FC928831

Overview
NameFC928831
Unique NameFC928831
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length626
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14167 contig Ccv1_Contig14167:85..710. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC928831 vs. ExPASy Swiss-Prot
Match: RPG1_ARATH (Protein RUPTURED POLLEN GRAIN 1 OS=Arabidopsis thaliana GN=RPG1 PE=2 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 3.032e-27
Identity = 65/182 (35.71%), Postives = 110/182 (60.44%), Query Frame = 3
Query:   93 MFDHHQWGVAFGILGNIISFLVYLAPVPTFYRIYRKKSTESFQSLPYLVALFSSMLWFYYAL--VKQNAFLLVTINCFGCVIETIYIILFITY-APKGSRNSTVKLFVSMNVGVFSLILLLTHF-LATDSTRILILGWICVAVSVSVFAAPLSIVAQVIRTKSVEFMPFILSFFLTLSAIMW 626
            M D  Q     G++GN+ISF ++ AP  TF+RI++KKS E F  +PY+  + + MLW +Y L  V +++ L+ TIN  G VIE  Y+ +++ Y   K +    +  F+++ V +   I+L+T F L  D  +   +G IC   +++++ AP   + +V++TKSVE+MPF+LS    ++A +W
Sbjct:    1 MVDAKQVRFIIGVIGNVISFGLFAAPAKTFWRIFKKKSVEEFSYVPYVATVMNCMLWVFYGLPVVHKDSILVSTINGVGLVIELFYVGVYLMYCGHKKNHRRNILGFLALEVILVVAIILITLFALKGDFVKQTFVGVICDVFNIAMYGAPSLAIIKVVKTKSVEYMPFLLSLVCFVNAGIW 182          
BLAST of FC928831 vs. ExPASy Swiss-Prot
Match: R1AP1_XENTR (RAG1-activating protein 1 homolog OS=Xenopus tropicalis GN=rag1ap1 PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 3.598e-12
Identity = 41/143 (28.67%), Postives = 82/143 (57.34%), Query Frame = 3
Query:  198 KKSTESFQSLPYLVALFSSMLWFYYALVKQNAFLLVTINCFGCVIETIYIILFITYAPKGSRNSTVKLFVSMNVGVFSLILLLTHFLATDSTRILILGWICVAVSVSVFAAPLSIVAQVIRTKSVEFMPFILSFFLTLSAIMW 626
            K+S E+ Q LP+L    +++ WFYY  +K +  L++ +N  G  ++T+Y+  +I Y+ +  R    ++ VS+ V +F      T +    ++R+  LG  C   ++S++ +PL+ +AQ+I++KS + + F L+    L++  W
Sbjct:   32 KRSVENIQFLPFLTTDLNNLGWFYYGYLKGDGTLII-VNLIGASLQTLYMAAYILYSLE-RRYVVSQVLVSLGV-LFLAHCYFTLWTPDINSRLNQLGLFCSIFTISMYLSPLADLAQIIKSKSTKCLSFPLTVATFLTSTSW 171          
BLAST of FC928831 vs. ExPASy Swiss-Prot
Match: R1AP1_XENLA (RAG1-activating protein 1 homolog OS=Xenopus laevis GN=rag1ap1 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.047e-11
Identity = 41/148 (27.70%), Postives = 84/148 (56.76%), Query Frame = 3
Query:  198 KKSTESFQSLPYLVALFSSMLWFYYALVKQNAFLLVTINCFGCVIETIYIILFITYAPKGSRNSTVKLFVSMNVGVFSLILLL-----THFLATDSTRILILGWICVAVSVSVFAAPLSIVAQVIRTKSVEFMPFILSFFLTLSAIMW 626
            ++S E+ Q LP+L    +++ WFYY  +K +  L++ +N  G  ++++Y+  ++ Y+P+       + +V   V V   +LLL     T ++   ++R+  LG  C   ++S++ +PL+ +AQ+IR+KS + + F L+    L++  W
Sbjct:   32 QRSVENIQYLPFLTTDLNNLGWFYYGYLKGDGTLMI-VNVIGASLQSLYMGAYLLYSPE-------RRYVGSQVLVSLGVLLLGYCYFTLWILDLNSRLNQLGLFCSVFTISMYLSPLADLAQIIRSKSTKCLSFPLTVATFLTSSSW 171          
BLAST of FC928831 vs. ExPASy Swiss-Prot
Match: R1AP1_PAPAN (RAG1-activating protein 1 OS=Papio anubis GN=RAG1AP1 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.786e-11
Identity = 41/145 (28.28%), Postives = 80/145 (55.17%), Query Frame = 3
Query:  201 KSTESFQSLPYLVALFSSMLWFYYALVKQNAFLLVTINCFGCVIETIYIILFITYAPKGSRNSTVKLFVSMNVGVFSLILLLTHF---LATDSTRILILGWICVAVSVSVFAAPLSIVAQVIRTKSVEFMPFILSFFLTLSAIMW 626
            +S ++ Q LP+L    +++ W  Y  +K +  L+V +N  G  ++T+YI+ ++ Y P   R   V L  +  +GV  L+L   +F   +     R+ +LG  C   ++S++ +PL+ +A+VI+TKS + + + L+    L++  W
Sbjct:   37 RSVDNVQFLPFLTTEVNNLGWLSYGALKGDRILIV-VNTVGAALQTLYILAYLHYCP---RKRVVLLQTATLLGV--LLLGYGYFWLLVPNPEARLQLLGLFCSVFTISMYLSPLADLAKVIQTKSTQCLSYPLTIATVLTSASW 175          
BLAST of FC928831 vs. ExPASy Swiss-Prot
Match: R1AP1_MOUSE (RAG1-activating protein 1 OS=Mus musculus GN=Rag1ap1 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.332e-11
Identity = 39/146 (26.71%), Postives = 79/146 (54.11%), Query Frame = 3
Query:  195 RKKSTESFQSLPYLVALFSSMLWFYYALVKQNAFLLVTINCFGCVIETIYIILFITYAPK--GSRNSTVKLFVSMNVGVFSLILLLTHFLATDSTRILILGWICVAVSVSVFAAPLSIVAQVIRTKSVEFMPFILSFFLTLSAIMW 626
            R +S ++ Q LP+L    +++ W  Y ++K +  L++ +N  G V++T+YI+ ++ Y+P+  G    T  L   + +G     LL+    A    R+  LG  C   ++S++ +PL+ +A++++TKS + + F L+      +  W
Sbjct:   35 RTRSVDNIQFLPFLTTDVNNLSWLSYGVLKGDGTLII-VNSVGAVLQTLYILAYLHYSPQKHGVLLQTATLLAVLLLGYGYFWLLVPDLEA----RLQQLGLFCSVFTISMYLSPLADLAKIVQTKSTQRLSFSLTIATLFCSASW 175          
BLAST of FC928831 vs. ExPASy Swiss-Prot
Match: R1AP1_HUMAN (RAG1-activating protein 1 OS=Homo sapiens GN=RAG1AP1 PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 6.785e-11
Identity = 41/145 (28.28%), Postives = 79/145 (54.48%), Query Frame = 3
Query:  201 KSTESFQSLPYLVALFSSMLWFYYALVKQNAFLLVTINCFGCVIETIYIILFITYAPKGSRNSTVKLFVSMNVGVFSLILLLTHF---LATDSTRILILGWICVAVSVSVFAAPLSIVAQVIRTKSVEFMPFILSFFLTLSAIMW 626
            +S ++ Q LP+L    +++ W  Y  +K +  L+V +N  G  ++T+YI+ ++ Y P   R   V L  +  +GV  L+L   +F   +     R+  LG  C   ++S++ +PL+ +A+VI+TKS + + + L+    L++  W
Sbjct:   37 RSVDNVQFLPFLTTEVNNLGWLSYGALKGDGILIV-VNTVGAALQTLYILAYLHYCP---RKRVVLLQTATLLGV--LLLGYGYFWLLVPNPEARLQQLGLFCSVFTISMYLSPLADLAKVIQTKSTQCLSYPLTIATLLTSASW 175          
The following BLAST results are available for this feature:
BLAST of FC928831 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
RPG1_ARATH3.032e-2735.71Protein RUPTURED POLLEN GRAIN 1 OS=Arabidopsis tha... [more]
R1AP1_XENTR3.598e-1228.67RAG1-activating protein 1 homolog OS=Xenopus tropi... [more]
R1AP1_XENLA1.047e-1127.70RAG1-activating protein 1 homolog OS=Xenopus laevi... [more]
R1AP1_PAPAN1.786e-1128.28RAG1-activating protein 1 OS=Papio anubis GN=RAG1A... [more]
R1AP1_MOUSE2.332e-1126.71RAG1-activating protein 1 OS=Mus musculus GN=Rag1a... [more]
R1AP1_HUMAN6.785e-1128.28RAG1-activating protein 1 OS=Homo sapiens GN=RAG1A... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAP1YK18FM1 TF Citrus clementina cDNA clone KN0AAP1YK18, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC928831 ID=FC928831; Name=FC928831; organism=Citrus clementina; type=EST; length=626bp
CTTTGAGATCGAGGCCCTTGCTTGATCTTCTGCTCAAATTTCGTTGTTGA
GTGTTCAAAATTCATTTTTTGTTTGCTAAGAAAATGGCCATAATGTTCGA
TCACCATCAATGGGGAGTTGCATTTGGCATCTTAGGTAACATTATCTCGT
TCCTCGTGTACCTGGCTCCGGTGCCAACATTTTACCGAATTTACAGAAAA
AAATCAACAGAGAGCTTCCAGTCTCTGCCTTATCTGGTAGCATTGTTCAG
CTCAATGCTGTGGTTCTACTATGCGCTTGTGAAACAAAATGCTTTCCTTC
TCGTTACCATCAACTGCTTTGGATGTGTCATTGAGACTATTTACATCATC
CTCTTCATCACTTATGCCCCAAAAGGCAGCCGGAACTCAACTGTCAAACT
ATTTGTTTCGATGAACGTTGGAGTGTTCTCTTTGATTCTTCTTCTCACAC
ACTTTCTTGCAACCGATTCAACTCGGATCCTAATTCTTGGTTGGATTTGT
GTTGCCGTTTCTGTTAGTGTCTTTGCAGCACCCTTAAGCATTGTTGCACA
AGTTATCCGAACAAAAAGTGTTGAGTTCATGCCATTCATCCTATCATTTT
TTCTTACGCTGAGTGCAATTATGTGG
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