FC928822

Overview
NameFC928822
Unique NameFC928822
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length711
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15005 contig Ccv1_Contig15005:1..711. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC928822 vs. ExPASy Swiss-Prot
Match: U2AFA_ARATH (Splicing factor U2af small subunit A OS=Arabidopsis thaliana GN=U2AF35A PE=1 SV=1)

HSP 1 Score: 188.734 bits (478), Expect = 2.577e-47
Identity = 90/116 (77.59%), Postives = 95/116 (81.90%), Query Frame = 3
Query:  363 MVEHLASIFGTEKDRVNCPFYFKIGACRLGDRCSRLHTKPSVSPTLLL*NMYQRLDMITPGVDAQGNPLDPRKIQXXXXXXXXXXXXXXNKYGEIESLNICDNLADHMVGNVYVQF 710
            M EHLASIFGTEKDRVNCPFYFKIGACR GDRCSRLH +P++SPTLLL NMYQR DMITPGVDAQG PLDPRKIQ               K+GEIESLNICDNLADHM+GNVYVQF
Sbjct:    1 MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITPGVDAQGQPLDPRKIQEHFEDFFEDLFEELGKFGEIESLNICDNLADHMIGNVYVQF 116          
BLAST of FC928822 vs. ExPASy Swiss-Prot
Match: U2AFA_ORYSJ (Splicing factor U2af small subunit A OS=Oryza sativa subsp. japonica GN=U2AF35A PE=2 SV=1)

HSP 1 Score: 186.037 bits (471), Expect = 1.670e-46
Identity = 88/116 (75.86%), Postives = 94/116 (81.03%), Query Frame = 3
Query:  363 MVEHLASIFGTEKDRVNCPFYFKIGACRLGDRCSRLHTKPSVSPTLLL*NMYQRLDMITPGVDAQGNPLDPRKIQXXXXXXXXXXXXXXNKYGEIESLNICDNLADHMVGNVYVQF 710
            M EHLASIFGTEKDRVNCPFYFKIGACR GDRCSRLH KPSVSPTLLL NMY R DMITPG+DAQGNP+DP KIQ              +KYGEIESL++CDN ADHM+GNVYVQF
Sbjct:    1 MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNKPSVSPTLLLSNMYLRPDMITPGIDAQGNPIDPEKIQADFEDFYEDIFEELSKYGEIESLHVCDNFADHMIGNVYVQF 116          
BLAST of FC928822 vs. ExPASy Swiss-Prot
Match: U2AFB_ARATH (Splicing factor U2af small subunit B OS=Arabidopsis thaliana GN=U2AF35B PE=2 SV=1)

HSP 1 Score: 183.341 bits (464), Expect = 1.083e-45
Identity = 86/116 (74.14%), Postives = 93/116 (80.17%), Query Frame = 3
Query:  363 MVEHLASIFGTEKDRVNCPFYFKIGACRLGDRCSRLHTKPSVSPTLLL*NMYQRLDMITPGVDAQGNPLDPRKIQXXXXXXXXXXXXXXNKYGEIESLNICDNLADHMVGNVYVQF 710
            M EHLASIFGTEKDRVNCPFYFKIGACR GDRCSRLH +P++SPTLLL NMYQR DMITPGVD QG PLDP KIQ              NK+GE+ESLN+CDNLADHM+GNVYV F
Sbjct:    1 MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITPGVDPQGQPLDPSKIQDHFEDFYEDIFEELNKFGEVESLNVCDNLADHMIGNVYVLF 116          
BLAST of FC928822 vs. ExPASy Swiss-Prot
Match: U2AFB_ORYSJ (Splicing factor U2af small subunit B OS=Oryza sativa subsp. japonica GN=U2AF35B PE=2 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 3.150e-45
Identity = 83/116 (71.55%), Postives = 95/116 (81.90%), Query Frame = 3
Query:  363 MVEHLASIFGTEKDRVNCPFYFKIGACRLGDRCSRLHTKPSVSPTLLL*NMYQRLDMITPGVDAQGNPLDPRKIQXXXXXXXXXXXXXXNKYGEIESLNICDNLADHMVGNVYVQF 710
            M EHLASIFGTEKDRVNCPFYFKIGACR GDRCSRLH +P+VSPT++L NMYQR DMITPGVDAQG P+DP K+Q              +K+GE+E+LN+CDNLADHM+GNVYVQF
Sbjct:    1 MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTVSPTIVLANMYQRPDMITPGVDAQGQPIDPEKMQEHFEDFYEDIYEELSKFGEVETLNVCDNLADHMIGNVYVQF 116          
BLAST of FC928822 vs. ExPASy Swiss-Prot
Match: U2AF1_DROME (Splicing factor U2af 38 kDa subunit OS=Drosophila melanogaster GN=U2af38 PE=1 SV=2)

HSP 1 Score: 124.405 bits (311), Expect = 5.968e-28
Identity = 62/119 (52.10%), Postives = 75/119 (63.03%), Query Frame = 3
Query:  363 MVEHLASIFGTEKDRVNCPFYFKIGACRLGDRCSRLHTKPSVSPTLLL*NMY---QRLDMITPGVDAQGNPLDPRKIQXXXXXXXXXXXXXXNKYGEIESLNICDNLADHMVGNVYVQF 710
            M E+LASIFGTEKD+VNC FYFKIGACR GDRCSR+H KP+ S T+LL N+Y   Q       G     N  D    +              +KYGEIE +N+CDNL DH+VGNVY++F
Sbjct:    1 MAEYLASIFGTEKDKVNCSFYFKIGACRHGDRCSRIHNKPTFSQTVLLQNLYVNPQNSAKSADGSHLVANVSDEEMQEHYDNFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKF 119          
BLAST of FC928822 vs. ExPASy Swiss-Prot
Match: U2AF4_RAT (Splicing factor U2AF 26 kDa subunit OS=Rattus norvegicus GN=U2af1l4 PE=2 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.329e-27
Identity = 61/117 (52.14%), Postives = 75/117 (64.10%), Query Frame = 3
Query:  363 MVEHLASIFGTEKDRVNCPFYFKIGACRLGDRCSRLHTKPSVSPTLLL*NMYQRLDMITPGVDAQGNPLDPRKIQ-XXXXXXXXXXXXXXNKYGEIESLNICDNLADHMVGNVYVQF 710
            M E+LASIFGTEKD+VNC FYFKIGACR GDRCSRLH KP+ S T++L N+Y+         D     +   ++Q                KYGEIE +N+CDNL DH+VGNVYV+F
Sbjct:    1 MAEYLASIFGTEKDKVNCSFYFKIGACRHGDRCSRLHNKPTFSQTIVLLNLYRNPQNTAQTADGSHCHVSDVEVQEHYDNFFEEVFTELQEKYGEIEEMNVCDNLGDHLVGNVYVKF 117          
BLAST of FC928822 vs. ExPASy Swiss-Prot
Match: U2AF4_MOUSE (Splicing factor U2AF 26 kDa subunit OS=Mus musculus GN=U2af1l4 PE=1 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.329e-27
Identity = 61/117 (52.14%), Postives = 75/117 (64.10%), Query Frame = 3
Query:  363 MVEHLASIFGTEKDRVNCPFYFKIGACRLGDRCSRLHTKPSVSPTLLL*NMYQRLDMITPGVDAQGNPLDPRKIQ-XXXXXXXXXXXXXXNKYGEIESLNICDNLADHMVGNVYVQF 710
            M E+LASIFGTEKD+VNC FYFKIGACR GDRCSRLH KP+ S T++L N+Y+         D     +   ++Q                KYGEIE +N+CDNL DH+VGNVYV+F
Sbjct:    1 MAEYLASIFGTEKDKVNCSFYFKIGACRHGDRCSRLHNKPTFSQTIVLLNLYRNPQNTAQTADGSHCHVSDVEVQEHYDNFFEEVFTELQEKYGEIEEMNVCDNLGDHLVGNVYVKF 117          
BLAST of FC928822 vs. ExPASy Swiss-Prot
Match: U2AF4_BOVIN (Splicing factor U2AF 26 kDa subunit OS=Bos taurus GN=U2AF1L4 PE=2 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.329e-27
Identity = 61/117 (52.14%), Postives = 75/117 (64.10%), Query Frame = 3
Query:  363 MVEHLASIFGTEKDRVNCPFYFKIGACRLGDRCSRLHTKPSVSPTLLL*NMYQRLDMITPGVDAQGNPLDPRKIQ-XXXXXXXXXXXXXXNKYGEIESLNICDNLADHMVGNVYVQF 710
            M E+LASIFGTEKD+VNC FYFKIGACR GDRCSRLH KP+ S T++L N+Y+         D     +   ++Q                KYGEIE +N+CDNL DH+VGNVYV+F
Sbjct:    1 MAEYLASIFGTEKDKVNCSFYFKIGACRHGDRCSRLHNKPTFSQTIVLLNLYRNPQNTAQTADGSHCHVSDVEVQEHYDNFFEEVFTELQEKYGEIEEMNVCDNLGDHLVGNVYVKF 117          
BLAST of FC928822 vs. ExPASy Swiss-Prot
Match: U2AF4_HUMAN (Splicing factor U2AF 26 kDa subunit OS=Homo sapiens GN=U2AF1L4 PE=1 SV=2)

HSP 1 Score: 121.709 bits (304), Expect = 3.868e-27
Identity = 60/117 (51.28%), Postives = 74/117 (63.25%), Query Frame = 3
Query:  363 MVEHLASIFGTEKDRVNCPFYFKIGACRLGDRCSRLHTKPSVSPTLLL*NMYQRLDMITPGVDAQGNPLDPRKIQ-XXXXXXXXXXXXXXNKYGEIESLNICDNLADHMVGNVYVQF 710
            M E+LASIFGTEKD+VNC FYFKIG CR GDRCSRLH KP+ S T++L N+Y+         D     +   ++Q                KYGEIE +N+CDNL DH+VGNVYV+F
Sbjct:    1 MAEYLASIFGTEKDKVNCSFYFKIGVCRHGDRCSRLHNKPTFSQTIVLLNLYRNPQNTAQTADGSHCHVSDVEVQEHYDSFFEEVFTELQEKYGEIEEMNVCDNLGDHLVGNVYVKF 117          
BLAST of FC928822 vs. ExPASy Swiss-Prot
Match: U2AF1_MOUSE (Splicing factor U2AF 35 kDa subunit OS=Mus musculus GN=U2af1 PE=2 SV=4)

HSP 1 Score: 121.324 bits (303), Expect = 5.052e-27
Identity = 60/117 (51.28%), Postives = 75/117 (64.10%), Query Frame = 3
Query:  363 MVEHLASIFGTEKDRVNCPFYFKIGACRLGDRCSRLHTKPSVSPTLLL*NMYQRLDMITPGVDAQGNPLDPRKIQ-XXXXXXXXXXXXXXNKYGEIESLNICDNLADHMVGNVYVQF 710
            M E+LASIFGTEKD+VNC FYFKIGACR GDRCSRLH KP+ S T+ L N+Y+     +   D     +   ++Q                KYGE+E +N+CDNL DH+VGNVYV+F
Sbjct:    1 MAEYLASIFGTEKDKVNCSFYFKIGACRHGDRCSRLHNKPTFSQTIALLNIYRNPQNSSQSADGLRCAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKF 117          
The following BLAST results are available for this feature:
BLAST of FC928822 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 19
Match NameE-valueIdentityDescription
U2AFA_ARATH2.577e-4777.59Splicing factor U2af small subunit A OS=Arabidopsi... [more]
U2AFA_ORYSJ1.670e-4675.86Splicing factor U2af small subunit A OS=Oryza sati... [more]
U2AFB_ARATH1.083e-4574.14Splicing factor U2af small subunit B OS=Arabidopsi... [more]
U2AFB_ORYSJ3.150e-4571.55Splicing factor U2af small subunit B OS=Oryza sati... [more]
U2AF1_DROME5.968e-2852.10Splicing factor U2af 38 kDa subunit OS=Drosophila ... [more]
U2AF4_RAT1.329e-2752.14Splicing factor U2AF 26 kDa subunit OS=Rattus norv... [more]
U2AF4_MOUSE1.329e-2752.14Splicing factor U2AF 26 kDa subunit OS=Mus musculu... [more]
U2AF4_BOVIN1.329e-2752.14Splicing factor U2AF 26 kDa subunit OS=Bos taurus ... [more]
U2AF4_HUMAN3.868e-2751.28Splicing factor U2AF 26 kDa subunit OS=Homo sapien... [more]
U2AF1_MOUSE5.052e-2751.28Splicing factor U2AF 35 kDa subunit OS=Mus musculu... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP1YK11FM1 TF Citrus clementina cDNA clone KN0AAP1YK11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC928822 ID=FC928822; Name=FC928822; organism=Citrus clementina; type=EST; length=711bp
CACTTTTACCTTTTCTTTTGAGAAGAAACTTTCGTCTAAATTAATATCTG
AAATTCCAAACCCTACTAATTTATATTATCATCTCTCCCATATTCTCATT
TTTTCAGAATAAGGATATAATATAAAAGGTTAGGGATTTCAATGATAATT
TCTTTTATCCGCAGGGACGAAGCGTCTAGAACTATTAGATCCTCGAAACA
GCTTCTCTTAAACGAACATCACAAATCGTAAAGCACTTTCCTCTTCATCG
CGGAGAAGCCAAAGCCACTGCTCCCTTCTTCTCACTACATTCCCCCAAAC
CCCCACGTAAAAAAACGCCGTCGTATTTTTGAATTTGGAGAGATTATATT
TCGAAGCCTGCGATGGTGGAGCACTTGGCGTCGATTTTCGGGACCGAGAA
AGACAGGGTAAACTGTCCGTTTTACTTCAAGATCGGCGCGTGCAGACTCG
GCGACCGATGCTCGCGTCTCCACACGAAGCCCAGTGTCAGCCCCACGCTC
TTGCTTTAGAACATGTACCAGCGGCTCGATATGATCACCCCCGGCGTCGA
CGCGCAGGGCAACCCGCTTGACCCGCGCAAAATCCAAGAACACTTTGAGG
ATTTTTATGAAGATTTGTTTGAGGAACTGAACAAATATGGTGAAATTGAG
AGCCTGAACATCTGTGACAACCTAGCTGATCATATGGTTGGTAATGTTTA
TGTGCAGTTTA
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