FC926454

Overview
NameFC926454
Unique NameFC926454
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length516
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC926454 vs. ExPASy Swiss-Prot
Match: RPG1_ARATH (Protein RUPTURED POLLEN GRAIN 1 OS=Arabidopsis thaliana GN=RPG1 PE=2 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 4.795e-29
Identity = 65/177 (36.72%), Postives = 106/177 (59.89%), Query Frame = 1
Query:    1 PAKTFWHIVQRRSTEEFESIPYISKLLNAYFWVWYG--IVKPNSVLVASVNGFGAALEIIYVIIFLIFAPPMMRGRTAVLAGVC-DVVFPGTTVLVTQIFFDRD-VQIKVSGFLSLCFSMVAYSSPLSAMKTVVVTKSVEYMPFLLSFILFINGAVWTVYAVLTK-DLFIXIPNGSG 516
            PAKTFW I +++S EEF  +PY++ ++N   WV+YG  +V  +S+LV+++NG G  +E+ YV ++L++       R  +L  +  +V+     +L+T      D V+    G +   F++  Y +P  A+  VV TKSVEYMPFLLS + F+N  +WT Y+++ K D ++   NG G
Sbjct:   26 PAKTFWRIFKKKSVEEFSYVPYVATVMNCMLWVFYGLPVVHKDSILVSTINGVGLVIELFYVGVYLMYCGHKKNHRRNILGFLALEVILVVAIILITLFALKGDFVKQTFVGVICDVFNIAMYGAPSLAIIKVVKTKSVEYMPFLLSLVCFVNAGIWTTYSLIFKIDYYVLASNGIG 202          
BLAST of FC926454 vs. ExPASy Swiss-Prot
Match: R1AP1_DROPS (RAG1-activating protein 1 homolog OS=Drosophila pseudoobscura pseudoobscura GN=slv PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 8.779e-15
Identity = 46/164 (28.05%), Postives = 81/164 (49.39%), Query Frame = 1
Query:   25 VQRRSTEEFESIPYISKLLNAYFWVWYGIVKPNSVLVASVNGFGAALEIIYVIIFLIFAPPMMRGRTAVLAGVCDVVFPGTTVLVTQIFFDRDVQIKVSGFLSLCFSMVAYSSPLSAMKTVVVTKSVEYMPFLLSFILFINGAVWTVYAVLTKDLFIXIPNGSG 516
            +Q++ST +   +P+I   L+  FW+ YG++     +V  VN  G+ L +IY +I+ +F     R      A V  V+     V   ++   RD  I+++G      ++  +++PL+ +  V+  K+ E +P  L    F+    W +Y +L  D FI IPN  G
Sbjct:   32 IQKKSTGDSSGVPFICGFLSCSFWLRYGVLTEEQSIVL-VNIIGSTLFLIYTLIYYVFTVNK-RAFVRQFAFVLAVLIAVVVVYTNRLADQRDEMIRITGIFCCIVTVCFFAAPLATLLHVIRAKNSESLPLPLIATSFLVSLQWLIYGILISDSFIQIPNFLG 193          
BLAST of FC926454 vs. ExPASy Swiss-Prot
Match: R1AP1_XENLA (RAG1-activating protein 1 homolog OS=Xenopus laevis GN=rag1ap1 PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 7.432e-14
Identity = 45/165 (27.27%), Postives = 87/165 (52.73%), Query Frame = 1
Query:   22 IVQRRSTEEFESIPYISKLLNAYFWVWYGIVKPNSVLVASVNGFGAALEIIYVIIFLIFAPPMMRGRTAVLAGVCDVVFPGTTVLVTQIFFDRDVQIKVSGFLSLCFSMVAYSSPLSAMKTVVVTKSVEYMPFLLSFILFINGAVWTVYAVLTKDLFIXIPNGSG 516
            +V +RS E  + +P+++  LN   W +YG +K +  L+  VN  GA+L+ +Y+  +L+++P      + VL  +  V+  G       I  D + ++   G     F++  Y SPL+ +  ++ +KS + + F L+   F+  + W +Y ++  DL+I +PN  G
Sbjct:   29 MVAQRSVENIQYLPFLTTDLNNLGWFYYGYLKGDGTLMI-VNVIGASLQSLYMGAYLLYSPERRYVGSQVLVSL-GVLLLGYCYFTLWIL-DLNSRLNQLGLFCSVFTISMYLSPLADLAQIIRSKSTKCLSFPLTVATFLTSSSWVLYGLVQSDLYITVPNFPG 190          
BLAST of FC926454 vs. ExPASy Swiss-Prot
Match: R1AP1_MOUSE (RAG1-activating protein 1 OS=Mus musculus GN=Rag1ap1 PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 7.432e-14
Identity = 45/168 (26.79%), Postives = 88/168 (52.38%), Query Frame = 1
Query:   19 HIVQRRSTEEFESIPYISKLLNAYFWVWYGIVKPNSVLVASVNGFGAALEIIYVIIFLIFAPPM--MRGRTAVLAGVCDVVFPGTTVLVTQIFFDRDVQIKVSGFLSLCFSMVAYSSPLSAMKTVVVTKSVEYMPFLLSFILFINGAVWTVYAVLTKDLFIXIPNGSG 516
            H+ + RS +  + +P+++  +N   W+ YG++K +  L+  VN  GA L+ +Y++ +L ++P    +  +TA L  V  + +    +LV     D + +++  G     F++  Y SPL+ +  +V TKS + + F L+       A W++Y    +D +I +PN  G
Sbjct:   32 HMQRTRSVDNIQFLPFLTTDVNNLSWLSYGVLKGDGTLII-VNSVGAVLQTLYILAYLHYSPQKHGVLLQTATLLAVLLLGYGYFWLLVP----DLEARLQQLGLFCSVFTISMYLSPLADLAKIVQTKSTQRLSFSLTIATLFCSASWSIYGFRLRDPYITVPNLPG 194          
BLAST of FC926454 vs. ExPASy Swiss-Prot
Match: R1AP1_DROME (RAG1-activating protein 1 homolog OS=Drosophila melanogaster GN=slv PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 9.706e-14
Identity = 46/165 (27.88%), Postives = 82/165 (49.70%), Query Frame = 1
Query:   25 VQRRSTEEFESIPYISKLLNAYFWVWYGIVKPNSVLVASVNGFGAALEIIYVIIFLIFAPPMMRGRTAVLA-GVCDVVFPGTTVLVTQIFFDRDVQIKVSGFLSLCFSMVAYSSPLSAMKTVVVTKSVEYMPFLLSFILFINGAVWTVYAVLTKDLFIXIPNGSG 516
            +Q++ST +   +P+I   L+  FW+ YG++  N   +  VN  G+ L ++Y +I+ +F    +  R  V   G    V     V   ++   RD  I V+G +    ++  +++PL+++  V+  K+ E +P  L    F+    W +Y +L  D FI IPN  G
Sbjct:   33 IQKKSTGDSSGVPFICGFLSCSFWLRYGVLT-NEQSIVLVNIIGSTLFLVYTLIYYVFT---VNKRACVKQFGFVLTVLVVVIVYTNRLEDQRDRMIHVTGIVCCIVTVCFFAAPLASLLHVIRAKNSESLPLPLIATSFVVSLQWLIYGILISDSFIQIPNFLG 193          
BLAST of FC926454 vs. ExPASy Swiss-Prot
Match: R1AP1_HUMAN (RAG1-activating protein 1 OS=Homo sapiens GN=RAG1AP1 PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.073e-12
Identity = 44/168 (26.19%), Postives = 88/168 (52.38%), Query Frame = 1
Query:   19 HIVQRRSTEEFESIPYISKLLNAYFWVWYGIVKPNSVLVASVNGFGAALEIIYVIIFLIFAPP--MMRGRTAVLAGVCDVVFPGTTVLVTQIFFDRDVQIKVSGFLSLCFSMVAYSSPLSAMKTVVVTKSVEYMPFLLSFILFINGAVWTVYAVLTKDLFIXIPNGSG 516
            H+   RS +  + +P+++  +N   W+ YG +K + +L+  VN  GAAL+ +Y++ +L + P   ++  +TA L GV  + +    +LV     + + +++  G     F++  Y SPL+ +  V+ TKS + + + L+    +  A W +Y    +D +I + N  G
Sbjct:   32 HMRMTRSVDNVQFLPFLTTEVNNLGWLSYGALKGDGILIV-VNTVGAALQTLYILAYLHYCPRKRVVLLQTATLLGVLLLGYGYFWLLVP----NPEARLQQLGLFCSVFTISMYLSPLADLAKVIQTKSTQCLSYPLTIATLLTSASWCLYGFRLRDPYIMVSNFPG 194          
BLAST of FC926454 vs. ExPASy Swiss-Prot
Match: R1AP1_DICDI (RAG1-activating protein 1 homolog OS=Dictyostelium discoideum GN=rag1ap1 PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.402e-12
Identity = 43/171 (25.15%), Postives = 83/171 (48.54%), Query Frame = 1
Query:    1 PAKTFWHIVQRRSTEEFESIPYISKLLNAYFWVWYGIVKPNSVLVASVNGFGAALEIIYVIIFLIFAPPMMRGRTAVLAGVCDVVFPGTTVLVT--QIFFDRDVQIKVSGFLSLCFSMVAYSSPLSAMKTVVVTKSVEYMPFLLSFILFINGAVWTVYAVLTKDLFIXIPN 507
            P KT   I+++++      + +IS +LN + W+ Y ++  N+ ++  VN  G    I YV  +      +   R  +   +   V   T + ++      D D +I   GFLS    ++ ++SPL  M  V+ +K+ E M   ++ +  + G  WT++ +L  D++I +PN
Sbjct:   28 PLKTIRLIIEKKNVGTVAGLQFISSVLNCFLWISYALLTSNTTMLF-VNSIGMMFSIYYVFNYWKNINQVRASRDYLKKVMIACVLAITIISISYYNTVDDLDTRISRLGFLSSVVCVLMFASPLEKMAIVIQSKNSEGMIINVAILSLLCGLSWTIFGLLLNDIYIYLPN 197          
BLAST of FC926454 vs. ExPASy Swiss-Prot
Match: R1AP1_DANRE (RAG1-activating protein 1 homolog OS=Danio rerio GN=rag1ap1 PE=2 SV=2)

HSP 1 Score: 72.4034 bits (176), Expect = 1.402e-12
Identity = 43/161 (26.71%), Postives = 78/161 (48.45%), Query Frame = 1
Query:   34 RSTEEFESIPYISKLLNAYFWVWYGIVKPNSVLVASVNGFGAALEIIYVIIFLIFAPPMMRGRTAVLAGVCDVVFPGTTVLVTQIFFDRDVQIKVSGFLSLCFSMVAYSSPLSAMKTVVVTKSVEYMPFLLSFILFINGAVWTVYAVLTKDLFIXIPNGSG 516
            +S +  + +P+++  LN   W++YG++K +  ++  VN  GA L+ +Y+  +  +     R  T  L  V   V     V  + +    + Q+   G     F++  Y SPL+ +  ++ TKSVE + F L+   F     WT+Y +   D +I +PN  G
Sbjct:   33 QSADNVQFLPFLTTCLNNLGWLYYGLLKGDGTVIF-VNIIGAFLQTVYIATYCHYTKEKRRVYTQTLLMVS--VLCVAWVYFSLVISPGEAQLSQLGLTCSVFTISMYLSPLADLLDIMRTKSVERLSFSLTVATFFTSTSWTLYGLQLGDYYIMVPNTPG 190          
BLAST of FC926454 vs. ExPASy Swiss-Prot
Match: R1AP1_CAEEL (RAG1-activating protein 1 homolog OS=Caenorhabditis elegans GN=K02D7.5 PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 5.326e-12
Identity = 37/157 (23.57%), Postives = 76/157 (48.41%), Query Frame = 1
Query:   46 EFESIPYISKLLNAYFWVWYGIVKPNSVLVASVNGFGAALEIIYVIIFLIFAPPMMRGRTAVLAGVCDVVFPGTTVLVTQIFFDRDVQIKVSGFLSLCFSMVAYSSPLSAMKTVVVTKSVEYMPFLLSFILFINGAVWTVYAVLTKDLFIXIPNGSG 516
            +   +P++  +L   FW+ YG++K + V++  VN  G A    Y + FLI++ P            C ++   +T+    ++      +   G + + F+++ + +PL+ +  V+  + V  +P  +    F+  + W +Y  L  D++I IPNG G
Sbjct:   39 DISGVPFLMGVLGGSFWLRYGLLKMDYVMII-VNVVGVACMAFYCVFFLIYSLPKK-------TFTCQLILVTSTIGGMVLWIALKPNLDYLGVICMTFNIMNFGAPLAGLGVVLKNREVSTLPLPMCVANFLVSSQWCLYGNLVSDIYIIIPNGIG 187          
BLAST of FC926454 vs. ExPASy Swiss-Prot
Match: R1AP1_XENTR (RAG1-activating protein 1 homolog OS=Xenopus tropicalis GN=rag1ap1 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 9.085e-12
Identity = 41/170 (24.12%), Postives = 84/170 (49.41%), Query Frame = 1
Query:   22 IVQRRSTEEFESIPYISKLLNAYFWVWYGIVKPNSVLVASVNGFGAALEIIYVIIFLIFAPPMMRGRTAVLAGVCDVVFPGTTVLVTQIFF-----DRDVQIKVSGFLSLCFSMVAYSSPLSAMKTVVVTKSVEYMPFLLSFILFINGAVWTVYAVLTKDLFIXIPNGSG 516
            +V +RS E  + +P+++  LN   W +YG +K +  L+  VN  GA+L+ +Y+  +++++       + VL  +         + +   +F     D + ++   G     F++  Y SPL+ +  ++ +KS + + F L+   F+    W +Y  +  DL+I +PN  G
Sbjct:   29 MVAKRSVENIQFLPFLTTDLNNLGWFYYGYLKGDGTLII-VNLIGASLQTLYMAAYILYSLERRYVVSQVLVSL-------GVLFLAHCYFTLWTPDINSRLNQLGLFCSIFTISMYLSPLADLAQIIKSKSTKCLSFPLTVATFLTSTSWVLYGWVQSDLYITVPNFPG 190          
The following BLAST results are available for this feature:
BLAST of FC926454 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 12
Match NameE-valueIdentityDescription
RPG1_ARATH4.795e-2936.72Protein RUPTURED POLLEN GRAIN 1 OS=Arabidopsis tha... [more]
R1AP1_DROPS8.779e-1528.05RAG1-activating protein 1 homolog OS=Drosophila ps... [more]
R1AP1_XENLA7.432e-1427.27RAG1-activating protein 1 homolog OS=Xenopus laevi... [more]
R1AP1_MOUSE7.432e-1426.79RAG1-activating protein 1 OS=Mus musculus GN=Rag1a... [more]
R1AP1_DROME9.706e-1427.88RAG1-activating protein 1 homolog OS=Drosophila me... [more]
R1AP1_HUMAN1.073e-1226.19RAG1-activating protein 1 OS=Homo sapiens GN=RAG1A... [more]
R1AP1_DICDI1.402e-1225.15RAG1-activating protein 1 homolog OS=Dictyostelium... [more]
R1AP1_DANRE1.402e-1226.71RAG1-activating protein 1 homolog OS=Danio rerio G... [more]
R1AP1_CAEEL5.326e-1223.57RAG1-activating protein 1 homolog OS=Caenorhabditi... [more]
R1AP1_XENTR9.085e-1224.12RAG1-activating protein 1 homolog OS=Xenopus tropi... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP7YA14FM1 TF Citrus clementina cDNA clone KN0AAP7YA14, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC926454 ID=FC926454; Name=FC926454; organism=Citrus clementina; type=EST; length=516bp
CCTGCGAAAACGTTTTGGCACATAGTACAGCGTAGATCAACGGAGGAATT
TGAGAGCATTCCTTATATAAGCAAATTACTGAATGCATACTTTTGGGTTT
GGTATGGAATTGTGAAGCCCAACAGTGTGCTTGTGGCCTCTGTTAATGGT
TTTGGAGCCGCCCTGGAGATTATTTATGTCATTATATTTCTCATTTTTGC
TCCTCCGATGATGAGGGGTAGAACTGCCGTACTTGCCGGTGTTTGCGATG
TGGTGTTTCCCGGCACAACAGTGTTGGTGACTCAAATATTTTTCGACAGG
GATGTGCAAATCAAGGTCTCAGGTTTCTTGTCTTTGTGTTTCAGCATGGT
CGCCTATAGTTCACCTCTTTCAGCCATGAAAACAGTGGTGGTGACAAAGA
GTGTGGAGTACATGCCCTTTCTTCTCTCATTTATCCTATTCATAAATGGG
GCAGTTTGGACAGTCTATGCTGTGCTCACAAAAGACCTTTTCATTGNAAT
ACCAAATGGGAGTGGA
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