FC928828

Overview
NameFC928828
Unique NameFC928828
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length651
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig1785 contig Ccv1_Contig1785:1..651. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of FC928828 vs. ExPASy Swiss-Prot
Match: ZB14_MAIZE (14 kDa zinc-binding protein OS=Zea mays GN=ZBP14 PE=1 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 4.341e-19
Identity = 45/54 (83.33%), Postives = 48/54 (88.89%), Query Frame = 1 
Query:  487 FDKIIAKEIPSSIVYEDEKVLAFRDINPHAPVHVLIIPKFKDGLTTLAKAEARH 648
            FDKII KEIPS++VYEDEKVLAFRDINP AP H+LIIPK KDGLT LAKAE RH
Sbjct:   19 FDKIIKKEIPSTVVYEDEKVLAFRDINPQAPTHILIIPKVKDGLTGLAKAEERH 72
[Close]
BLAST of FC928828 vs. ExPASy Swiss-Prot
Match: ZB14_BRAJU (14 kDa zinc-binding protein (Fragment) OS=Brassica juncea PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 3.439e-16
Identity = 39/54 (72.22%), Postives = 46/54 (85.19%), Query Frame = 1 
Query:  487 FDKIIAKEIPSSIVYEDEKVLAFRDINPHAPVHVLIIPKFKDGLTTLAKAEARH 648
            F KII+KEIPS++VYED+KVLAFRDI P  PVH+L+IPK +DGLT L KAE RH
Sbjct:    4 FGKIISKEIPSTVVYEDDKVLAFRDITPQGPVHILLIPKVRDGLTGLFKAEERH 57
The following BLAST results are available for this feature:
BLAST of FC928828 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
ZB14_MAIZE4.341e-1983.3314 kDa zinc-binding protein OS=Zea mays GN=ZBP14 P... [more]
ZB14_BRAJU3.439e-1672.2214 kDa zinc-binding protein (Fragment) OS=Brassica... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAP1YK15FM1 TF Citrus clementina cDNA clone KN0AAP1YK15, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC928828 ID=FC928828; Name=FC928828; organism=Citrus clementina; type=EST; length=651bp
AATGTTCGAGCTTTTGCAGCAAATGTTCGAGCTCCACTGCAACACTCAAC
TAATTACAACTCTATTAACTTTCTCCTTCCTCTTCACTCTCGTAGATCTC
TGTCTCGAGTTAGTGTTACAAACGATGAAGAGGCTGCTGCCAAAGCAGCT
GCACTGAACGCCGGTAGTGAAGCTCCAACCATGTACATGAAAAACCATGG
TTTGATCTCATTTCTATTTACATGTTTAGCCTAAGCACTGGCTGTGGCTG
ACCCCTTTGCTTTGGGAGATAAATTTCATAAAACCTTGAAGGAGGTCCCT
GATTCTTTTTCTTTTTTTTTTTTTGGCCCCCTTCTTTTGGGATGCTTAGT
TGGATTTTGAAACTAGCAATTATTGGAACTGATTAAGGGCTACATGCTTT
GTTTATCCATGGGAGTAGTAATTTTTTAGTCACTATTTCTCCTAATCATT
ATTCCCCTTCTGTTTTACCCCCTCGACCCTTTCAGATTTGACAAGATCAT
AGCAAAGGAAATCCCCTCATCCATTGTATATGAGGATGAGAAGGTCCTAG
CATTTAGGGACATTAATCCGCACGCTCCTGTTCATGTTTTAATCATTCCA
AAGTTCAAAGATGGATTGACAACGCTTGCAAAGGCTGAAGCAAGGCATGG
G
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