FC926084
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC926084 vs. ExPASy Swiss-Prot
Match: SPT6H_MOUSE (Transcription elongation factor SPT6 OS=Mus musculus GN=Supt6h PE=1 SV=2) HSP 1 Score: 118.627 bits (296), Expect = 2.807e-26 Identity = 67/217 (30.88%), Postives = 116/217 (53.46%), Query Frame = 3 Query: 3 LKDDIYEIIFKMVEEHPRDVGHEMDELSIVYGDESLPRLYENSRISSDQLPGQKGNVKRAVALGRYLQNPLAMVATLCGPGREILSWKLCPLENFLTPDEKYGMIEQVMVDVTNQVGLDINLAIHREWQFAPLQFISGLGPRKAASLQRSLVRAGA-IFTRKDFVTAHGLGKKVFVNAVGFLRVRRSGQAASSSQFIDLLDDTRIHPESYGLAQELA 650 L +D+ I+ H D G ++ + + D L LY NS+ S + +++AV+L R +Q+PL A +C +IL K PL+ + +E + ++ N+VG+D+N AI + A +Q++ GLGPRK L + L + + +R VT +G KVF+N GFL++ + S+ +I++LD +R+HPE+Y A+++A Sbjct: 860 LTEDVKRIV------HELDQGQQLSSIGVELVDNELAILYMNSKKSEAEFRDYPPVLRQAVSLARRIQDPLIEFAQVCSSDEDILCLKFHPLQEHVVKEELLNALYCEFINRVNEVGVDVNRAIAHPYSQALIQYVCGLGPRKGTHLLKILKQNNTRLESRTQLVTMCHMGPKVFMNCAGFLKIDTASLGDSTDSYIEVLDGSRVHPETYEWARKMA 1070
BLAST of FC926084 vs. ExPASy Swiss-Prot
Match: SPT6H_HUMAN (Transcription elongation factor SPT6 OS=Homo sapiens GN=SUPT6H PE=1 SV=2) HSP 1 Score: 117.857 bits (294), Expect = 4.788e-26 Identity = 64/202 (31.68%), Postives = 110/202 (54.46%), Query Frame = 3 Query: 48 HPRDVGHEMDELSIVYGDESLPRLYENSRISSDQLPGQKGNVKRAVALGRYLQNPLAMVATLCGPGREILSWKLCPLENFLTPDEKYGMIEQVMVDVTNQVGLDINLAIHREWQFAPLQFISGLGPRKAASLQRSLVRAGA-IFTRKDFVTAHGLGKKVFVNAVGFLRVRRSGQAASSSQFIDLLDDTRIHPESYGLAQELA 650 H D G ++ + + D L LY NS+ S + +++AV+L R +Q+PL A +C +IL K PL+ + +E + ++ N+VG+D+N AI + A +Q++ GLGPRK L + L + + +R VT +G KVF+N GFL++ + S+ +I++LD +R+HPE+Y A+++A Sbjct: 869 HELDQGQQLSSIGVELVDNELAILYMNSKKSEAEFRDYPPVLRQAVSLARRIQDPLIEFAQVCSSDEDILCLKFHPLQEHVVKEELLNALYCEFINRVNEVGVDVNRAIAHPYSQALIQYVCGLGPRKGTHLLKILKQNNTRLESRTQLVTMCHMGPKVFMNCAGFLKIDTASLGDSTDSYIEVLDGSRVHPETYEWARKMA 1070
BLAST of FC926084 vs. ExPASy Swiss-Prot
Match: SPT6_CANAL (Transcription elongation factor SPT6 OS=Candida albicans GN=SPT6 PE=3 SV=1) HSP 1 Score: 115.546 bits (288), Expect = 2.376e-25 Identity = 66/219 (30.14%), Postives = 116/219 (52.97%), Query Frame = 3 Query: 15 IYEIIFKMVEEHPRDVGHEMDE-----LSIVYGDESLPRLYENSRISSDQLPGQKGNVKRAVALGRYLQNPLAMVATLCGPGREILSWKLCPLENFLTPDEKYGMIEQVMVDVTNQVGLDINLAIHREWQFAPLQFISGLGPRKAASLQRSLVR--AGAIFTRKDFVTAHGLGKKVFVNAVGFLRVRRSGQAASSSQFIDLLDDTRIHPESYGLAQELA 650 ++++++ V E+ V E D+ + +++G + RLY+NS + + P + VK A++LGRYLQ+PL TL G +ILS + ++ D ++E VD+ N VG+DIN ++ L+++ GLGPRKA+ + R++ + + TR + + +F+N L++ + I++LD TRIHPE Y LA ++A Sbjct: 780 LHDVVYNFVSEYGISVKSEFDDGSSQLVKVIWGQDETARLYQNSERAKKEFPDKPTLVKYAISLGRYLQDPLLEYITL---GDDILSLTFHEHQKLISNDLVKEVVESAFVDLVNAVGVDINESVRDSRLAQTLKYVGGLGPRKASGMLRNIAQKLGSVLTTRSQLIEYELTTRTIFINCSAALKISLNKSINVKDFEIEILDTTRIHPEDYQLAMKMA 995
BLAST of FC926084 vs. ExPASy Swiss-Prot
Match: SPT6_SCHPO (Transcription elongation factor spt6 OS=Schizosaccharomyces pombe GN=spt6 PE=1 SV=2) HSP 1 Score: 111.309 bits (277), Expect = 4.482e-24 Identity = 66/205 (32.20%), Postives = 112/205 (54.63%), Query Frame = 3 Query: 39 VEEHPRDVGHEMDELSIVYGDESLPRLYENSRISSDQLPGQKGNVKRAVALGRYLQNPLAMVATLCGPGREILSWKLCPLENFLTPDEKYGMIEQVMVDVTNQVGLDINLAIHREWQFAPLQFISGLGPRKA-ASLQRSLVRAGAIFTRKDFVTAHGLGKKVFVNAVGFLRVRRSGQAASSSQFIDLLDDTRIHPESYGLAQELA 650 + +H +D + + ++ ++ + RLY+NS + D+ P VAL RY+QNPL A + GR+++S P ++ L PD + +E +VD+++ VG+DIN A+ +++ L +I+GLGPRKA L++ G I R D ++ + +KVF+N F + +D+LD TRIH E Y LA+++A Sbjct: 756 IRQHVQDSLTSHEPVDLIMVNDEVARLYQNSTRAVDEFPTLPTISCYCVALARYVQNPLFEYAAM---GRDLMSLSFDPWQHLLPPDVLWKYLETALVDISSLVGIDINEAVTNKYEANILPYIAGLGPRKADYVLKKIAATGGRIDNRSDLISKQIMSRKVFINCSSFFIIPN-----DEYPNMDILDSTRIHNEDYELARKMA 952
BLAST of FC926084 vs. ExPASy Swiss-Prot
Match: SPT6H_DROME (Transcription elongation factor SPT6 OS=Drosophila melanogaster GN=Spt6 PE=1 SV=1) HSP 1 Score: 111.309 bits (277), Expect = 4.482e-24 Identity = 64/217 (29.49%), Postives = 113/217 (52.07%), Query Frame = 3 Query: 3 LKDDIYEIIFKMVEEHPRDVGHEMDELSIVYGDESLPRLYENSRISSDQLPGQKGNVKRAVALGRYLQNPLAMVATLCGPGREILSWKLCPLENFLTPDEKYGMIEQVMVDVTNQVGLDINLAIHREWQFAPLQFISGLGPRKAASLQRSLVRAG-AIFTRKDFVTAHGLGKKVFVNAVGFLRVRRSGQAASSSQFIDLLDDTRIHPESYGLAQELA 650 ++ DI EI+ H + + + + D L ++Y NS+ +K+A +L R +Q+PL + LC EIL + PL+ + ++ + ++ T++VGLDINL + LQ+I GLGPRK +L + L ++ + R VT LG +VF+N GF+++ S S+ ++++LD +R+HPE+Y A+++A Sbjct: 864 IQADIKEIL------HELETSEQFPPIEVEIIDNELAKIYANSKKGESDFKEYPPLLKQAASLARKMQDPLVEYSQLCDADDEILCLRYHPLQERVPREQLLEQLSLQFINRTSEVGLDINLMVQNSRTINLLQYICGLGPRKGQALLKLLKQSNQRLENRTQLVTVCHLGPRVFINCSGFIKIDTSSLGDSTEAYVEVLDGSRVHPETYEWARKMA 1074
BLAST of FC926084 vs. ExPASy Swiss-Prot
Match: SPT6_CANGA (Transcription elongation factor SPT6 OS=Candida glabrata GN=SPT6 PE=1 SV=1) HSP 1 Score: 108.997 bits (271), Expect = 2.224e-23 Identity = 65/192 (33.85%), Postives = 103/192 (53.65%), Query Frame = 3 Query: 81 LSIVYGDESLPRLYENSRISSDQLPGQKGNVKRAVALGRYLQNPLAMVATLCGPGREILSWKLCPLENFLTPDEKYGMIEQVMVDVTNQVGLDINLAIHREWQFAPLQFISGLGPRKAASLQRSLVRAG-AIFTRKDFVTAHGLGKKVFVNAVGFLRVRRSGQAASSSQF-IDLLDDTRIHPESYGLAQELA 650 + I+Y ++ + Y+NS ++ + P + VK +AL RY+ +PL A L E+ S + P ++FL+P+ IE VD+ N VG+++N A + + L+F+SG G RKA SL R + R+ +T + L K +F+N+ GFL + S + D LD TRIHPE Y LA ++A Sbjct: 843 IPIIYVEDEIAIRYQNSERAAQEFPNKPPYVKYCIALARYMHSPLMEYANLSP--EELKSLSIHPFQSFLSPEYLNRAIETAFVDIVNLVGVEVNKATDNSYYASVLRFVSGFGKRKAIDFLESLQRLNEPLLARQQLITHNILHKVIFMNSAGFLYISWSKKRQRYEDLEHDQLDSTRIHPEDYHLATKVA 1032
BLAST of FC926084 vs. ExPASy Swiss-Prot
Match: SPT6H_DANRE (Transcription elongation factor SPT6 OS=Danio rerio GN=supt6h PE=1 SV=1) HSP 1 Score: 108.612 bits (270), Expect = 2.905e-23 Identity = 60/185 (32.43%), Postives = 103/185 (55.68%), Query Frame = 3 Query: 99 DESLPRLYENSRISSDQLPGQKGNVKRAVALGRYLQNPLAMVATLCGPGREILSWKLCPLENFLTPDEKYGMIEQVMVDVTNQVGLDINLAIHREWQFAPLQFISGLGPRKAASLQRSLVRAGA-IFTRKDFVTAHGLGKKVFVNAVGFLRVRRSGQAASSSQFIDLLDDTRIHPESYGLAQELA 650 D L LY NS+ S +++AV++ R +Q+PL A +C +IL KL PL+ + +E + ++ N+VG+D+N AI + + +Q+I GLGPRK + L + L + + R VT +G KVF+N GF+++ + S+ +I++LD +R+HPE+Y A+++A Sbjct: 877 DNELAVLYMNSKKSEADFRDYPPLLRQAVSVARKIQDPLVEFAQVCSTDDDILCLKLHPLQEHVVKEELLSALYCEFINRVNEVGVDVNRAIAHPYTQSLVQYICGLGPRKGSHLLKILKQNNTRLENRTQLVTMCHMGPKVFINCAGFIKIDTASLGDSTDSYIEVLDGSRVHPETYEWARKMA 1061
BLAST of FC926084 vs. ExPASy Swiss-Prot
Match: SPT6_GIBZE (Transcription elongation factor SPT6 OS=Gibberella zeae GN=SPT6 PE=3 SV=1) HSP 1 Score: 103.219 bits (256), Expect = 1.220e-21 Identity = 68/209 (32.54%), Postives = 109/209 (52.15%), Query Frame = 3 Query: 45 EHPRDVGHEMDELSIVYGDESLPRLYENSRISSDQLPGQKGNVKRAVALGRYLQNPLAMVATLCGPGREILSWKLCPLENFLTPDEKYGMIEQVMVDVTNQVGLDINLAIHREWQFAPLQFISGLGPRKAASLQRSL-VRAGAIFTRKDFVTAHGLGK------KVFVNAVGFLRVRRSGQAASSSQFIDLLDDTRIHPESYGLAQELA 650 E P + + L +V ++ + RLY++S + + P + VAL RY+QNP+ A L G+++ S P +N L D+ ++ MVD+ N G+DIN A++ + L ++SGLGPRKA S+ +++ GA+ TR + V GK +V+ N FL + SS D LD+TR+HPE Y L +++A Sbjct: 799 EDPDTNDYRTEPLEVVVVNDEVARLYKDSPRALAEHPSLNPITRYCVALARYMQNPMKEYAAL---GKDVSSLSYHPCQNLLPADKLAKYLDSAMVDMVNLCGVDINEAMNDTYTANLLPYVSGLGPRKATSVIKAINANGGAVGTRDELVGDPDSGKLPVVGPRVWNNCASFLFIEYEATNPSS----DPLDNTRVHPEDYELGRKMA 1000
BLAST of FC926084 vs. ExPASy Swiss-Prot
Match: SPT6_YEAST (Transcription elongation factor SPT6 OS=Saccharomyces cerevisiae GN=SPT6 PE=1 SV=1) HSP 1 Score: 102.834 bits (255), Expect = 1.594e-21 Identity = 61/192 (31.77%), Postives = 102/192 (53.12%), Query Frame = 3 Query: 81 LSIVYGDESLPRLYENSRISSDQLPGQKGNVKRAVALGRYLQNPLAMVATLCGPGREILSWKLCPLENFLTPDEKYGMIEQVMVDVTNQVGLDINLAIHREWQFAPLQFISGLGPRKAASLQRSLVRAG-AIFTRKDFVTAHGLGKKVFVNAVGFLRVRRSGQAASSSQF-IDLLDDTRIHPESYGLAQELA 650 + I+Y ++ + Y+NS ++ + P + VK +AL RY+ +PL A L E+ S + P +N L+ ++ +E VD+ N V +++N A + + L++ISG G RKA +SL R + R+ +T + L K +F+N+ GFL + + + D LD TRIHPE Y LA ++A Sbjct: 844 IPIIYVEDEVAIRYQNSERAAQEFPNKPPLVKYCIALARYMHSPLLEYANLTS--EEVRSLSIHPHQNLLSSEQLSWALETAFVDIVNLVSVEVNKATDNNYYASALKYISGFGKRKAIDFLQSLQRLNEPLLARQQLITHNILHKTIFMNSAGFLYISWNEKRQKYEDLEHDQLDSTRIHPEDYHLATKVA 1033
BLAST of FC926084 vs. ExPASy Swiss-Prot
Match: SPT6H_CAEBR (Suppressor of Ty 6 homolog OS=Caenorhabditis briggsae GN=emb-5 PE=2 SV=2) HSP 1 Score: 100.908 bits (250), Expect = 6.057e-21 Identity = 63/217 (29.03%), Postives = 109/217 (50.23%), Query Frame = 3 Query: 3 LKDDIYEIIFKMVEEHPRDVGHEMDELSIVYGDESLPRLYENSRISSDQLPGQKGNVKRAVALGRYLQNPLAMVATLCGPGREILSWKLCPLENFLTPDEKYGMIEQVMVDVTNQVGLDINLAIHREWQFAPLQFISGLGPRKAASLQRSL-VRAGAIFTRKDFVTAHGLGKKVFVNAVGFLRVRRSGQAASSSQFIDLLDDTRIHPESYGLAQELA 650 LK D+ E + ++ + ++++ D L ++Y S IS + P +++AV+L R L +P+ A L +I L PL+ + + ++ +V+ N+ G+DIN LQF GLGPRKA SL +S+ I +R V LG KVF+N GF+R+ + + ++++LD +R+HPE+Y A+++A Sbjct: 827 LKRDLEEAVAELYSQ-----SKIFSQINVYLMDNELAKVYMRSNISIAENPDHPPTLRQAVSLARQLLDPIPEYAHLWNSDEDIFCLSLHPLQRDIDQEILAQLLNHELVNRVNEEGVDINKCAEFPHYTNMLQFTCGLGPRKATSLLKSIKANDNLIESRSKLVVGCKLGPKVFMNCAGFIRIDTRRVSDKTDAYVEVLDGSRVHPETYEWARKMA 1038 The following BLAST results are available for this feature:
BLAST of FC926084 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 20
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Sequences
The
following sequences are available for this feature:
EST sequence >FC926084 ID=FC926084; Name=FC926084; organism=Citrus clementina; type=EST; length=655bpback to top |