FC928832

Overview
NameFC928832
Unique NameFC928832
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length631
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC928832_ssr37 microsatellite FC928832_ssr37:37..56. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig1787 contig Ccv1_Contig1787:1..631. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC928832 vs. ExPASy Swiss-Prot
Match: XYLL2_ARATH (D-xylose-proton symporter-like 2 OS=Arabidopsis thaliana GN=At5g17010 PE=1 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 1.753e-30
Identity = 71/126 (56.35%), Postives = 88/126 (69.84%), Query Frame = 1
Query:  130 MATDPEQARARLSSFGKVGKSSGEIGSAEEELLIANGIRPSPENYSVSAAIXXXXXXXXXXXXXXXDIGSTSCATISIESPTLSGISWYDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRE 507
            MA DPEQ +   S   + GKSSGEI    E L+  N +   PENYSV AAI               +IG+TSCATIS++SP+LSGISWY+LSSV++GL+TSGSLYGAL GSI+AF IAD++GRR+E
Sbjct:    1 MALDPEQQQPISSVSREFGKSSGEISPEREPLIKENHV---PENYSVVAAILPFLFPALGGLLYGYEIGATSCATISLQSPSLSGISWYNLSSVDVGLVTSGSLYGALFGSIVAFTIADVIGRRKE 123          
BLAST of FC928832 vs. ExPASy Swiss-Prot
Match: XYLL1_ARATH (D-xylose-proton symporter-like 1 OS=Arabidopsis thaliana GN=At3g03090 PE=2 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 6.236e-28
Identity = 72/128 (56.25%), Postives = 89/128 (69.53%), Query Frame = 1
Query:  130 MATDPEQARARLSSFGKV--GKSSGEIGSAEEELLIANGIRPSPENYSVSAAIXXXXXXXXXXXXXXXDIGSTSCATISIESPTLSGISWYDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRE 507
            M  DPE     +SS G+V    SSG I + +E LL  N    SPENYSV AAI               +IG+TSCA +S++SPTLSGISWYDLSSV++G+ITSGSLYGALIGSI+AF++ADI+GRR+E
Sbjct:    1 MGFDPENQS--ISSVGQVVGDSSSGGITAEKEPLLKENH---SPENYSVLAAIPPFLFPALGALLFGYEIGATSCAIMSLKSPTLSGISWYDLSSVDVGIITSGSLYGALIGSIVAFSVADIIGRRKE 123          
BLAST of FC928832 vs. ExPASy Swiss-Prot
Match: XYLL3_ARATH (D-xylose-proton symporter-like 3 OS=Arabidopsis thaliana GN=At5g59250 PE=2 SV=2)

HSP 1 Score: 88.1965 bits (217), Expect = 3.792e-17
Identity = 42/86 (48.84%), Postives = 59/86 (68.60%), Query Frame = 1
Query:  250 SPENYSVSAAIXXXXXXXXXXXXXXXDIGSTSCATISIESPTLSGISWYDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRE 507
            +PE++S S+ I               DIG+TS AT+S++SP LSG +W++ S V++GL+ SGSLYGAL+GSI  + +AD LGRRRE
Sbjct:   89 APESFSWSSVILPFIFPALGGLLFGYDIGATSGATLSLQSPALSGTTWFNFSPVQLGLVVSGSLYGALLGSISVYGVADFLGRRRE 174          
The following BLAST results are available for this feature:
BLAST of FC928832 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
XYLL2_ARATH1.753e-3056.35D-xylose-proton symporter-like 2 OS=Arabidopsis th... [more]
XYLL1_ARATH6.236e-2856.25D-xylose-proton symporter-like 1 OS=Arabidopsis th... [more]
XYLL3_ARATH3.792e-1748.84D-xylose-proton symporter-like 3 OS=Arabidopsis th... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAP1YK19FM1 TF Citrus clementina cDNA clone KN0AAP1YK19, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC928832 ID=FC928832; Name=FC928832; organism=Citrus clementina; type=EST; length=631bp
CTCTACGCTTATTCCTTGCAGCAAGCAACACCCGCCTTAAATTAAATTAA
ATTAAATAGAAATACGATTAGAGCTCCAGATAATGTTAATAAACTAGAAT
AATTTATCAGAGTTTGGTCAGAAGTTAGAATGGCGACTGATCCTGAGCAA
GCGCGAGCGAGACTCTCCTCTTTCGGAAAGGTGGGAAAGTCATCTGGAGA
GATTGGGAGTGCAGAAGAAGAGCTACTTATTGCTAATGGAATCCGTCCAT
CTCCCGAAAATTATTCTGTTTCTGCTGCAATTCTCCCATTTCTATTTCCA
GCCCTTGGAGGTCTTCTCTATGGTTATGATATTGGGTCCACTTCCTGCGC
TACCATTTCTATTGAGTCACCCACATTAAGCGGAATTTCGTGGTACGACT
TATCTTCTGTGGAAATTGGTCTTATCACTAGTGGATCATTGTATGGGGCC
TTGATTGGTTCCATTTTAGCGTTTAACATTGCCGACATTCTGGGGCGTAG
AAGGGAGTTGATTTTGGCTGCTCTCTTGTATCTTGTTGGAGCACTTGTAA
CGGCATTGGCACCTGACTTCATTATTATGGTTGTTGGGCGTTTCGTATTC
GGCATAGGAATTGGTCTGGCAATGCATGCTG
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