FC928979

Overview
NameFC928979
Unique NameFC928979
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length268
Libraries
Library NameType
PhII-IIIV1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9281 contig Ccv1_Contig9281:433..700. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC928979 vs. ExPASy Swiss-Prot
Match: CRK25_ARATH (Cysteine-rich receptor-like protein kinase 25 OS=Arabidopsis thaliana GN=CRK25 PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 8.075e-13
Identity = 41/89 (46.07%), Postives = 57/89 (64.04%), Query Frame = 3
Query:    3 NNFSFKNLIGKGGYAEVYKGRLINGQLVAIKRLTRGTADEIIADFLSELGIMAHVYHPNTAKLLGYGIEGGMHI-VLELSPNGRLTSLL 266
            N FS  N +G GG+ EVYKG+LI G+ VAIKRL++G+  +   +F +E+ ++A + H N AKLLGY ++G   I V E  PN  L   L
Sbjct:  345 NKFSESNKLGHGGFGEVYKGQLITGETVAIKRLSQGST-QGAEEFKNEVDVVAKLQHRNLAKLLGYCLDGEEKILVYEFVPNKSLDYFL 432          
BLAST of FC928979 vs. ExPASy Swiss-Prot
Match: Y1534_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At1g53420 OS=Arabidopsis thaliana GN=At1g53420 PE=2 SV=2)

HSP 1 Score: 70.8626 bits (172), Expect = 2.350e-12
Identity = 36/89 (40.45%), Postives = 58/89 (65.17%), Query Frame = 3
Query:    3 NNFSFKNLIGKGGYAEVYKGRLINGQLVAIKRLTRGTADEIIADFLSELGIMAHVYHPNTAKLLGYGIEGG-MHIVLELSPNGRLTSLL 266
            NNF   N IG+GG+  VYKG+L +G ++A+K+L+ G + +   +FL+E+G+++ ++HPN  KL G  +EGG + +V E   N  L   L
Sbjct:  622 NNFDSANRIGEGGFGPVYKGKLFDGTIIAVKQLSTG-SKQGNREFLNEIGMISALHHPNLVKLYGCCVEGGQLLLVYEFVENNSLARAL 709          
BLAST of FC928979 vs. ExPASy Swiss-Prot
Match: CRK39_ARATH (Putative cysteine-rich receptor-like protein kinase 39 OS=Arabidopsis thaliana GN=CRK39 PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 3.069e-12
Identity = 38/85 (44.71%), Postives = 54/85 (63.53%), Query Frame = 3
Query:    3 NNFSFKNLIGKGGYAEVYKGRLINGQLVAIKRLTRGTADEIIADFLSELGIMAHVYHPNTAKLLGYGIEGGMHI-VLELSPNGRL 254
            + FS +N +G+GG+  VYKG L+NGQ VA+KRLT+G+    I +F +E+ ++  + H N  KLLG+  EG   I V E  PN  L
Sbjct:  351 DEFSSENTLGQGGFGTVYKGTLLNGQEVAVKRLTKGSGQGDI-EFKNEVSLLTRLQHRNLVKLLGFCNEGDEQILVYEFVPNSSL 434          
BLAST of FC928979 vs. ExPASy Swiss-Prot
Match: CRK38_ARATH (Cysteine-rich receptor-like protein kinase 38 OS=Arabidopsis thaliana GN=CRK38 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 5.234e-12
Identity = 38/85 (44.71%), Postives = 55/85 (64.71%), Query Frame = 3
Query:    3 NNFSFKNLIGKGGYAEVYKGRLINGQLVAIKRLTRGTADEIIADFLSELGIMAHVYHPNTAKLLGYGIEGGMHI-VLELSPNGRL 254
            ++FSF+N IG+GG+  VYKG+L  G+ +A+KRLTRG+    I +F +E+ ++  + H N  KLLG+  EG   I V E  PN  L
Sbjct:  337 DDFSFENKIGQGGFGSVYKGKLPGGEEIAVKRLTRGSGQGEI-EFRNEVLLLTRLQHRNLVKLLGFCNEGDEEILVYEFVPNSSL 420          
BLAST of FC928979 vs. ExPASy Swiss-Prot
Match: Y5977_ARATH (Probable leucine-rich repeat receptor-like protein kinase At5g49770 OS=Arabidopsis thaliana GN=At5g49770 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 8.928e-12
Identity = 37/85 (43.53%), Postives = 53/85 (62.35%), Query Frame = 3
Query:    3 NNFSFKNLIGKGGYAEVYKGRLINGQLVAIKRLTRGTADEIIADFLSELGIMAHVYHPNTAKLLGYGI-EGGMHIVLELSPNGRL 254
            NNFS  N +G GGY +VYKG L NGQ++AIKR  +G+      +F +E+ +++ V+H N  KLLG+   +    +V E  PNG L
Sbjct:  632 NNFSDANDVGGGGYGQVYKGTLPNGQVIAIKRAQQGSMQGAF-EFKTEIELLSRVHHKNVVKLLGFCFDQKEQMLVYEYIPNGSL 715          
BLAST of FC928979 vs. ExPASy Swiss-Prot
Match: CRK30_ARATH (Putative cysteine-rich receptor-like protein kinase 30 OS=Arabidopsis thaliana GN=CRK30 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 1.989e-11
Identity = 39/89 (43.82%), Postives = 56/89 (62.92%), Query Frame = 3
Query:    3 NNFSFKNLIGKGGYAEVYKGRLINGQLVAIKRLTRGTADEIIADFLSELGIMAHVYHPNTAKLLGYGIEGGMHI-VLELSPNGRLTSLL 266
            +NF   N IG+GG+ EVYKG L NG  VA+KRL+R T+D+   +F +E+ ++A + H N  +LLG+ ++G   I V E  PN  L   L
Sbjct:  344 SNFLASNKIGQGGFGEVYKGTLSNGTEVAVKRLSR-TSDQGELEFKNEVLLVAKLQHRNLVRLLGFALQGEEKILVFEFVPNKSLDYFL 431          
BLAST of FC928979 vs. ExPASy Swiss-Prot
Match: CRK8_ARATH (Cysteine-rich receptor-like protein kinase 8 OS=Arabidopsis thaliana GN=CRK8 PE=2 SV=2)

HSP 1 Score: 67.0106 bits (162), Expect = 3.393e-11
Identity = 37/89 (41.57%), Postives = 57/89 (64.04%), Query Frame = 3
Query:    3 NNFSFKNLIGKGGYAEVYKGRLINGQLVAIKRLTRGTADEIIADFLSELGIMAHVYHPNTAKLLGYGIEGGMHI-VLELSPNGRLTSLL 266
            N+F+  N IG+GG+ EVYKG   NG+ VA+KRL++ +  +  A+F +E+ ++A + H N  +LLG+ ++G   I V E  PN  L  LL
Sbjct:  351 NDFAESNKIGRGGFGEVYKGTFSNGKEVAVKRLSKNSR-QGEAEFKTEVVVVAKLQHRNLVRLLGFSLQGEERILVYEYMPNKSLDCLL 438          
BLAST of FC928979 vs. ExPASy Swiss-Prot
Match: CRK6_ARATH (Cysteine-rich receptor-like protein kinase 6 OS=Arabidopsis thaliana GN=CRK6 PE=1 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 3.393e-11
Identity = 37/89 (41.57%), Postives = 57/89 (64.04%), Query Frame = 3
Query:    3 NNFSFKNLIGKGGYAEVYKGRLINGQLVAIKRLTRGTADEIIADFLSELGIMAHVYHPNTAKLLGYGIEGGMHI-VLELSPNGRLTSLL 266
            N+F+  N IG+GG+ EVYKG   NG+ VA+KRL++ +  +  A+F +E+ ++A + H N  +LLG+ ++G   I V E  PN  L  LL
Sbjct:  349 NDFAESNKIGRGGFGEVYKGTFSNGKEVAVKRLSKNSR-QGEAEFKTEVVVVAKLQHRNLVRLLGFSLQGEERILVYEYMPNKSLDCLL 436          
BLAST of FC928979 vs. ExPASy Swiss-Prot
Match: CRK40_ARATH (Cysteine-rich receptor-like protein kinase 40 OS=Arabidopsis thaliana GN=CRK40 PE=1 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 4.431e-11
Identity = 36/85 (42.35%), Postives = 53/85 (62.35%), Query Frame = 3
Query:    3 NNFSFKNLIGKGGYAEVYKGRLINGQLVAIKRLTRGTADEIIADFLSELGIMAHVYHPNTAKLLGYGIEGGMHI-VLELSPNGRL 254
            ++FS +N +G+GG+  VYKG   NGQ VA+KRLT+G+    + +F +E+ ++  + H N  KLLG+  EG   I V E  PN  L
Sbjct:  346 DDFSSENTLGQGGFGTVYKGTFPNGQEVAVKRLTKGSGQGDM-EFKNEVSLLTRLQHKNLVKLLGFCNEGDEEILVYEFVPNSSL 429          
BLAST of FC928979 vs. ExPASy Swiss-Prot
Match: CRK12_ARATH (Putative cysteine-rich receptor-like protein kinase 12 OS=Arabidopsis thaliana GN=CRK12 PE=2 SV=2)

HSP 1 Score: 66.6254 bits (161), Expect = 4.431e-11
Identity = 38/88 (43.18%), Postives = 56/88 (63.64%), Query Frame = 3
Query:    6 NFSFKNLIGKGGYAEVYKGRLINGQLVAIKRLTRGTADEIIADFLSELGIMAHVYHPNTAKLLGYGIEGGMHI-VLELSPNGRLTSLL 266
            NF+  N +G+GG+ EVYKG L+NG  VA+KRL++ T+++   +F +E+ ++A + H N  KLLGY +E    I V E  PN  L   L
Sbjct:  366 NFAKTNKLGQGGFGEVYKGTLVNGTEVAVKRLSK-TSEQGAQEFKNEVVLVAKLQHRNLVKLLGYCLEPEEKILVYEFVPNKSLDYFL 452          
The following BLAST results are available for this feature:
BLAST of FC928979 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 13
Match NameE-valueIdentityDescription
CRK25_ARATH8.075e-1346.07Cysteine-rich receptor-like protein kinase 25 OS=A... [more]
Y1534_ARATH2.350e-1240.45Probable LRR receptor-like serine/threonine-protei... [more]
CRK39_ARATH3.069e-1244.71Putative cysteine-rich receptor-like protein kinas... [more]
CRK38_ARATH5.234e-1244.71Cysteine-rich receptor-like protein kinase 38 OS=A... [more]
Y5977_ARATH8.928e-1243.53Probable leucine-rich repeat receptor-like protein... [more]
CRK30_ARATH1.989e-1143.82Putative cysteine-rich receptor-like protein kinas... [more]
CRK8_ARATH3.393e-1141.57Cysteine-rich receptor-like protein kinase 8 OS=Ar... [more]
CRK6_ARATH3.393e-1141.57Cysteine-rich receptor-like protein kinase 6 OS=Ar... [more]
CRK40_ARATH4.431e-1142.35Cysteine-rich receptor-like protein kinase 40 OS=A... [more]
CRK12_ARATH4.431e-1143.18Putative cysteine-rich receptor-like protein kinas... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAH3BE03RM1 PhII-IIIV1 Citrus clementina cDNA clone KN0AAH3BE03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC928979 ID=FC928979; Name=FC928979; organism=Citrus clementina; type=EST; length=268bp
CCAACAATTTCAGCTTCAAAAATTTGATTGGAAAGGGAGGTTATGCTGAA
GTTTACAAAGGGCGTTTGATAAATGGGCAGCTTGTGGCAATCAAACGGCT
AACAAGAGGTACAGCAGATGAGATTATAGCGGACTTTTTATCGGAGCTTG
GGATTATGGCTCATGTCTATCATCCTAATACTGCTAAGTTATTAGGATAT
GGGATTGAAGGAGGCATGCACATTGTTCTTGAATTGTCTCCTAATGGACG
CTTAACTTCTCTCCTTTA
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