FC926489

Overview
NameFC926489
Unique NameFC926489
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length664
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of FC926489 vs. ExPASy Swiss-Prot
Match: SDE3_ARATH (Probable RNA helicase SDE3 OS=Arabidopsis thaliana GN=SDE3 PE=2 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 3.186e-17
Identity = 62/201 (30.85%), Postives = 107/201 (53.23%), Query Frame = 1 
Query:   85 QGFLYRVVKWTTVLVEFEEDFHSQHQPNHKYDVSFSFNRVCLKRAHEAVADASDSLFRNYLF---HCASR--KSIPYPSLCPYSNYKLDSDSNSAVHQILSFEGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAPWNRTCDKLMECLM----KDIPASEMFRANAAFREADGVSDEIFQVSLVERECF 660
            QGF++RV +   V ++F  +FH +H     Y+V F++NR+  +R ++AV DA++ L  N+LF   H   R  K+ P+  + P     L+++   ++  +L  +G  PY++ GP        KT  +V EA++Q+      +R+L+CAP N   D ++E L+      I  +E+FR NAA R  + +  EI +    +   F
Sbjct:  316 QGFVHRV-EADEVHMKFASEFHQRHTAGSVYNVRFTYNRINTRRLYQAV-DAAEMLDPNFLFPSLHSGKRMIKTKPFVPISP----ALNAEQICSIEMVLGCKGAPPYVIHGPPGT----GKTMTLV-EAIVQLYTTQRNARVLVCAPSNSAADHILEKLLCLEGVRIKDNEIFRLNAATRSYEEIKPEIIRFCFFDELIF 505
The following BLAST results are available for this feature:
BLAST of FC926489 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
SDE3_ARATH3.186e-1730.85Probable RNA helicase SDE3 OS=Arabidopsis thaliana... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAP13YL24FM1 TF Citrus clementina cDNA clone KN0AAP13YL24, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC926489 ID=FC926489; Name=FC926489; organism=Citrus clementina; type=EST; length=664bp
TCGTCATTCAATCTTTTTGTTTGTTGTTTATTGTTTGTTCATATTTCCAT
CTTTTCCAGAATATTTATGTTCGCAAATCCTGACCAGGGTTTCCTTTATC
GAGTGGTTAAGTGGACTACTGTTTTAGTTGAATTTGAAGAAGATTTTCAT
TCTCAGCATCAACCCAACCACAAATATGATGTTAGCTTCTCATTCAACAG
AGTCTGTTTGAAACGGGCTCACGAAGCAGTTGCAGATGCATCAGATTCTT
TATTCAGGAACTACCTTTTTCATTGTGCCTCCAGAAAGAGCATCCCTTAC
CCATCACTTTGTCCTTATAGCAATTATAAACTTGATTCGGATAGCAATTC
TGCAGTGCATCAGATATTAAGCTTTGAGGGCCAGTCACCTTATCTTCTAG
AGGGTCCACTCTGTAATAATTTTGTACTTTCAAAAACTGGAAATGTTGTT
CGAGAAGCAGTGCTCCAAATTCGTCGGCGCTCGCCTAAGAGTCGAATTCT
TATATGTGCTCCTTGGAACAGAACTTGTGATAAGCTAATGGAATGTTTGA
TGAAGGATATTCCGGCATCAGAAATGTTTCGAGCCAATGCTGCATTCAGA
GAAGCGGATGGGGTATCAGATGAAATCTTTCAGGTATCACTTGTTGAACG
GGAGTGTTTTTCTT
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