FC927064

Overview
NameFC927064
Unique NameFC927064
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length690
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of FC927064 vs. ExPASy Swiss-Prot
Match: PP314_ARATH (Pentatricopeptide repeat-containing protein At4g16390, chloroplastic OS=Arabidopsis thaliana GN=P67 PE=1 SV=2)

HSP 1 Score: 165.622 bits (418), Expect = 2.222e-40
Identity = 84/162 (51.85%), Postives = 111/162 (68.52%), Query Frame = 1 
Query:  205 FYSKTSLQKRSVSLQETQSSNPTKHSQNPQYPHGKTGSSPKSYIWVNPKSPRASKLKEKSYDTRYNSLVKLAADLDSCSATEDDVFSVLRCLGDDFLEQDCVIILNNMTNPDTAALALTYFTNKLKASKEVILYNVTMKVFRKCRDLDKAERLFDDLLDRGV 690
            F+S+  LQ   VS+QE    +      +   P  +  +S KSY+WVNPKSPRAS+L+ KSYD+RY+SL+KLA  LD+C   E DV  V+   G    EQD V+ LNNMTNP+TA L L      +K S+EVILYNVTMKVFRK +DL+K+E+LFD++L+RG+
Sbjct:   32 FHSRNLLQATHVSVQEAIPQSEKSKLVDVDLPIPEPTAS-KSYVWVNPKSPRASQLRRKSYDSRYSSLIKLAESLDACKPNEADVCDVITGFGGKLFEQDAVVTLNNMTNPETAPLVLNNLLETMKPSREVILYNVTMKVFRKSKDLEKSEKLFDEMLERGI 192
The following BLAST results are available for this feature:
BLAST of FC927064 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
PP314_ARATH2.222e-4051.85Pentatricopeptide repeat-containing protein At4g16... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAP2YJ11FM1 TF Citrus clementina cDNA clone KN0AAP2YJ11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC927064 ID=FC927064; Name=FC927064; organism=Citrus clementina; type=EST; length=690bp
CGAGAGAGAGACAGAGAGACGCAGAGACTCTTCTACTGCAGTTTATCGCG
TGGGTGCGTGCGTGTAATATAACATAACTCAGCCTGAGGTGAGTGTTGAA
CAATGGCTTCCAATCTCTGCTACTCAACGTGTTCTCTCTTTTCAACACCA
AAGCTTGGAAGAAGAACCTTCACTTTCTCTTTTCAACGCGACGACTCCCT
CTCATTTTACTCCAAAACCTCTCTCCAAAAACGCAGCGTTTCGTTGCAAG
AAACCCAGAGCTCAAACCCTACAAAGCATTCGCAAAATCCTCAATACCCG
CACGGAAAAACTGGTTCTTCTCCTAAAAGCTACATCTGGGTCAATCCCAA
AAGTCCAAGAGCTTCCAAGTTGAAGGAAAAATCTTATGATACGAGGTACA
ATTCTCTTGTTAAACTTGCCGCAGATTTGGATTCTTGTAGTGCGACTGAA
GATGATGTTTTTAGTGTTTTGCGTTGCTTGGGTGATGATTTCTTAGAGCA
AGATTGTGTCATTATTCTTAATAACATGACCAACCCAGATACTGCAGCGC
TTGCTTTGACATATTTTACAAATAAATTGAAAGCTAGTAAAGAAGTGATT
CTTTACAACGTGACTATGAAAGTGTTTAGAAAGTGTAGAGATTTGGATAA
AGCCGAGAGGTTGTTTGATGACTTGCTTGACCGAGGTGTT
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