FC928834

Overview
NameFC928834
Unique NameFC928834
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length664
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10613 contig Ccv1_Contig10613:634..1297. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC928834 vs. ExPASy Swiss-Prot
Match: GGPPS_HEVBR (Geranylgeranyl pyrophosphate synthetase, chloroplastic OS=Hevea brasiliensis GN=GGPS PE=1 SV=1)

HSP 1 Score: 157.918 bits (398), Expect = 4.277e-38
Identity = 86/161 (53.42%), Postives = 108/161 (67.08%), Query Frame = 1
Query:    4 RVVRAITXXXXXXXXXXXXXXQVTDLDSEGK-DVSLSELEYIHVHKTAKLLEASXXXXXXXXXXXXXXXERVRNYARCIGLLFQVVDDILDVTKSSTVLGKTAGKDLVSDKATYPKLMGIENAKKFAEELFSQATKELAYFEVSEAAPLYHLAKYIVSRQN 483
            R+VRA+               QV D++SEG  +V L +LE+IH+HKTAKLLE +               E++R YAR IGLLFQVVDDILDVTKSS  LGKTAGKDLV+DK TYPKL+GIE +++FAE+L  +A ++LA F+  +AAPL  LA YI  RQN
Sbjct:  210 RIVRAVGELAKAIGAEGLVAGQVVDINSEGSSEVDLEKLEFIHIHKTAKLLEGAVVLGAILGGGTDEEVEKLRKYARDIGLLFQVVDDILDVTKSSQELGKTAGKDLVADKVTYPKLLGIEKSREFAEKLNKEAQEQLAGFDPEKAAPLIALANYIAHRQN 370          
BLAST of FC928834 vs. ExPASy Swiss-Prot
Match: GGPPS_SINAL (Geranylgeranyl pyrophosphate synthetase, chloroplastic/chromoplastic OS=Sinapis alba GN=GGPS1 PE=1 SV=1)

HSP 1 Score: 156.377 bits (394), Expect = 1.244e-37
Identity = 86/163 (52.76%), Postives = 106/163 (65.03%), Query Frame = 1
Query:    4 RVVRAITXXXXXXXXXXXXXXQVTDLDSEGKD---VSLSELEYIHVHKTAKLLEASXXXXXXXXXXXXXXXERVRNYARCIGLLFQVVDDILDVTKSSTVLGKTAGKDLVSDKATYPKLMGIENAKKFAEELFSQATKELAYFEVSEAAPLYHLAKYIVSRQN 483
            RVVRA+               QV D+ SEG D   V L  L++IH+HKTA LLEAS               ER+R +ARCIGLLFQVVDDILDVTKSS  LGKTAGKDL++DK TYPKLMG+E +++FAE+L ++A  +L  F+  + APL  LA YI +RQN
Sbjct:  204 RVVRAVGELAKAIGTEGLVAGQVVDISSEGLDLNNVGLEHLKFIHLHKTAALLEASAVLGGIIGGGSDEEIERLRKFARCIGLLFQVVDDILDVTKSSQELGKTAGKDLIADKLTYPKLMGLEKSREFAEKLNTEARDQLLGFDSDKVAPLLALANYIANRQN 366          
BLAST of FC928834 vs. ExPASy Swiss-Prot
Match: GGPP1_ARATH (Geranylgeranyl pyrophosphate synthetase 1, chloroplastic OS=Arabidopsis thaliana GN=GGPS1 PE=2 SV=2)

HSP 1 Score: 155.992 bits (393), Expect = 1.625e-37
Identity = 86/163 (52.76%), Postives = 104/163 (63.80%), Query Frame = 1
Query:    4 RVVRAITXXXXXXXXXXXXXXQVTDLDSEG---KDVSLSELEYIHVHKTAKLLEASXXXXXXXXXXXXXXXERVRNYARCIGLLFQVVDDILDVTKSSTVLGKTAGKDLVSDKATYPKLMGIENAKKFAEELFSQATKELAYFEVSEAAPLYHLAKYIVSRQN 483
            RVVRA+               QV D+ SEG    DV L  LE+IH+HKTA LLEAS               ER+R +ARCIGLLFQVVDDILDVTKSS  LGKTAGKDL++DK TYPK+MG+E +++FAE+L  +A  +L  F+  + APL  LA YI  RQN
Sbjct:  209 RVVRAVGELAKAIGTEGLVAGQVVDISSEGLDLNDVGLEHLEFIHLHKTAALLEASAVLGAIVGGGSDDEIERLRKFARCIGLLFQVVDDILDVTKSSKELGKTAGKDLIADKLTYPKIMGLEKSREFAEKLNREARDQLLGFDSDKVAPLLALANYIAYRQN 371          
BLAST of FC928834 vs. ExPASy Swiss-Prot
Match: GGPPS_CATRO (Geranylgeranyl pyrophosphate synthetase, chloroplastic OS=Catharanthus roseus GN=GGPS1 PE=3 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 1.797e-36
Identity = 83/162 (51.23%), Postives = 104/162 (64.20%), Query Frame = 1
Query:    1 DRVVRAITXXXXXXXXXXXXXXQVTDLDSEG-KDVSLSELEYIHVHKTAKLLEASXXXXXXXXXXXXXXXERVRNYARCIGLLFQVVDDILDVTKSSTVLGKTAGKDLVSDKATYPKLMGIENAKKFAEELFSQATKELAYFEVSEAAPLYHLAKYIVSRQN 483
            +R+VR +               QV D+ SEG  DV L  LE+IH+HKTA LLE S                ++R +ARCIGLLFQVVDDILDVTKSS  LGKTAGKDLV+DK TYPKL+GI+ +++FAE+L  +A ++LA F+  +AAPL  LA YI  R N
Sbjct:  196 ERIVRVVGELAKCIGSEGLVAGQVVDVCSEGIADVGLEHLEFIHIHKTAALLEGSVVLGAIVGGANDEQISKLRKFARCIGLLFQVVDDILDVTKSSQELGKTAGKDLVADKVTYPKLLGIDKSREFAEKLNREAQEQLAEFDPEKAAPLIALANYIAYRDN 357          
BLAST of FC928834 vs. ExPASy Swiss-Prot
Match: GGPPS_CAPAN (Geranylgeranyl pyrophosphate synthetase, chloroplastic OS=Capsicum annuum GN=GGPS1 PE=3 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 4.426e-35
Identity = 84/161 (52.17%), Postives = 100/161 (62.11%), Query Frame = 1
Query:    4 RVVRAITXXXXXXXXXXXXXXQVTDLDSEGK-DVSLSELEYIHVHKTAKLLEASXXXXXXXXXXXXXXXERVRNYARCIGLLFQVVDDILDVTKSSTVLGKTAGKDLVSDKATYPKLMGIENAKKFAEELFSQATKELAYFEVSEAAPLYHLAKYIVSRQN 483
            R+V A+               QV D+   G   VSL  LE+IHVHKTA LLE+S               E++R +ARCIGLLFQVVDDILDVTKSS  LGKTAGKDLV DK TYPKL+G+E AK+FA EL  +A ++L  F+  +AAPL  LA YI  R N
Sbjct:  209 RIVGAVAELAKSIGTEGLVAGQVADIKCTGNASVSLETLEFIHVHKTAALLESSVVLGAILGGGTNVEVEKLRRFARCIGLLFQVVDDILDVTKSSEELGKTAGKDLVVDKTTYPKLLGLEKAKEFAAELNREAKQQLEGFDSRKAAPLIALADYIAYRDN 369          
BLAST of FC928834 vs. ExPASy Swiss-Prot
Match: GGPP3_ARATH (Geranylgeranyl pyrophosphate synthetase 3, chloroplastic OS=Arabidopsis thaliana GN=GGPP3 PE=2 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 5.410e-33
Identity = 78/164 (47.56%), Postives = 104/164 (63.41%), Query Frame = 1
Query:    1 DRVVRAITXXXXXXXXXXXXXXQVTDLDSEGKD---VSLSELEYIHVHKTAKLLEASXXXXXXXXXXXXXXXERVRNYARCIGLLFQVVDDILDVTKSSTVLGKTAGKDLVSDKATYPKLMGIENAKKFAEELFSQATKELAYFEVSEAAPLYHLAKYIVSRQN 483
            +R++RA+               Q+ DL SE  +   V L  LE+IH+HKTA LLEA+               E++R YARCIGLLFQVVDDILDVTKS+  LGKTAGKD+++ K TYP+L+G+E +K+ AE+L  +A ++L  F+ S+AAPL  LA YI  R N
Sbjct:  197 ERMIRAVVELARAIGTTGLVAGQMIDLASERLNPDKVGLEHLEFIHLHKTAALLEAAAVLGVIMGGGTEEEIEKLRKYARCIGLLFQVVDDILDVTKSTEELGKTAGKDVMAGKLTYPRLIGLERSKEVAEKLRREAEEQLLGFDPSKAAPLVALASYIACRHN 360          
BLAST of FC928834 vs. ExPASy Swiss-Prot
Match: GGPP4_ARATH (Geranylgeranyl pyrophosphate synthetase 4 OS=Arabidopsis thaliana GN=GGPP4 PE=2 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 9.228e-33
Identity = 78/163 (47.85%), Postives = 97/163 (59.51%), Query Frame = 1
Query:    4 RVVRAITXXXXXXXXXXXXXXQVTDLDSEG---KDVSLSELEYIHVHKTAKLLEASXXXXXXXXXXXXXXXERVRNYARCIGLLFQVVDDILDVTKSSTVLGKTAGKDLVSDKATYPKLMGIENAKKFAEELFSQATKELAYFEVSEAAPLYHLAKYIVSRQN 483
            ++VRA+               Q  DL SEG    DV L +LEYIHVHKT  LLEAS               E+VRN+ARCIGLLFQVVDDILD TKSS  LGKTAGKD V+ K TYPK++G+E +K+F E+L   A + L  F+  +  PL  L  +I +R +
Sbjct:  210 KMVRAVKELAKSIGTKGLVAGQAKDLSSEGLEQNDVGLEDLEYIHVHKTGSLLEASAVIGAVIGGGTEKEIEKVRNFARCIGLLFQVVDDILDETKSSEELGKTAGKDKVAGKLTYPKVIGVEKSKEFVEKLKRDAREHLQGFDSDKVKPLIALTNFIANRNH 372          
BLAST of FC928834 vs. ExPASy Swiss-Prot
Match: GGPP6_ARATH (Geranylgeranyl pyrophosphate synthetase 6, mitochondrial OS=Arabidopsis thaliana GN=GGPP6 PE=2 SV=2)

HSP 1 Score: 135.191 bits (339), Expect = 2.969e-31
Identity = 73/166 (43.98%), Postives = 100/166 (60.24%), Query Frame = 1
Query:    1 DRVVRAITXXXXXXXXXXXXXXQVTDLDSE-----GKDVSLSELEYIHVHKTAKLLEASXXXXXXXXXXXXXXXERVRNYARCIGLLFQVVDDILDVTKSSTVLGKTAGKDLVSDKATYPKLMGIENAKKFAEELFSQATKELAYFEVSEAAPLYHLAKYIVSRQN 483
            +RV+RA+               Q  DL  E      +D  L  LE +HVHKTA L+EA+               ER+++YARC+GL+FQV+DD+LD TKSS  LGKTAGKDL++ K TYPK+MG++NA+++A+ L  +A + L  F+  +  PL  LA YIV RQN
Sbjct:  171 ERVLRAVQEMARAVGTEGLVAGQAADLAGERMSFKNEDDELRYLELMHVHKTAVLVEAAAVVGAIMGGGSDEEIERLKSYARCVGLMFQVMDDVLDETKSSEELGKTAGKDLITGKLTYPKVMGVDNAREYAKRLNREAQEHLQGFDSDKVVPLLSLADYIVKRQN 336          
BLAST of FC928834 vs. ExPASy Swiss-Prot
Match: GGPP2_ARATH (Geranylgeranyl pyrophosphate synthetase 2 OS=Arabidopsis thaliana GN=GGPP2 PE=2 SV=2)

HSP 1 Score: 128.642 bits (322), Expect = 2.779e-29
Identity = 74/162 (45.68%), Postives = 92/162 (56.79%), Query Frame = 1
Query:    1 DRVVRAITXXXXXXXXXXXXXXQVTDLDSEGKD---VSLSELEYIHVHKTAKLLEASXXXXXXXXXXXXXXXERVRNYARCIGLLFQVVDDILDVTKSSTVLGKTAGKDLVSDKATYPKLMGIENAKKFAEELFSQATKELAYFEVSEAAPLYHLAKYIVSR 477
            +R+V A+               Q  D+ SEG D   V L  LE+IHVHKTA LLE +               E VR +ARCIGLLFQVVDDILD TKSS  LGKTAGKD ++ K TYPKL+G+E +K+F + L   A + L  F   + APL  L  +I +R
Sbjct:  213 ERMVWAVRELARSIGTRGLVAGQAMDISSEGLDLNEVGLEHLEFIHVHKTAVLLETAAVLGAIIGGGSDEEIESVRKFARCIGLLFQVVDDILDETKSSEELGKTAGKDQLAGKLTYPKLIGLEKSKEFVKRLTKDARQHLQGFSSEKVAPLVALTTFIANR 374          
BLAST of FC928834 vs. ExPASy Swiss-Prot
Match: CRTE_CYAPA (Geranylgeranyl pyrophosphate synthetase homolog OS=Cyanophora paradoxa GN=crtE PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 3.179e-25
Identity = 64/162 (39.51%), Postives = 90/162 (55.56%), Query Frame = 1
Query:    1 DRVVRAITXXXXXXXXXXXXXXQVTDLDSEGK-DVSLSELEYIHVHKTAKLLEASXXXXXXXXXXXXXXXERVRNYARCIGLLFQVVDDILDVTKSSTVLGKTAGKDLVSDKATYPKLMGIENAKKFAEELFSQATKELAYFEVSEAAPLYHLAKYIVSRQN 483
            D +V+ I               Q+ DL SEGK D +L  L +IH+HKT  LLEA+                R   YA+ IGL FQ++DD+LD+  +   LGK+ GKDL + KATYP   G+E + K AE L  +A +E+ YF+ ++A PL  +A +IV+R N
Sbjct:  140 DLIVKVIAQVAHSVTTSGLVGGQIIDLSSEGKSDTTLETLNFIHIHKTGALLEAAVLSGALLAGAKEKDMNRFLRYAQNIGLAFQIIDDVLDIISTEEKLGKSIGKDLKTQKATYPSFWGVEESIKQAELLVEEAKEEILYFD-NKAIPLIAIADFIVNRNN 300          
The following BLAST results are available for this feature:
BLAST of FC928834 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 17
Match NameE-valueIdentityDescription
GGPPS_HEVBR4.277e-3853.42Geranylgeranyl pyrophosphate synthetase, chloropla... [more]
GGPPS_SINAL1.244e-3752.76Geranylgeranyl pyrophosphate synthetase, chloropla... [more]
GGPP1_ARATH1.625e-3752.76Geranylgeranyl pyrophosphate synthetase 1, chlorop... [more]
GGPPS_CATRO1.797e-3651.23Geranylgeranyl pyrophosphate synthetase, chloropla... [more]
GGPPS_CAPAN4.426e-3552.17Geranylgeranyl pyrophosphate synthetase, chloropla... [more]
GGPP3_ARATH5.410e-3347.56Geranylgeranyl pyrophosphate synthetase 3, chlorop... [more]
GGPP4_ARATH9.228e-3347.85Geranylgeranyl pyrophosphate synthetase 4 OS=Arabi... [more]
GGPP6_ARATH2.969e-3143.98Geranylgeranyl pyrophosphate synthetase 6, mitocho... [more]
GGPP2_ARATH2.779e-2945.68Geranylgeranyl pyrophosphate synthetase 2 OS=Arabi... [more]
CRTE_CYAPA3.179e-2539.51Geranylgeranyl pyrophosphate synthetase homolog OS... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP1YK23FM1 TF Citrus clementina cDNA clone KN0AAP1YK23, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC928834 ID=FC928834; Name=FC928834; organism=Citrus clementina; type=EST; length=664bp
GACCGCGTGGTTCGAGCCATTACGGAGCTGGGTTCCGCACTTGGAGCAGA
AGGGCTCCTGAAAGGACAAGTTACTGACCTTGACAGTGAAGGAAAGGATG
TGAGTTTGAGTGAATTGGAGTACATTCATGTGCACAAAACCGCGAAGCTT
TTAGAGGCATCTGTTGTTTGCGGAGTGATAATCGGAGGAGGAAATGTGAT
TGAAATAGAAAGAGTTAGAAATTATGCAAGGTGTATAGGATTATTATTTC
AAGTGGTGGATGATATTTTAGATGTGACTAAGTCATCTACAGTGTTAGGG
AAGACGGCAGGAAAAGATTTGGTGAGTGATAAGGCCACGTATCCAAAGCT
GATGGGTATTGAGAATGCGAAGAAATTTGCAGAGGAGTTATTCTCTCAAG
CCACTAAAGAGCTTGCTTATTTTGAAGTTTCAGAGGCTGCCCCATTGTAC
CATTTAGCTAAATATATTGTTAGTAGACAGAACTAATTTACAGTTAAATC
TCAACAAATTTATAAATTAATAACTTTGATTTCACAATAGATTTGATTAG
TTTCGATTTGATTTGGGGCAAGGTGCTAAATTGATAATTTAATAAATTTG
TAAAATAATATATTATAATAGAAAATTCTCGAGAACCCTGTTACTATGTG
AACTAATAATTAAC
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