D LD TRIHPE Y LA ++A
Sbjct:  844 IPIIYVEDEVAIRYQNSERAAQEFPNKPPLVKYCIALARYMHSPLLEYANLTS--EEVRSLSIHPHQNLLSSEQLSWALETAFVDIVNLVSVEVNKATDNNYYASALKYISGFGKRKAIDFLQSLQRLNEPLLARQQLITHNILHKTIFMNSAGFLYISWNEKRQKYEDLEHDQLDSTRIHPEDYHLATKVA 1033          
BLAST of FC926084 vs. ExPASy Swiss-Prot
Match: SPT6H_CAEBR (Suppressor of Ty 6 homolog OS=Caenorhabditis briggsae GN=emb-5 PE=2 SV=2)

HSP 1 Score: 100.908 bits (250), Expect = 6.057e-21
Identity = 63/217 (29.03%), Postives = 109/217 (50.23%), Query Frame = 3
Query:    3 LKDDIYEIIFKMVEEHPRDVGHEMDELSIVYGDESLPRLYENSRISSDQLPGQKGNVKRAVALGRYLQNPLAMVATLCGPGREILSWKLCPLENFLTPDEKYGMIEQVMVDVTNQVGLDINLAIHREWQFAPLQFISGLGPRKAASLQRSL-VRAGAIFTRKDFVTAHGLGKKVFVNAVGFLRVRRSGQAASSSQFIDLLDDTRIHPESYGLAQELA 650
            LK D+ E + ++  +          ++++   D  L ++Y  S IS  + P     +++AV+L R L +P+   A L     +I    L PL+  +  +    ++   +V+  N+ G+DIN           LQF  GLGPRKA SL +S+      I +R   V    LG KVF+N  GF+R+     +  +  ++++LD +R+HPE+Y  A+++A
Sbjct:  827 LKRDLEEAVAELYSQ-----SKIFSQINVYLMDNELAKVYMRSNISIAENPDHPPTLRQAVSLARQLLDPIPEYAHLWNSDEDIFCLSLHPLQRDIDQEILAQLLNHELVNRVNEEGVDINKCAEFPHYTNMLQFTCGLGPRKATSLLKSIKANDNLIESRSKLVVGCKLGPKVFMNCAGFIRIDTRRVSDKTDAYVEVLDGSRVHPETYEWARKMA 1038          
The following BLAST results are available for this feature:
BLAST of FC926084 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 20
Match NameE-valueIdentityDescription
SPT6H_MOUSE2.807e-2630.88Transcription elongation factor SPT6 OS=Mus muscul... [more]
SPT6H_HUMAN4.788e-2631.68Transcription elongation factor SPT6 OS=Homo sapie... [more]
SPT6_CANAL2.376e-2530.14Transcription elongation factor SPT6 OS=Candida al... [more]
SPT6_SCHPO4.482e-2432.20Transcription elongation factor spt6 OS=Schizosacc... [more]
SPT6H_DROME4.482e-2429.49Transcription elongation factor SPT6 OS=Drosophila... [more]
SPT6_CANGA2.224e-2333.85Transcription elongation factor SPT6 OS=Candida gl... [more]
SPT6H_DANRE2.905e-2332.43Transcription elongation factor SPT6 OS=Danio reri... [more]
SPT6_GIBZE1.220e-2132.54Transcription elongation factor SPT6 OS=Gibberella... [more]
SPT6_YEAST1.594e-2131.77Transcription elongation factor SPT6 OS=Saccharomy... [more]
SPT6H_CAEBR6.057e-2129.03Suppressor of Ty 6 homolog OS=Caenorhabditis brigg... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP13YC09FM1 TF Citrus clementina cDNA clone KN0AAP13YC09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC926084 ID=FC926084; Name=FC926084; organism=Citrus clementina; type=EST; length=655bp
CACTGAAAGATGATATTTATGAGATCATTTTCAAGATGGTGGAGGAACAT
CCAAGAGATGTTGGGCATGAGATGGATGAGTTAAGCATTGTATATGGGGA
TGAATCTTTGCCACGCCTTTATGAAAATTCTCGAATTTCATCTGACCAGC
TACCTGGGCAGAAAGGCAATGTTAAGCGTGCTGTTGCGCTTGGGCGTTAT
CTGCAAAATCCGTTGGCAATGGTTGCAACATTATGTGGACCTGGGAGGGA
GATCTTGTCTTGGAAGCTTTGTCCCTTGGAGAATTTTCTCACTCCAGATG
AGAAGTATGGAATGATTGAACAGGTTATGGTGGATGTTACGAACCAGGTT
GGTTTGGACATTAATTTGGCTATACACCGTGAATGGCAATTTGCTCCTTT
GCAATTCATATCTGGCCTTGGCCCCAGAAAGGCAGCATCTTTACAGAGAT
CCCTAGTGAGAGCTGGAGCAATTTTTACTCGTAAGGACTTTGTAACTGCT
CACGGGCTTGGCAAAAAGGTGTTTGTGAATGCAGTTGGCTTTCTGCGTGT
TCGGAGGAGCGGGCAGGCTGCTAGCAGCAGTCAGTTCATTGACTTGTTGG
ATGATACAAGAATACATCCAGAATCTTATGGTCTTGCGCAAGAGTTGGCC
AAGGA
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