FC928822
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC928822 vs. ExPASy Swiss-Prot
Match: U2AFA_ARATH (Splicing factor U2af small subunit A OS=Arabidopsis thaliana GN=U2AF35A PE=1 SV=1) HSP 1 Score: 188.734 bits (478), Expect = 2.577e-47 Identity = 90/116 (77.59%), Postives = 95/116 (81.90%), Query Frame = 3 Query: 363 MVEHLASIFGTEKDRVNCPFYFKIGACRLGDRCSRLHTKPSVSPTLLL*NMYQRLDMITPGVDAQGNPLDPRKIQXXXXXXXXXXXXXXNKYGEIESLNICDNLADHMVGNVYVQF 710 M EHLASIFGTEKDRVNCPFYFKIGACR GDRCSRLH +P++SPTLLL NMYQR DMITPGVDAQG PLDPRKIQ K+GEIESLNICDNLADHM+GNVYVQF Sbjct: 1 MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITPGVDAQGQPLDPRKIQEHFEDFFEDLFEELGKFGEIESLNICDNLADHMIGNVYVQF 116
BLAST of FC928822 vs. ExPASy Swiss-Prot
Match: U2AFA_ORYSJ (Splicing factor U2af small subunit A OS=Oryza sativa subsp. japonica GN=U2AF35A PE=2 SV=1) HSP 1 Score: 186.037 bits (471), Expect = 1.670e-46 Identity = 88/116 (75.86%), Postives = 94/116 (81.03%), Query Frame = 3 Query: 363 MVEHLASIFGTEKDRVNCPFYFKIGACRLGDRCSRLHTKPSVSPTLLL*NMYQRLDMITPGVDAQGNPLDPRKIQXXXXXXXXXXXXXXNKYGEIESLNICDNLADHMVGNVYVQF 710 M EHLASIFGTEKDRVNCPFYFKIGACR GDRCSRLH KPSVSPTLLL NMY R DMITPG+DAQGNP+DP KIQ +KYGEIESL++CDN ADHM+GNVYVQF Sbjct: 1 MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNKPSVSPTLLLSNMYLRPDMITPGIDAQGNPIDPEKIQADFEDFYEDIFEELSKYGEIESLHVCDNFADHMIGNVYVQF 116
BLAST of FC928822 vs. ExPASy Swiss-Prot
Match: U2AFB_ARATH (Splicing factor U2af small subunit B OS=Arabidopsis thaliana GN=U2AF35B PE=2 SV=1) HSP 1 Score: 183.341 bits (464), Expect = 1.083e-45 Identity = 86/116 (74.14%), Postives = 93/116 (80.17%), Query Frame = 3 Query: 363 MVEHLASIFGTEKDRVNCPFYFKIGACRLGDRCSRLHTKPSVSPTLLL*NMYQRLDMITPGVDAQGNPLDPRKIQXXXXXXXXXXXXXXNKYGEIESLNICDNLADHMVGNVYVQF 710 M EHLASIFGTEKDRVNCPFYFKIGACR GDRCSRLH +P++SPTLLL NMYQR DMITPGVD QG PLDP KIQ NK+GE+ESLN+CDNLADHM+GNVYV F Sbjct: 1 MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITPGVDPQGQPLDPSKIQDHFEDFYEDIFEELNKFGEVESLNVCDNLADHMIGNVYVLF 116
BLAST of FC928822 vs. ExPASy Swiss-Prot
Match: U2AFB_ORYSJ (Splicing factor U2af small subunit B OS=Oryza sativa subsp. japonica GN=U2AF35B PE=2 SV=1) HSP 1 Score: 181.8 bits (460), Expect = 3.150e-45 Identity = 83/116 (71.55%), Postives = 95/116 (81.90%), Query Frame = 3 Query: 363 MVEHLASIFGTEKDRVNCPFYFKIGACRLGDRCSRLHTKPSVSPTLLL*NMYQRLDMITPGVDAQGNPLDPRKIQXXXXXXXXXXXXXXNKYGEIESLNICDNLADHMVGNVYVQF 710 M EHLASIFGTEKDRVNCPFYFKIGACR GDRCSRLH +P+VSPT++L NMYQR DMITPGVDAQG P+DP K+Q +K+GE+E+LN+CDNLADHM+GNVYVQF Sbjct: 1 MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTVSPTIVLANMYQRPDMITPGVDAQGQPIDPEKMQEHFEDFYEDIYEELSKFGEVETLNVCDNLADHMIGNVYVQF 116
BLAST of FC928822 vs. ExPASy Swiss-Prot
Match: U2AF1_DROME (Splicing factor U2af 38 kDa subunit OS=Drosophila melanogaster GN=U2af38 PE=1 SV=2) HSP 1 Score: 124.405 bits (311), Expect = 5.968e-28 Identity = 62/119 (52.10%), Postives = 75/119 (63.03%), Query Frame = 3 Query: 363 MVEHLASIFGTEKDRVNCPFYFKIGACRLGDRCSRLHTKPSVSPTLLL*NMY---QRLDMITPGVDAQGNPLDPRKIQXXXXXXXXXXXXXXNKYGEIESLNICDNLADHMVGNVYVQF 710 M E+LASIFGTEKD+VNC FYFKIGACR GDRCSR+H KP+ S T+LL N+Y Q G N D + +KYGEIE +N+CDNL DH+VGNVY++F Sbjct: 1 MAEYLASIFGTEKDKVNCSFYFKIGACRHGDRCSRIHNKPTFSQTVLLQNLYVNPQNSAKSADGSHLVANVSDEEMQEHYDNFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKF 119
BLAST of FC928822 vs. ExPASy Swiss-Prot
Match: U2AF4_RAT (Splicing factor U2AF 26 kDa subunit OS=Rattus norvegicus GN=U2af1l4 PE=2 SV=1) HSP 1 Score: 123.25 bits (308), Expect = 1.329e-27 Identity = 61/117 (52.14%), Postives = 75/117 (64.10%), Query Frame = 3 Query: 363 MVEHLASIFGTEKDRVNCPFYFKIGACRLGDRCSRLHTKPSVSPTLLL*NMYQRLDMITPGVDAQGNPLDPRKIQ-XXXXXXXXXXXXXXNKYGEIESLNICDNLADHMVGNVYVQF 710 M E+LASIFGTEKD+VNC FYFKIGACR GDRCSRLH KP+ S T++L N+Y+ D + ++Q KYGEIE +N+CDNL DH+VGNVYV+F Sbjct: 1 MAEYLASIFGTEKDKVNCSFYFKIGACRHGDRCSRLHNKPTFSQTIVLLNLYRNPQNTAQTADGSHCHVSDVEVQEHYDNFFEEVFTELQEKYGEIEEMNVCDNLGDHLVGNVYVKF 117
BLAST of FC928822 vs. ExPASy Swiss-Prot
Match: U2AF4_MOUSE (Splicing factor U2AF 26 kDa subunit OS=Mus musculus GN=U2af1l4 PE=1 SV=1) HSP 1 Score: 123.25 bits (308), Expect = 1.329e-27 Identity = 61/117 (52.14%), Postives = 75/117 (64.10%), Query Frame = 3 Query: 363 MVEHLASIFGTEKDRVNCPFYFKIGACRLGDRCSRLHTKPSVSPTLLL*NMYQRLDMITPGVDAQGNPLDPRKIQ-XXXXXXXXXXXXXXNKYGEIESLNICDNLADHMVGNVYVQF 710 M E+LASIFGTEKD+VNC FYFKIGACR GDRCSRLH KP+ S T++L N+Y+ D + ++Q KYGEIE +N+CDNL DH+VGNVYV+F Sbjct: 1 MAEYLASIFGTEKDKVNCSFYFKIGACRHGDRCSRLHNKPTFSQTIVLLNLYRNPQNTAQTADGSHCHVSDVEVQEHYDNFFEEVFTELQEKYGEIEEMNVCDNLGDHLVGNVYVKF 117
BLAST of FC928822 vs. ExPASy Swiss-Prot
Match: U2AF4_BOVIN (Splicing factor U2AF 26 kDa subunit OS=Bos taurus GN=U2AF1L4 PE=2 SV=1) HSP 1 Score: 123.25 bits (308), Expect = 1.329e-27 Identity = 61/117 (52.14%), Postives = 75/117 (64.10%), Query Frame = 3 Query: 363 MVEHLASIFGTEKDRVNCPFYFKIGACRLGDRCSRLHTKPSVSPTLLL*NMYQRLDMITPGVDAQGNPLDPRKIQ-XXXXXXXXXXXXXXNKYGEIESLNICDNLADHMVGNVYVQF 710 M E+LASIFGTEKD+VNC FYFKIGACR GDRCSRLH KP+ S T++L N+Y+ D + ++Q KYGEIE +N+CDNL DH+VGNVYV+F Sbjct: 1 MAEYLASIFGTEKDKVNCSFYFKIGACRHGDRCSRLHNKPTFSQTIVLLNLYRNPQNTAQTADGSHCHVSDVEVQEHYDNFFEEVFTELQEKYGEIEEMNVCDNLGDHLVGNVYVKF 117
BLAST of FC928822 vs. ExPASy Swiss-Prot
Match: U2AF4_HUMAN (Splicing factor U2AF 26 kDa subunit OS=Homo sapiens GN=U2AF1L4 PE=1 SV=2) HSP 1 Score: 121.709 bits (304), Expect = 3.868e-27 Identity = 60/117 (51.28%), Postives = 74/117 (63.25%), Query Frame = 3 Query: 363 MVEHLASIFGTEKDRVNCPFYFKIGACRLGDRCSRLHTKPSVSPTLLL*NMYQRLDMITPGVDAQGNPLDPRKIQ-XXXXXXXXXXXXXXNKYGEIESLNICDNLADHMVGNVYVQF 710 M E+LASIFGTEKD+VNC FYFKIG CR GDRCSRLH KP+ S T++L N+Y+ D + ++Q KYGEIE +N+CDNL DH+VGNVYV+F Sbjct: 1 MAEYLASIFGTEKDKVNCSFYFKIGVCRHGDRCSRLHNKPTFSQTIVLLNLYRNPQNTAQTADGSHCHVSDVEVQEHYDSFFEEVFTELQEKYGEIEEMNVCDNLGDHLVGNVYVKF 117
BLAST of FC928822 vs. ExPASy Swiss-Prot
Match: U2AF1_MOUSE (Splicing factor U2AF 35 kDa subunit OS=Mus musculus GN=U2af1 PE=2 SV=4) HSP 1 Score: 121.324 bits (303), Expect = 5.052e-27 Identity = 60/117 (51.28%), Postives = 75/117 (64.10%), Query Frame = 3 Query: 363 MVEHLASIFGTEKDRVNCPFYFKIGACRLGDRCSRLHTKPSVSPTLLL*NMYQRLDMITPGVDAQGNPLDPRKIQ-XXXXXXXXXXXXXXNKYGEIESLNICDNLADHMVGNVYVQF 710 M E+LASIFGTEKD+VNC FYFKIGACR GDRCSRLH KP+ S T+ L N+Y+ + D + ++Q KYGE+E +N+CDNL DH+VGNVYV+F Sbjct: 1 MAEYLASIFGTEKDKVNCSFYFKIGACRHGDRCSRLHNKPTFSQTIALLNIYRNPQNSSQSADGLRCAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKF 117 The following BLAST results are available for this feature:
BLAST of FC928822 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 19
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Sequences
The
following sequences are available for this feature:
EST sequence >FC928822 ID=FC928822; Name=FC928822; organism=Citrus clementina; type=EST; length=711bpback to top |