FC929149

Overview
NameFC929149
Unique NameFC929149
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length795
Libraries
Library NameType
PhII-IIIV1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig11159 contig Ccv1_Contig11159:564..1358. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of FC929149 vs. ExPASy Swiss-Prot
Match: ESCA_ARATH (Putative DNA-binding protein ESCAROLA OS=Arabidopsis thaliana GN=ESC PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.492e-12
Identity = 47/122 (38.52%), Postives = 66/122 (54.10%), Query Frame = 1 
Query:  457 RPKRSPASDSQAL-KRSRGRPPGTGRKQQLATLGEWMNSSAGIAFAPHVISIGVGEDIVAKMLSFSQQRPRVVCILSGRGTVSSVTLRQPAT---------SVPTVTYEGRFKILCLSGSFL 792
            RP   P + S A  KR RGRPPG+  K +   +   +   +  A   HV+ +  G DIV  + +++++R R V +L G GTVS+VTLRQP T             VT  GRF+IL L+G+ L
Sbjct:   72 RPDSDPNTSSSAPGKRPRGRPPGSKNKAKPPII---VTRDSPNALRSHVLEVSPGADIVESVSTYARRRGRGVSVLGGNGTVSNVTLRQPVTPGNGGGVSGGGGVVTLHGRFEILSLTGTVL 190
The following BLAST results are available for this feature:
BLAST of FC929149 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
ESCA_ARATH2.492e-1238.52Putative DNA-binding protein ESCAROLA OS=Arabidops... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAH3CF05RM1 PhII-IIIV1 Citrus clementina cDNA clone KN0AAH3CF05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929149 ID=FC929149; Name=FC929149; organism=Citrus clementina; type=EST; length=795bp
GTGTTAGGGAGATCAGGATCTTGTGTGTATTTAGTTTAAGATTTTAGCTT
AAGTGGCTTAATAGACTCATTTTCTAGCTACCCAAAAAGAAAAAAAATTC
ATTTTCTACTTAGTAAATGCATGGACGGAAGAGAAGCTATGGTTGCATCA
GGGGGTGTCTCTGGTCCCTATTACATTCAACAACATAGAGGAGCATTCAG
TGGTTCTCATTCAGCAACACAATCTGGTTTAATGCAAACCCCACCTGGGT
TTAGATCCTCGTCAAATCTTAACATTCCAACTCAACCAAATGTGGGATCG
ACATTTGCAGTTGAGCCCAAACATGTCAATTTTGGCCATAACATGAGTGT
GCCATCCGGGGTGCCACTAAGTGATCCAGTGAAGAAGAAGAGAGGTAGAC
CCCGCAAATATGCCCCTGATGGGCAGGTTTCCTTGGGGCTTTCGCCATTG
CCAGCCAGGCCAAAGCGTTCTCCGGCATCTGATTCGCAGGCCTTGAAACG
GAGTAGAGGGCGGCCTCCTGGGACAGGCAGGAAGCAGCAGTTGGCTACTC
TTGGTGAATGGATGAATAGTTCAGCTGGAATTGCTTTTGCACCGCATGTG
ATCTCCATTGGAGTTGGAGAGGACATTGTGGCTAAAATGTTGTCATTTTC
ACAACAGAGGCCAAGGGTTGTGTGCATCTTGTCAGGCCGTGGTACAGTTT
CTTCAGTAACACTCCGTCAGCCTGCAACTTCAGTGCCCACCGTCACCTAT
GAGGGCCGTTTCAAGATATTATGCCTGTCTGGTTCATTCTTACTT
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