FC928829

Overview
NameFC928829
Unique NameFC928829
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length749
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig1786 contig Ccv1_Contig1786:1..749. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC928829 vs. ExPASy Swiss-Prot
Match: AB15G_ARATH (ABC transporter G family member 15 OS=Arabidopsis thaliana GN=ABCG15 PE=2 SV=2)

HSP 1 Score: 234.187 bits (596), Expect = 8.970e-64
Identity = 112/194 (57.73%), Postives = 147/194 (75.77%), Query Frame = 3
Query:    3 IKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRIVVCSIHQPSSHXXXXXXXXXXXSNGETIYFGDAKMAVKFFAEAGFPCPSRRNPSDHFLRCINSDFDKVAGSSLKSQAPTEIPMSSNSLMYLSTEEIKAKLVEEYRNSEISMNIRKRVRELAH 584
            +++GLQ C++  IGNWH RG+S GE+KR+SI++EILT+P +L LDEPTSGLDSASAFFVIQ L+ IA DGR V+ S+HQPSS            S+GE++YFG+AK AV+FFAE+GFPCP +RNPSDHFLRCINSDFD V  +   SQ   E P +S+ LM L+T  IKA+LVE Y+ S+ + + + R+REL++
Sbjct:  149 MELGLQDCSDRVIGNWHARGVSGGERKRVSIALEILTRPQILFLDEPTSGLDSASAFFVIQALRNIARDGRTVISSVHQPSSEVFALFDDLFLLSSGESVYFGEAKSAVEFFAESGFPCPKKRNPSDHFLRCINSDFDTVTATLKGSQRIQETPATSDPLMNLATSVIKARLVENYKRSKYAKSAKSRIRELSN 342          

HSP 2 Score: 31.187 bits (69), Expect = 8.970e-64
Identity = 13/27 (48.15%), Postives = 17/27 (62.96%), Query Frame = 1
Query:  667 EETVLSKDRASWWKQLCILSHRSFLNM 747
            E  +     A+WWKQL  L+ RSF+NM
Sbjct:  347 EMEIRKGSEATWWKQLRTLTARSFINM 373          
BLAST of FC928829 vs. ExPASy Swiss-Prot
Match: AB12G_ARATH (ABC transporter G family member 12 OS=Arabidopsis thaliana GN=ABCG12 PE=1 SV=1)

HSP 1 Score: 237.269 bits (604), Expect = 1.989e-63
Identity = 119/194 (61.34%), Postives = 146/194 (75.26%), Query Frame = 3
Query:    3 IKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDG-RIVVCSIHQPSSHXXXXXXXXXXXSNGETIYFGDAKMAVKFFAEAGFPCPSRRNPSDHFLRCINSDFDKVAGSSLKSQAPTEIPMSSNSLMYLSTEEIKAKLVEEYRNSEISMNIRKRVRELA 581
            I++GLQ CA+  IGNWH RG+S GE+KR+S+++EILT+P +L LDEPTSGLDSASAFFVIQ L+ IA DG R VV SIHQPSS            S+GET+YFG++K AV+FFAEAGFPCP +RNPSDHFLRCINSDFD V  +   SQ   E P +S+ LM L+T EIKA+LVE YR S  + + + R+RELA
Sbjct:  148 IELGLQDCADRVIGNWHSRGVSGGERKRVSVALEILTRPQILFLDEPTSGLDSASAFFVIQALRNIARDGGRTVVSSIHQPSSEVFALFDDLFLLSSGETVYFGESKFAVEFFAEAGFPCPKKRNPSDHFLRCINSDFDTVTATLKGSQRIRETPATSDPLMNLATSEIKARLVENYRRSVYAKSAKSRIRELA 341          

HSP 2 Score: 26.9498 bits (58), Expect = 1.989e-63
Identity = 11/18 (61.11%), Postives = 15/18 (83.33%), Query Frame = 1
Query:  694 ASWWKQLCILSHRSFLNM 747
            A+W+KQL  L+ RSF+NM
Sbjct:  357 ATWFKQLRTLTKRSFVNM 374          
BLAST of FC928829 vs. ExPASy Swiss-Prot
Match: AB13G_ARATH (ABC transporter G family member 13 OS=Arabidopsis thaliana GN=ABCG13 PE=2 SV=1)

HSP 1 Score: 211.075 bits (536), Expect = 3.315e-57
Identity = 106/201 (52.74%), Postives = 138/201 (68.66%), Query Frame = 3
Query:    9 MGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRIVVCSIHQPSSHXXXXXXXXXXXSNGETIYFGDAKMAVKFFAEAGFPCPSRRNPSDHFLRCINSDFDKVAGSSLKSQAPTEIPMSSNSLMY----------LSTEEIKAKLVEEYRNSEISMNIRKRVRELA 581
            MGL+ C++  IGNWHLRGIS GEKKRLSI++E+LT+P++L LDEPTSGLDSASAFFV+Q+L+ IA  G+ VV SIHQPS             S GET+YFG+A+ A KFF EAGFPCPSRRNPSDHFLRC+NSDFD V  + ++S+   +   S + L            + T EI+  LV +++ S  +   R R++E+A
Sbjct:  136 MGLEECSDRTIGNWHLRGISGGEKKRLSIALEVLTKPSLLFLDEPTSGLDSASAFFVVQILRNIASSGKTVVSSIHQPSGEVFALFDDLLLLSGGETVYFGEAESATKFFGEAGFPCPSRRNPSDHFLRCVNSDFDNVTAALVESRRINDSSFSLHQLHETTNTLDPLDDIPTAEIRTTLVRKFKCSLYAAASRARIQEIA 336          

HSP 2 Score: 32.3426 bits (72), Expect = 3.315e-57
Identity = 12/19 (63.16%), Postives = 16/19 (84.21%), Query Frame = 1
Query:  691 RASWWKQLCILSHRSFLNM 747
            + +WWKQL IL+ RSF+NM
Sbjct:  350 QTNWWKQLRILTQRSFINM 368          
BLAST of FC928829 vs. ExPASy Swiss-Prot
Match: AB11G_ARATH (ABC transporter G family member 11 OS=Arabidopsis thaliana GN=ABCG11 PE=1 SV=1)

HSP 1 Score: 208.379 bits (529), Expect = 3.435e-53
Identity = 105/193 (54.40%), Postives = 133/193 (68.91%), Query Frame = 3
Query:    3 IKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRIVVCSIHQPSSHXXXXXXXXXXXSNGETIYFGDAKMAVKFFAEAGFPCPSRRNPSDHFLRCINSDFDKVAGSSLKSQAPTEIPMSSNSLMYLSTEEIKAKLVEEYRNSEISMNIRKRVRELA 581
            I+MGLQ CA+T IGNWHLRGIS GEK+R+SI++EIL +P +L LDEPTSGLDSASAFFV Q L+ ++ DGR V+ SIHQPSS            S G+T+YFG A  A +FFA+AGFPCP+ RNPSDHFLRCINSDFDKV  ++LK         S + L  ++T E    LV+ Y  S+     + +V E++
Sbjct:  173 IEMGLQDCADTVIGNWHLRGISGGEKRRVSIALEILMRPRLLFLDEPTSGLDSASAFFVTQTLRALSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGQASDAYEFFAQAGFPCPALRNPSDHFLRCINSDFDKVR-ATLKGSMKLRFEASDDPLEKITTAEAIRLLVDYYHTSDYYYTAKAKVEEIS 364          
BLAST of FC928829 vs. ExPASy Swiss-Prot
Match: ABCG1_DICDI (ABC transporter G family member 1 OS=Dictyostelium discoideum GN=abcG1 PE=3 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 2.395e-30
Identity = 64/144 (44.44%), Postives = 96/144 (66.67%), Query Frame = 3
Query:    6 KMGLQACAETKIGNWH--LRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRIVVCSIHQPSSHXXXXXXXXXXXSNGETIYFGDAKMAVKFFAEAGFPCPSRRNPSDHFLRCINSDFDKVAGS 431
            +MGL  CA+T +G     +RGIS GE++R++ISIE+LT P+V+LLDEPTSGLD++++F+V+  LK +A  GR ++C+IHQP S+            +G TIY+G A  A+++F   G+ C  + NP+D FL  IN+  +  A S
Sbjct:  243 EMGLNRCADTLVGTADNKIRGISGGERRRVTISIELLTGPSVILLDEPTSGLDASTSFYVMSALKKLAKSGRTIICTIHQPRSNIYDMFDNLLLLGDGNTIYYGKANKALEYFNANGYHCSEKTNPADFFLDLINTQVEDQADS 386          
BLAST of FC928829 vs. ExPASy Swiss-Prot
Match: WHT1_CAEEL (ABC transporter ATP-binding protein/permease wht-1 OS=Caenorhabditis elegans GN=wht-1 PE=2 SV=2)

HSP 1 Score: 120.939 bits (302), Expect = 7.212e-27
Identity = 65/147 (44.22%), Postives = 91/147 (61.90%), Query Frame = 3
Query:    6 KMGLQACAETKIGNWH-LRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRIVVCSIHQPSSHXXXXXXXXXXXSNGETIYFGDAKMAVKFFAEAGFPCPSRRNPSDHFLRCINSDFDKVAGSSLKS 443
            +MGL+ CA+T IG  + L+G+S GEKKRLS + EILT P +L  DEPTSGLD+  A  V+Q L+ +A +G  V+ +IHQPSSH           + G  IY G    AV  F + G+PCP+  NP+DH +R + +  D    +S+K+
Sbjct:  117 QMGLKKCADTVIGIPNQLKGLSCGEKKRLSFASEILTCPKILFCDEPTSGLDAFMAGHVVQALRSLADNGMTVIITIHQPSSHVYSLFNNVCLMACGRVIYLGPGDQAVPLFEKCGYPCPAYYNPADHLIRTL-AVIDSDRATSMKT 262          
BLAST of FC928829 vs. ExPASy Swiss-Prot
Match: ABCG2_HUMAN (ATP-binding cassette sub-family G member 2 OS=Homo sapiens GN=ABCG2 PE=1 SV=3)

HSP 1 Score: 120.553 bits (301), Expect = 9.419e-27
Identity = 67/192 (34.90%), Postives = 107/192 (55.73%), Query Frame = 3
Query:    6 KMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRIVVCSIHQPSSHXXXXXXXXXXXSNGETIYFGDAKMAVKFFAEAGFPCPSRRNPSDHFLRCINSDFDKVAGSSLKSQAPTEIPMSSNSLMYLSTEEIKAKLVEEYRNSEISMNIRKRVRELA 581
            ++GL   A++K+G   +RG+S GE+KR SI +E++T P++L LDEPT+GLDS++A  V+ +LK ++  GR ++ SIHQP              ++G  ++ G A+ A+ +F  AG+ C +  NP+D FL  IN D   VA +  +    TEI   S        + +  KL E Y NS      +  + +L+
Sbjct:  167 ELGLDKVADSKVGTQFIRGVSGGERKRTSIGMELITDPSILFLDEPTTGLDSSTANAVLLLLKRMSKQGRTIIFSIHQPRYSIFKLFDSLTLLASGRLMFHGPAQEALGYFESAGYHCEAYNNPADFFLDIINGDSTAVALNREEDFKATEIIEPSK-----QDKPLIEKLAEIYVNSSFYKETKAELHQLS 353          
BLAST of FC928829 vs. ExPASy Swiss-Prot
Match: ABCG2_MOUSE (ATP-binding cassette sub-family G member 2 OS=Mus musculus GN=Abcg2 PE=2 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.607e-26
Identity = 57/139 (41.01%), Postives = 90/139 (64.75%), Query Frame = 3
Query:    6 KMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRIVVCSIHQPSSHXXXXXXXXXXXSNGETIYFGDAKMAVKFFAEAGFPCPSRRNPSDHFLRCINSDFDKV 422
            ++GL+  A++K+G   +RGIS GE+KR SI +E++T P++L LDEPT+GLDS++A  V+ +LK ++  GR ++ SIHQP              ++G+ ++ G A+ A+++FA AG+ C    NP+D FL  IN D   V
Sbjct:  166 ELGLEKVADSKVGTQFIRGISGGERKRTSIGMELITDPSILFLDEPTTGLDSSTANAVLLLLKRMSKQGRTIIFSIHQPRYSIFKLFDSLTLLASGKLVFHGPAQKALEYFASAGYHCEPYNNPADFFLDVINGDSSAV 304          
BLAST of FC928829 vs. ExPASy Swiss-Prot
Match: ABCG2_MACMU (ATP-binding cassette sub-family G member 2 OS=Macaca mulatta GN=ABCG2 PE=2 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 3.579e-26
Identity = 66/192 (34.38%), Postives = 107/192 (55.73%), Query Frame = 3
Query:    6 KMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRIVVCSIHQPSSHXXXXXXXXXXXSNGETIYFGDAKMAVKFFAEAGFPCPSRRNPSDHFLRCINSDFDKVAGSSLKSQAPTEIPMSSNSLMYLSTEEIKAKLVEEYRNSEISMNIRKRVRELA 581
            ++GL   A++K+G   +RG+S GE+KR SI +E++T P++L LDEPT+GLDS++A  V+ +LK ++  GR ++ SIHQP              ++G  ++ G A+ A+ +F  AG+ C +  NP+D FL  IN D   VA +  +    TEI   S        + +  KL E Y +S      +  + +L+
Sbjct:  167 ELGLDKVADSKVGTQFIRGVSGGERKRTSIGMELITDPSILFLDEPTTGLDSSTANAVLLLLKRMSKQGRTIIFSIHQPRYSIFKLFDSLTLLASGRLMFHGPAQEALGYFESAGYHCEAYNNPADFFLDIINGDSTAVALNREEDFKATEIIEPSK-----RDKPLVEKLAEIYVDSSFYKETKAELHQLS 353          
BLAST of FC928829 vs. ExPASy Swiss-Prot
Match: ABCG2_RAT (ATP-binding cassette sub-family G member 2 OS=Rattus norvegicus GN=Abcg2 PE=1 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 1.041e-25
Identity = 57/139 (41.01%), Postives = 88/139 (63.31%), Query Frame = 3
Query:    6 KMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRIVVCSIHQPSSHXXXXXXXXXXXSNGETIYFGDAKMAVKFFAEAGFPCPSRRNPSDHFLRCINSDFDKV 422
            ++GL   A++K+G    RGIS GE+KR SI +E++T P++L LDEPT+GLDS++A  V+ +LK ++  GR ++ SIHQP              ++G+ ++ G A+ A+++FA AG+ C    NP+D FL  IN D   V
Sbjct:  166 ELGLDKVADSKVGTQFTRGISGGERKRTSIGMELITDPSILFLDEPTTGLDSSTANAVLLLLKRMSKQGRTIIFSIHQPRYSIFKLFDSLTLLASGKLMFHGPAQKALEYFASAGYHCEPYNNPADFFLDVINGDSSAV 304          
The following BLAST results are available for this feature:
BLAST of FC928829 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 122
Match NameE-valueIdentityDescription
AB15G_ARATH8.970e-6457.73ABC transporter G family member 15 OS=Arabidopsis ... [more]
AB12G_ARATH1.989e-6361.34ABC transporter G family member 12 OS=Arabidopsis ... [more]
AB13G_ARATH3.315e-5752.74ABC transporter G family member 13 OS=Arabidopsis ... [more]
AB11G_ARATH3.435e-5354.40ABC transporter G family member 11 OS=Arabidopsis ... [more]
ABCG1_DICDI2.395e-3044.44ABC transporter G family member 1 OS=Dictyostelium... [more]
WHT1_CAEEL7.212e-2744.22ABC transporter ATP-binding protein/permease wht-1... [more]
ABCG2_HUMAN9.419e-2734.90ATP-binding cassette sub-family G member 2 OS=Homo... [more]
ABCG2_MOUSE1.607e-2641.01ATP-binding cassette sub-family G member 2 OS=Mus ... [more]
ABCG2_MACMU3.579e-2634.38ATP-binding cassette sub-family G member 2 OS=Maca... [more]
ABCG2_RAT1.041e-2541.01ATP-binding cassette sub-family G member 2 OS=Ratt... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP1YK16FM1 TF Citrus clementina cDNA clone KN0AAP1YK16, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC928829 ID=FC928829; Name=FC928829; organism=Citrus clementina; type=EST; length=749bp
TCATCAAAATGGGTCTCCAAGCTTGTGCTGAAACCAAGATAGGAAATTGG
CACTTGAGGGGTATCAGCAGTGGGGAAAAGAAAAGGCTTAGCATTAGCAT
TGAGATTTTAACACAACCCACTGTCTTATTACTTGATGAACCCACTAGTG
GCCTTGATAGTGCTTCAGCTTTCTTTGTGATTCAAGTTCTGAAATGTATA
GCACTTGATGGAAGGATTGTCGTCTGCTCTATTCACCAGCCCAGCAGCCA
CCTTTTTTATTTGTTTGATGATTTGCTCCTCCTCTCTAATGGAGAAACAA
TCTATTTCGGGGATGCAAAAATGGCTGTTAAGTTCTTTGCGGAAGCCGGG
TTTCCTTGTCCATCAAGAAGAAACCCTTCGGACCATTTCCTTCGATGTAT
TAATTCTGATTTTGACAAGGTTGCTGGAAGCTCACTGAAATCTCAAGCAC
CAACTGAGATTCCAATGTCATCAAATTCCCTAATGTATTTGTCTACAGAA
GAGATCAAAGCAAAGCTTGTGGAGGAATACAGGAATTCTGAAATTTCAAT
GAATATAAGAAAAAGAGTTCGAGAGCTTGCACATAATGTACTATGTATGA
TATTTTTATTTTCTATTATCTAAGAATATCAATAATACCATTTACGACTG
AATGTTTCAGGAACAAGAGGAGACTGTATTGAGCAAGGACAGGGCAAGCT
GGTGGAAGCAGCTCTGCATATTGAGTCATCGCTCGTTCCTAAACATGTT
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