FC928834
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC928834 vs. ExPASy Swiss-Prot
Match: GGPPS_HEVBR (Geranylgeranyl pyrophosphate synthetase, chloroplastic OS=Hevea brasiliensis GN=GGPS PE=1 SV=1) HSP 1 Score: 157.918 bits (398), Expect = 4.277e-38 Identity = 86/161 (53.42%), Postives = 108/161 (67.08%), Query Frame = 1 Query: 4 RVVRAITXXXXXXXXXXXXXXQVTDLDSEGK-DVSLSELEYIHVHKTAKLLEASXXXXXXXXXXXXXXXERVRNYARCIGLLFQVVDDILDVTKSSTVLGKTAGKDLVSDKATYPKLMGIENAKKFAEELFSQATKELAYFEVSEAAPLYHLAKYIVSRQN 483 R+VRA+ QV D++SEG +V L +LE+IH+HKTAKLLE + E++R YAR IGLLFQVVDDILDVTKSS LGKTAGKDLV+DK TYPKL+GIE +++FAE+L +A ++LA F+ +AAPL LA YI RQN Sbjct: 210 RIVRAVGELAKAIGAEGLVAGQVVDINSEGSSEVDLEKLEFIHIHKTAKLLEGAVVLGAILGGGTDEEVEKLRKYARDIGLLFQVVDDILDVTKSSQELGKTAGKDLVADKVTYPKLLGIEKSREFAEKLNKEAQEQLAGFDPEKAAPLIALANYIAHRQN 370
BLAST of FC928834 vs. ExPASy Swiss-Prot
Match: GGPPS_SINAL (Geranylgeranyl pyrophosphate synthetase, chloroplastic/chromoplastic OS=Sinapis alba GN=GGPS1 PE=1 SV=1) HSP 1 Score: 156.377 bits (394), Expect = 1.244e-37 Identity = 86/163 (52.76%), Postives = 106/163 (65.03%), Query Frame = 1 Query: 4 RVVRAITXXXXXXXXXXXXXXQVTDLDSEGKD---VSLSELEYIHVHKTAKLLEASXXXXXXXXXXXXXXXERVRNYARCIGLLFQVVDDILDVTKSSTVLGKTAGKDLVSDKATYPKLMGIENAKKFAEELFSQATKELAYFEVSEAAPLYHLAKYIVSRQN 483 RVVRA+ QV D+ SEG D V L L++IH+HKTA LLEAS ER+R +ARCIGLLFQVVDDILDVTKSS LGKTAGKDL++DK TYPKLMG+E +++FAE+L ++A +L F+ + APL LA YI +RQN Sbjct: 204 RVVRAVGELAKAIGTEGLVAGQVVDISSEGLDLNNVGLEHLKFIHLHKTAALLEASAVLGGIIGGGSDEEIERLRKFARCIGLLFQVVDDILDVTKSSQELGKTAGKDLIADKLTYPKLMGLEKSREFAEKLNTEARDQLLGFDSDKVAPLLALANYIANRQN 366
BLAST of FC928834 vs. ExPASy Swiss-Prot
Match: GGPP1_ARATH (Geranylgeranyl pyrophosphate synthetase 1, chloroplastic OS=Arabidopsis thaliana GN=GGPS1 PE=2 SV=2) HSP 1 Score: 155.992 bits (393), Expect = 1.625e-37 Identity = 86/163 (52.76%), Postives = 104/163 (63.80%), Query Frame = 1 Query: 4 RVVRAITXXXXXXXXXXXXXXQVTDLDSEG---KDVSLSELEYIHVHKTAKLLEASXXXXXXXXXXXXXXXERVRNYARCIGLLFQVVDDILDVTKSSTVLGKTAGKDLVSDKATYPKLMGIENAKKFAEELFSQATKELAYFEVSEAAPLYHLAKYIVSRQN 483 RVVRA+ QV D+ SEG DV L LE+IH+HKTA LLEAS ER+R +ARCIGLLFQVVDDILDVTKSS LGKTAGKDL++DK TYPK+MG+E +++FAE+L +A +L F+ + APL LA YI RQN Sbjct: 209 RVVRAVGELAKAIGTEGLVAGQVVDISSEGLDLNDVGLEHLEFIHLHKTAALLEASAVLGAIVGGGSDDEIERLRKFARCIGLLFQVVDDILDVTKSSKELGKTAGKDLIADKLTYPKIMGLEKSREFAEKLNREARDQLLGFDSDKVAPLLALANYIAYRQN 371
BLAST of FC928834 vs. ExPASy Swiss-Prot
Match: GGPPS_CATRO (Geranylgeranyl pyrophosphate synthetase, chloroplastic OS=Catharanthus roseus GN=GGPS1 PE=3 SV=1) HSP 1 Score: 152.525 bits (384), Expect = 1.797e-36 Identity = 83/162 (51.23%), Postives = 104/162 (64.20%), Query Frame = 1 Query: 1 DRVVRAITXXXXXXXXXXXXXXQVTDLDSEG-KDVSLSELEYIHVHKTAKLLEASXXXXXXXXXXXXXXXERVRNYARCIGLLFQVVDDILDVTKSSTVLGKTAGKDLVSDKATYPKLMGIENAKKFAEELFSQATKELAYFEVSEAAPLYHLAKYIVSRQN 483 +R+VR + QV D+ SEG DV L LE+IH+HKTA LLE S ++R +ARCIGLLFQVVDDILDVTKSS LGKTAGKDLV+DK TYPKL+GI+ +++FAE+L +A ++LA F+ +AAPL LA YI R N Sbjct: 196 ERIVRVVGELAKCIGSEGLVAGQVVDVCSEGIADVGLEHLEFIHIHKTAALLEGSVVLGAIVGGANDEQISKLRKFARCIGLLFQVVDDILDVTKSSQELGKTAGKDLVADKVTYPKLLGIDKSREFAEKLNREAQEQLAEFDPEKAAPLIALANYIAYRDN 357
BLAST of FC928834 vs. ExPASy Swiss-Prot
Match: GGPPS_CAPAN (Geranylgeranyl pyrophosphate synthetase, chloroplastic OS=Capsicum annuum GN=GGPS1 PE=3 SV=1) HSP 1 Score: 147.902 bits (372), Expect = 4.426e-35 Identity = 84/161 (52.17%), Postives = 100/161 (62.11%), Query Frame = 1 Query: 4 RVVRAITXXXXXXXXXXXXXXQVTDLDSEGK-DVSLSELEYIHVHKTAKLLEASXXXXXXXXXXXXXXXERVRNYARCIGLLFQVVDDILDVTKSSTVLGKTAGKDLVSDKATYPKLMGIENAKKFAEELFSQATKELAYFEVSEAAPLYHLAKYIVSRQN 483 R+V A+ QV D+ G VSL LE+IHVHKTA LLE+S E++R +ARCIGLLFQVVDDILDVTKSS LGKTAGKDLV DK TYPKL+G+E AK+FA EL +A ++L F+ +AAPL LA YI R N Sbjct: 209 RIVGAVAELAKSIGTEGLVAGQVADIKCTGNASVSLETLEFIHVHKTAALLESSVVLGAILGGGTNVEVEKLRRFARCIGLLFQVVDDILDVTKSSEELGKTAGKDLVVDKTTYPKLLGLEKAKEFAAELNREAKQQLEGFDSRKAAPLIALADYIAYRDN 369
BLAST of FC928834 vs. ExPASy Swiss-Prot
Match: GGPP3_ARATH (Geranylgeranyl pyrophosphate synthetase 3, chloroplastic OS=Arabidopsis thaliana GN=GGPP3 PE=2 SV=1) HSP 1 Score: 140.969 bits (354), Expect = 5.410e-33 Identity = 78/164 (47.56%), Postives = 104/164 (63.41%), Query Frame = 1 Query: 1 DRVVRAITXXXXXXXXXXXXXXQVTDLDSEGKD---VSLSELEYIHVHKTAKLLEASXXXXXXXXXXXXXXXERVRNYARCIGLLFQVVDDILDVTKSSTVLGKTAGKDLVSDKATYPKLMGIENAKKFAEELFSQATKELAYFEVSEAAPLYHLAKYIVSRQN 483 +R++RA+ Q+ DL SE + V L LE+IH+HKTA LLEA+ E++R YARCIGLLFQVVDDILDVTKS+ LGKTAGKD+++ K TYP+L+G+E +K+ AE+L +A ++L F+ S+AAPL LA YI R N Sbjct: 197 ERMIRAVVELARAIGTTGLVAGQMIDLASERLNPDKVGLEHLEFIHLHKTAALLEAAAVLGVIMGGGTEEEIEKLRKYARCIGLLFQVVDDILDVTKSTEELGKTAGKDVMAGKLTYPRLIGLERSKEVAEKLRREAEEQLLGFDPSKAAPLVALASYIACRHN 360
BLAST of FC928834 vs. ExPASy Swiss-Prot
Match: GGPP4_ARATH (Geranylgeranyl pyrophosphate synthetase 4 OS=Arabidopsis thaliana GN=GGPP4 PE=2 SV=1) HSP 1 Score: 140.198 bits (352), Expect = 9.228e-33 Identity = 78/163 (47.85%), Postives = 97/163 (59.51%), Query Frame = 1 Query: 4 RVVRAITXXXXXXXXXXXXXXQVTDLDSEG---KDVSLSELEYIHVHKTAKLLEASXXXXXXXXXXXXXXXERVRNYARCIGLLFQVVDDILDVTKSSTVLGKTAGKDLVSDKATYPKLMGIENAKKFAEELFSQATKELAYFEVSEAAPLYHLAKYIVSRQN 483 ++VRA+ Q DL SEG DV L +LEYIHVHKT LLEAS E+VRN+ARCIGLLFQVVDDILD TKSS LGKTAGKD V+ K TYPK++G+E +K+F E+L A + L F+ + PL L +I +R + Sbjct: 210 KMVRAVKELAKSIGTKGLVAGQAKDLSSEGLEQNDVGLEDLEYIHVHKTGSLLEASAVIGAVIGGGTEKEIEKVRNFARCIGLLFQVVDDILDETKSSEELGKTAGKDKVAGKLTYPKVIGVEKSKEFVEKLKRDAREHLQGFDSDKVKPLIALTNFIANRNH 372
BLAST of FC928834 vs. ExPASy Swiss-Prot
Match: GGPP6_ARATH (Geranylgeranyl pyrophosphate synthetase 6, mitochondrial OS=Arabidopsis thaliana GN=GGPP6 PE=2 SV=2) HSP 1 Score: 135.191 bits (339), Expect = 2.969e-31 Identity = 73/166 (43.98%), Postives = 100/166 (60.24%), Query Frame = 1 Query: 1 DRVVRAITXXXXXXXXXXXXXXQVTDLDSE-----GKDVSLSELEYIHVHKTAKLLEASXXXXXXXXXXXXXXXERVRNYARCIGLLFQVVDDILDVTKSSTVLGKTAGKDLVSDKATYPKLMGIENAKKFAEELFSQATKELAYFEVSEAAPLYHLAKYIVSRQN 483 +RV+RA+ Q DL E +D L LE +HVHKTA L+EA+ ER+++YARC+GL+FQV+DD+LD TKSS LGKTAGKDL++ K TYPK+MG++NA+++A+ L +A + L F+ + PL LA YIV RQN Sbjct: 171 ERVLRAVQEMARAVGTEGLVAGQAADLAGERMSFKNEDDELRYLELMHVHKTAVLVEAAAVVGAIMGGGSDEEIERLKSYARCVGLMFQVMDDVLDETKSSEELGKTAGKDLITGKLTYPKVMGVDNAREYAKRLNREAQEHLQGFDSDKVVPLLSLADYIVKRQN 336
BLAST of FC928834 vs. ExPASy Swiss-Prot
Match: GGPP2_ARATH (Geranylgeranyl pyrophosphate synthetase 2 OS=Arabidopsis thaliana GN=GGPP2 PE=2 SV=2) HSP 1 Score: 128.642 bits (322), Expect = 2.779e-29 Identity = 74/162 (45.68%), Postives = 92/162 (56.79%), Query Frame = 1 Query: 1 DRVVRAITXXXXXXXXXXXXXXQVTDLDSEGKD---VSLSELEYIHVHKTAKLLEASXXXXXXXXXXXXXXXERVRNYARCIGLLFQVVDDILDVTKSSTVLGKTAGKDLVSDKATYPKLMGIENAKKFAEELFSQATKELAYFEVSEAAPLYHLAKYIVSR 477 +R+V A+ Q D+ SEG D V L LE+IHVHKTA LLE + E VR +ARCIGLLFQVVDDILD TKSS LGKTAGKD ++ K TYPKL+G+E +K+F + L A + L F + APL L +I +R Sbjct: 213 ERMVWAVRELARSIGTRGLVAGQAMDISSEGLDLNEVGLEHLEFIHVHKTAVLLETAAVLGAIIGGGSDEEIESVRKFARCIGLLFQVVDDILDETKSSEELGKTAGKDQLAGKLTYPKLIGLEKSKEFVKRLTKDARQHLQGFSSEKVAPLVALTTFIANR 374
BLAST of FC928834 vs. ExPASy Swiss-Prot
Match: CRTE_CYAPA (Geranylgeranyl pyrophosphate synthetase homolog OS=Cyanophora paradoxa GN=crtE PE=3 SV=1) HSP 1 Score: 115.161 bits (287), Expect = 3.179e-25 Identity = 64/162 (39.51%), Postives = 90/162 (55.56%), Query Frame = 1 Query: 1 DRVVRAITXXXXXXXXXXXXXXQVTDLDSEGK-DVSLSELEYIHVHKTAKLLEASXXXXXXXXXXXXXXXERVRNYARCIGLLFQVVDDILDVTKSSTVLGKTAGKDLVSDKATYPKLMGIENAKKFAEELFSQATKELAYFEVSEAAPLYHLAKYIVSRQN 483 D +V+ I Q+ DL SEGK D +L L +IH+HKT LLEA+ R YA+ IGL FQ++DD+LD+ + LGK+ GKDL + KATYP G+E + K AE L +A +E+ YF+ ++A PL +A +IV+R N Sbjct: 140 DLIVKVIAQVAHSVTTSGLVGGQIIDLSSEGKSDTTLETLNFIHIHKTGALLEAAVLSGALLAGAKEKDMNRFLRYAQNIGLAFQIIDDVLDIISTEEKLGKSIGKDLKTQKATYPSFWGVEESIKQAELLVEEAKEEILYFD-NKAIPLIAIADFIVNRNN 300 The following BLAST results are available for this feature:
BLAST of FC928834 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 17
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >FC928834 ID=FC928834; Name=FC928834; organism=Citrus clementina; type=EST; length=664bpback to top |