FC926670

Overview
NameFC926670
Unique NameFC926670
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length656
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC926670 vs. ExPASy Swiss-Prot
Match: PDC1_ORYSJ (Pyruvate decarboxylase isozyme 1 OS=Oryza sativa subsp. japonica GN=PDC1 PE=2 SV=1)

HSP 1 Score: 304.294 bits (778), Expect = 3.642e-82
Identity = 149/186 (80.11%), Postives = 168/186 (90.32%), Query Frame = 2
Query:   98 KPPCSDLASPPNGAVSTIQSSVPATPLVNPSESTLGRHLARRLVQIGATDVFSVPGDFNLTLLDHLIAEPGLNLIGCCNELNAGYAADGYARSRGVGACVVTFTVGGLSVLNAIAGAYSENLPLICIVGGPNSNDYGTNRILHHTIGLPDFSQELRCFQTVTCYQAVVNNLEDAHDLIDTAVSTAL 655
            KP C+ + S P   VS+  ++V   P+ + + +TLGRHLARRLVQIGATDVF+VPGDFNLTLLD+LIAEPGL LIGCCNELNAGYAADGYAR+RGVGAC VTFTVGGLSVLNAIAGAYSENLP+ICIVGGPNSNDYGTNRILHHTIGLPDFSQELRCFQT+TCYQAV+NNL+DAH+ IDTA++TAL
Sbjct:   15 KPSCNSVGSLP--VVSS--NAVINPPVTSAAGATLGRHLARRLVQIGATDVFAVPGDFNLTLLDYLIAEPGLKLIGCCNELNAGYAADGYARARGVGACAVTFTVGGLSVLNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFSQELRCFQTITCYQAVINNLDDAHEQIDTAIATAL 196          
BLAST of FC926670 vs. ExPASy Swiss-Prot
Match: PDC1_ORYSI (Pyruvate decarboxylase isozyme 1 OS=Oryza sativa subsp. indica GN=PDC1 PE=2 SV=1)

HSP 1 Score: 304.294 bits (778), Expect = 3.642e-82
Identity = 149/186 (80.11%), Postives = 168/186 (90.32%), Query Frame = 2
Query:   98 KPPCSDLASPPNGAVSTIQSSVPATPLVNPSESTLGRHLARRLVQIGATDVFSVPGDFNLTLLDHLIAEPGLNLIGCCNELNAGYAADGYARSRGVGACVVTFTVGGLSVLNAIAGAYSENLPLICIVGGPNSNDYGTNRILHHTIGLPDFSQELRCFQTVTCYQAVVNNLEDAHDLIDTAVSTAL 655
            KP C+ + S P   VS+  ++V   P+ + + +TLGRHLARRLVQIGATDVF+VPGDFNLTLLD+LIAEPGL LIGCCNELNAGYAADGYAR+RGVGAC VTFTVGGLSVLNAIAGAYSENLP+ICIVGGPNSNDYGTNRILHHTIGLPDFSQELRCFQT+TCYQAV+NNL+DAH+ IDTA++TAL
Sbjct:   15 KPSCNSVGSLP--VVSS--NAVIHPPVTSAAGATLGRHLARRLVQIGATDVFAVPGDFNLTLLDYLIAEPGLKLIGCCNELNAGYAADGYARARGVGACAVTFTVGGLSVLNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFSQELRCFQTITCYQAVINNLDDAHEQIDTAIATAL 196          
BLAST of FC926670 vs. ExPASy Swiss-Prot
Match: PDC1_MAIZE (Pyruvate decarboxylase isozyme 1 OS=Zea mays GN=PDC1 PE=2 SV=1)

HSP 1 Score: 303.138 bits (775), Expect = 8.112e-82
Identity = 145/187 (77.54%), Postives = 166/187 (88.77%), Query Frame = 2
Query:   98 KPPCSDL-ASPPNGAVSTIQSSVPATPLVNPSESTLGRHLARRLVQIGATDVFSVPGDFNLTLLDHLIAEPGLNLIGCCNELNAGYAADGYARSRGVGACVVTFTVGGLSVLNAIAGAYSENLPLICIVGGPNSNDYGTNRILHHTIGLPDFSQELRCFQTVTCYQAVVNNLEDAHDLIDTAVSTAL 655
            KP C+ + A P   + + I +   A   + P+ +TLGRHLARRLVQIGA+DVF+VPGDFNLTLLD+LIAEPGL L+GCCNELNAGYAADGYARSRGVGAC VTFTVGGLSVLNAIAGAYSENLP++CIVGGPNSNDYGTNRILHHTIGLPDFSQELRCFQT+TCYQA++NNL+DAH+ IDTA++TAL
Sbjct:   15 KPTCNGVGALPVANSHAIIATPAAAAATLAPAGATLGRHLARRLVQIGASDVFAVPGDFNLTLLDYLIAEPGLTLVGCCNELNAGYAADGYARSRGVGACAVTFTVGGLSVLNAIAGAYSENLPVVCIVGGPNSNDYGTNRILHHTIGLPDFSQELRCFQTITCYQAIINNLDDAHEQIDTAIATAL 201          
BLAST of FC926670 vs. ExPASy Swiss-Prot
Match: PDC2_ORYSJ (Pyruvate decarboxylase isozyme 2 OS=Oryza sativa subsp. japonica GN=PDC2 PE=2 SV=1)

HSP 1 Score: 300.827 bits (769), Expect = 4.026e-81
Identity = 153/203 (75.37%), Postives = 170/203 (83.74%), Query Frame = 2
Query:   65 MDTKIGSLDTCKPPCSDLASPPNGAVSTIQSSV--PATPL----VNPSESTLGRHLARRLVQIGATDVFSVPGDFNLTLLDHLIAEPGLNLIGCCNELNAGYAADGYARSRGVGACVVTFTVGGLSVLNAIAGAYSENLPLICIVGGPNSNDYGTNRILHHTIGLPDFSQELRCFQTVTCYQAVVNNLEDAHDLIDTAVSTAL 655
            M+T IGS+D         A+  NGAV    S+V  P T      V+  E++LGRHLARRLVQ+G +DVF+VPGDFNLTLLDHLIAEPGL L+GCCNELNAGYAADGYAR+RGVGAC VTFTVGGLSVLNAIAGAYSENLP+ICI GGPNSNDYGTNRILHHTIGLPDFSQELRCFQTVTC+QAVV NLEDAH+ IDTA++TAL
Sbjct:    1 METHIGSVDGAA------AAADNGAVGCPASAVGCPMTSARPAPVSAGEASLGRHLARRLVQVGVSDVFAVPGDFNLTLLDHLIAEPGLRLVGCCNELNAGYAADGYARARGVGACAVTFTVGGLSVLNAIAGAYSENLPVICIAGGPNSNDYGTNRILHHTIGLPDFSQELRCFQTVTCHQAVVTNLEDAHEQIDTAIATAL 197          
BLAST of FC926670 vs. ExPASy Swiss-Prot
Match: PDC2_ORYSI (Pyruvate decarboxylase isozyme 2 OS=Oryza sativa subsp. indica GN=PDC2 PE=2 SV=2)

HSP 1 Score: 300.827 bits (769), Expect = 4.026e-81
Identity = 153/203 (75.37%), Postives = 170/203 (83.74%), Query Frame = 2
Query:   65 MDTKIGSLDTCKPPCSDLASPPNGAVSTIQSSV--PATPL----VNPSESTLGRHLARRLVQIGATDVFSVPGDFNLTLLDHLIAEPGLNLIGCCNELNAGYAADGYARSRGVGACVVTFTVGGLSVLNAIAGAYSENLPLICIVGGPNSNDYGTNRILHHTIGLPDFSQELRCFQTVTCYQAVVNNLEDAHDLIDTAVSTAL 655
            M+T IGS+D         A+  NGAV    S+V  P T      V+  E++LGRHLARRLVQ+G +DVF+VPGDFNLTLLDHLIAEPGL L+GCCNELNAGYAADGYAR+RGVGAC VTFTVGGLSVLNAIAGAYSENLP+ICI GGPNSNDYGTNRILHHTIGLPDFSQELRCFQTVTC+QAVV NLEDAH+ IDTA++TAL
Sbjct:    1 METHIGSVDGAA------AAADNGAVGCPASAVGCPMTSARPAPVSAGEASLGRHLARRLVQVGVSDVFAVPGDFNLTLLDHLIAEPGLRLVGCCNELNAGYAADGYARARGVGACAVTFTVGGLSVLNAIAGAYSENLPVICIAGGPNSNDYGTNRILHHTIGLPDFSQELRCFQTVTCHQAVVTNLEDAHEQIDTAIATAL 197          
BLAST of FC926670 vs. ExPASy Swiss-Prot
Match: PDC1_PEA (Pyruvate decarboxylase isozyme 1 OS=Pisum sativum GN=PDC1 PE=2 SV=1)

HSP 1 Score: 298.901 bits (764), Expect = 1.530e-80
Identity = 144/177 (81.36%), Postives = 160/177 (90.40%), Query Frame = 2
Query:  128 PNGAVSTIQSSVPATPLVNPS-ESTLGRHLARRLVQIGATDVFSVPGDFNLTLLDHLIAEPGLNLIGCCNELNAGYAADGYARSRGVGACVVTFTVGGLSVLNAIAGAYSENLPLICIVGGPNSNDYGTNRILHHTIGLPDFSQELRCFQTVTCYQAVVNNLEDAHDLIDTAVSTAL 655
            PNG+     S+  A PL   S + T+GRHLARRLV+IG  DVFSVPGDFNLTLLDHLIAEP LNL+GCCNELNAGYAADGY R++GVGACVVTFTVGGLS+LNAIAGAYSENLP+ICIVGGPNSNDYGTNRILHHTIGLPDFSQEL+CFQT+TC+QAVVNNL+DAH+LIDTA+STAL
Sbjct:    8 PNGSTPCPTSAPSAIPLRPSSCDGTMGRHLARRLVEIGVRDVFSVPGDFNLTLLDHLIAEPELNLVGCCNELNAGYAADGYGRAKGVGACVVTFTVGGLSILNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFSQELQCFQTITCFQAVVNNLDDAHELIDTAISTAL 184          
BLAST of FC926670 vs. ExPASy Swiss-Prot
Match: PDC2_TOBAC (Pyruvate decarboxylase isozyme 2 OS=Nicotiana tabacum GN=PDC2 PE=2 SV=1)

HSP 1 Score: 293.508 bits (750), Expect = 6.428e-79
Identity = 144/171 (84.21%), Postives = 157/171 (91.81%), Query Frame = 2
Query:  143 STIQSSVPATPLVNPSESTLGRHLARRLVQIGATDVFSVPGDFNLTLLDHLIAEPGLNLIGCCNELNAGYAADGYARSRGVGACVVTFTVGGLSVLNAIAGAYSENLPLICIVGGPNSNDYGTNRILHHTIGLPDFSQELRCFQTVTCYQAVVNNLEDAHDLIDTAVSTAL 655
            S IQ S  ++ + N +++TLGRHLARRLV+IG  DVFSVPGDFNLTLLDHLIAEP L  IGCCNELNAGYAADGYAR+RGVGACVVTFTVGGLSVLNAIAGAYSENLP+ICIVGGPN+NDYGTNRILHHTIGLPDFSQELRCFQTVTCYQAVVNNL+DAH+ ID A+STAL
Sbjct:   10 SCIQDSQSSSVIAN-TDATLGRHLARRLVEIGIQDVFSVPGDFNLTLLDHLIAEPRLKNIGCCNELNAGYAADGYARARGVGACVVTFTVGGLSVLNAIAGAYSENLPVICIVGGPNTNDYGTNRILHHTIGLPDFSQELRCFQTVTCYQAVVNNLDDAHEQIDRAISTAL 179          
BLAST of FC926670 vs. ExPASy Swiss-Prot
Match: PDC3_ORYSJ (Pyruvate decarboxylase isozyme 3 OS=Oryza sativa subsp. japonica GN=PDC3 PE=2 SV=1)

HSP 1 Score: 288.886 bits (738), Expect = 1.583e-77
Identity = 136/163 (83.44%), Postives = 150/163 (92.02%), Query Frame = 2
Query:  167 ATPLVNPSESTLGRHLARRLVQIGATDVFSVPGDFNLTLLDHLIAEPGLNLIGCCNELNAGYAADGYARSRGVGACVVTFTVGGLSVLNAIAGAYSENLPLICIVGGPNSNDYGTNRILHHTIGLPDFSQELRCFQTVTCYQAVVNNLEDAHDLIDTAVSTAL 655
            A  + +  ++TLG HLARRLVQ+G +DVF+VPGDFNLTLLDHLIAEPGL ++GCCNELNAGYAADGYAR+RGVGAC VTFTVGGLSVLNAI GAYSENLPLICIVGGPNSNDYGTNRILHHTIGLPDFSQELRCFQ +TCYQAVVNNL+DAHD ID A+STA+
Sbjct:   15 AVVVPSSGDATLGGHLARRLVQVGVSDVFAVPGDFNLTLLDHLIAEPGLRVVGCCNELNAGYAADGYARARGVGACAVTFTVGGLSVLNAIGGAYSENLPLICIVGGPNSNDYGTNRILHHTIGLPDFSQELRCFQPLTCYQAVVNNLDDAHDQIDRAISTAI 177          
BLAST of FC926670 vs. ExPASy Swiss-Prot
Match: PDC3_ORYSI (Pyruvate decarboxylase isozyme 3 OS=Oryza sativa subsp. indica GN=PDC3 PE=2 SV=2)

HSP 1 Score: 288.886 bits (738), Expect = 1.583e-77
Identity = 136/163 (83.44%), Postives = 150/163 (92.02%), Query Frame = 2
Query:  167 ATPLVNPSESTLGRHLARRLVQIGATDVFSVPGDFNLTLLDHLIAEPGLNLIGCCNELNAGYAADGYARSRGVGACVVTFTVGGLSVLNAIAGAYSENLPLICIVGGPNSNDYGTNRILHHTIGLPDFSQELRCFQTVTCYQAVVNNLEDAHDLIDTAVSTAL 655
            A  + +  ++TLG HLARRLVQ+G +DVF+VPGDFNLTLLDHLIAEPGL ++GCCNELNAGYAADGYAR+RGVGAC VTFTVGGLSVLNAI GAYSENLPLICIVGGPNSNDYGTNRILHHTIGLPDFSQELRCFQ +TCYQAVVNNL+DAHD ID A+STA+
Sbjct:   15 AVVVPSSGDATLGGHLARRLVQVGVSDVFAVPGDFNLTLLDHLIAEPGLRVVGCCNELNAGYAADGYARARGVGACAVTFTVGGLSVLNAIGGAYSENLPLICIVGGPNSNDYGTNRILHHTIGLPDFSQELRCFQPLTCYQAVVNNLDDAHDQIDRAISTAI 177          
BLAST of FC926670 vs. ExPASy Swiss-Prot
Match: PDC1_TOBAC (Pyruvate decarboxylase isozyme 1 (Fragment) OS=Nicotiana tabacum GN=PDC1 PE=2 SV=1)

HSP 1 Score: 197.593 bits (501), Expect = 4.800e-50
Identity = 96/101 (95.05%), Postives = 99/101 (98.02%), Query Frame = 2
Query:  353 AADGYARSRGVGACVVTFTVGGLSVLNAIAGAYSENLPLICIVGGPNSNDYGTNRILHHTIGLPDFSQELRCFQTVTCYQAVVNNLEDAHDLIDTAVSTAL 655
            AADGYAR+RGVGACVVTFTVGGLSVLNAIAGAYSENLPLICIVGGPNSNDYGTNRILHHTIGL DFSQE RCFQTVTCY+AVVNNLEDAH+LIDTAVSTAL
Sbjct:    1 AADGYARARGVGACVVTFTVGGLSVLNAIAGAYSENLPLICIVGGPNSNDYGTNRILHHTIGLQDFSQEPRCFQTVTCYRAVVNNLEDAHELIDTAVSTAL 101          
The following BLAST results are available for this feature:
BLAST of FC926670 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 41
Match NameE-valueIdentityDescription
PDC1_ORYSJ3.642e-8280.11Pyruvate decarboxylase isozyme 1 OS=Oryza sativa s... [more]
PDC1_ORYSI3.642e-8280.11Pyruvate decarboxylase isozyme 1 OS=Oryza sativa s... [more]
PDC1_MAIZE8.112e-8277.54Pyruvate decarboxylase isozyme 1 OS=Zea mays GN=PD... [more]
PDC2_ORYSJ4.026e-8175.37Pyruvate decarboxylase isozyme 2 OS=Oryza sativa s... [more]
PDC2_ORYSI4.026e-8175.37Pyruvate decarboxylase isozyme 2 OS=Oryza sativa s... [more]
PDC1_PEA1.530e-8081.36Pyruvate decarboxylase isozyme 1 OS=Pisum sativum ... [more]
PDC2_TOBAC6.428e-7984.21Pyruvate decarboxylase isozyme 2 OS=Nicotiana taba... [more]
PDC3_ORYSJ1.583e-7783.44Pyruvate decarboxylase isozyme 3 OS=Oryza sativa s... [more]
PDC3_ORYSI1.583e-7783.44Pyruvate decarboxylase isozyme 3 OS=Oryza sativa s... [more]
PDC1_TOBAC4.800e-5095.05Pyruvate decarboxylase isozyme 1 (Fragment) OS=Nic... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP13YO21FM1 TF Citrus clementina cDNA clone KN0AAP13YO21, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC926670 ID=FC926670; Name=FC926670; organism=Citrus clementina; type=EST; length=656bp
AAGACACTTTTCGGAAACACATTAACAAACGGACAATTCTTCGTCTCCGG
CCCTTCAATCAATCATGGACACTAAAATTGGATCACTCGACACCTGCAAG
CCCCCATGCAGCGACTTAGCCAGCCCGCCAAACGGTGCCGTTTCAACAAT
CCAATCCTCCGTTCCCGCTACTCCACTCGTCAACCCGTCCGAGTCGACCC
TCGGCCGCCACCTCGCTCGCCGGCTCGTCCAAATCGGCGCCACCGACGTC
TTCTCGGTCCCCGGCGACTTCAACTTGACGCTTCTCGACCACCTGATAGC
CGAGCCCGGGCTCAACTTGATCGGTTGCTGTAACGAGCTGAATGCCGGAT
ACGCTGCCGATGGGTACGCTCGCTCGCGTGGGGTCGGCGCCTGTGTCGTG
ACCTTCACCGTTGGTGGGCTTAGCGTGCTTAACGCTATCGCCGGTGCTTA
CAGTGAAAATCTGCCGTTGATTTGCATCGTTGGTGGCCCAAACTCCAATG
ATTACGGAACCAACAGGATCCTTCATCATACCATTGGCTTGCCTGATTTT
AGCCAAGAACTCAGATGCTTTCAGACTGTCACCTGTTATCAGGCTGTGGT
GAATAACTTGGAGGATGCACATGATTTGATTGATACGGCAGTATCAACTG
CTTTGA
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