FC929391

Overview
NameFC929391
Unique NameFC929391
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length550
Libraries
Library NameType
PhII-IIIV1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10775 contig Ccv1_Contig10775:292..841. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC929391 vs. ExPASy Swiss-Prot
Match: CYPH_CATRO (Peptidyl-prolyl cis-trans isomerase OS=Catharanthus roseus GN=PCKR1 PE=2 SV=1)

HSP 1 Score: 176.407 bits (446), Expect = 7.953e-44
Identity = 83/94 (88.30%), Postives = 88/94 (93.62%), Query Frame = 1
Query:    1 GTGGESVYGS*FADENFVKKHTGPGILSMANAGPGTNGSHFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQLS 282
            GTGGES+YG+ FADENF+KKHTGPGILSMANAGP TNGS FF+CTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRT K VV+ DCGQLS
Sbjct:   79 GTGGESIYGAKFADENFIKKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTAKKVVVEDCGQLS 172          
BLAST of FC929391 vs. ExPASy Swiss-Prot
Match: CYPH_ALLCE (Peptidyl-prolyl cis-trans isomerase OS=Allium cepa GN=CYP PE=2 SV=1)

HSP 1 Score: 171.785 bits (434), Expect = 1.959e-42
Identity = 79/94 (84.04%), Postives = 86/94 (91.49%), Query Frame = 1
Query:    1 GTGGESVYGS*FADENFVKKHTGPGILSMANAGPGTNGSHFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQLS 282
            GTGGES+YG+ F DENF+KKHTGPG+LSMANAGPGTNGS FF+CT KT WLDGKHVVFGQVVEGMDVV+AIEKVGS SG+T KPV IADCGQLS
Sbjct:   57 GTGGESIYGAKFKDENFIKKHTGPGVLSMANAGPGTNGSQFFICTEKTAWLDGKHVVFGQVVEGMDVVRAIEKVGSQSGQTKKPVKIADCGQLS 150          
BLAST of FC929391 vs. ExPASy Swiss-Prot
Match: CYPH_SOLLC (Peptidyl-prolyl cis-trans isomerase OS=Solanum lycopersicum GN=CYP PE=2 SV=1)

HSP 1 Score: 171.014 bits (432), Expect = 3.341e-42
Identity = 80/93 (86.02%), Postives = 86/93 (92.47%), Query Frame = 1
Query:    1 GTGGESVYGS*FADENFVKKHTGPGILSMANAGPGTNGSHFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQL 279
            GTGGES+YG+ F DENFVKKHTGPGILSMANAGPGTNGS FF+CTAKTEWL+GKHVVFGQVVEGMDV+K  E VGSSSGR +KPVVIADCGQL
Sbjct:   79 GTGGESIYGAKFNDENFVKKHTGPGILSMANAGPGTNGSQFFICTAKTEWLNGKHVVFGQVVEGMDVIKKAEAVGSSSGRCSKPVVIADCGQL 171          
BLAST of FC929391 vs. ExPASy Swiss-Prot
Match: CP18C_ARATH (Peptidyl-prolyl cis-trans isomerase CYP18-3 OS=Arabidopsis thaliana GN=CYP18-3 PE=1 SV=1)

HSP 1 Score: 167.933 bits (424), Expect = 2.828e-41
Identity = 78/94 (82.98%), Postives = 85/94 (90.43%), Query Frame = 1
Query:    1 GTGGESVYGS*FADENFVKKHTGPGILSMANAGPGTNGSHFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQLS 282
            GTGGES+YGS F DENF +KHTGPGILSMANAG  TNGS FF+CT KT+WLDGKHVVFGQVVEG+DVVKAIEKVGSSSG+  KPVV+ADCGQLS
Sbjct:   79 GTGGESIYGSKFEDENFERKHTGPGILSMANAGANTNGSQFFICTVKTDWLDGKHVVFGQVVEGLDVVKAIEKVGSSSGKPTKPVVVADCGQLS 172          
BLAST of FC929391 vs. ExPASy Swiss-Prot
Match: CP19A_ARATH (Peptidyl-prolyl cis-trans isomerase CYP19-1 OS=Arabidopsis thaliana GN=CYP19-1 PE=1 SV=1)

HSP 1 Score: 166.392 bits (420), Expect = 8.230e-41
Identity = 77/94 (81.91%), Postives = 85/94 (90.43%), Query Frame = 1
Query:    1 GTGGESVYGS*FADENFVKKHTGPGILSMANAGPGTNGSHFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQLS 282
            GTGGES+YGS F DENF+KKHTGPGILSMANAG  TNGS FF+CT KT WLDGKHVVFGQVVEG++VV+ IEKVGS SGRT+KPVVIADCGQ+S
Sbjct:   80 GTGGESIYGSKFKDENFIKKHTGPGILSMANAGANTNGSQFFICTEKTSWLDGKHVVFGQVVEGLNVVRDIEKVGSDSGRTSKPVVIADCGQIS 173          
BLAST of FC929391 vs. ExPASy Swiss-Prot
Match: CP19B_ARATH (Peptidyl-prolyl cis-trans isomerase CYP19-2 OS=Arabidopsis thaliana GN=CYP19-2 PE=1 SV=1)

HSP 1 Score: 164.851 bits (416), Expect = 2.394e-40
Identity = 75/94 (79.79%), Postives = 85/94 (90.43%), Query Frame = 1
Query:    1 GTGGESVYGS*FADENFVKKHTGPGILSMANAGPGTNGSHFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQLS 282
            GTGGES+YG+ F DENF +KHTGPGILSMANAG  TNGS FF+CT KT+WLDGKHVVFGQVVEG+DVVKAIEK+GSSSG+  KPVVIADCG++S
Sbjct:   80 GTGGESIYGAKFEDENFERKHTGPGILSMANAGANTNGSQFFICTVKTDWLDGKHVVFGQVVEGLDVVKAIEKIGSSSGKPTKPVVIADCGEIS 173          
BLAST of FC929391 vs. ExPASy Swiss-Prot
Match: CYPH_LUPLU (Peptidyl-prolyl cis-trans isomerase OS=Lupinus luteus PE=2 SV=1)

HSP 1 Score: 164.081 bits (414), Expect = 4.084e-40
Identity = 74/94 (78.72%), Postives = 86/94 (91.49%), Query Frame = 1
Query:    1 GTGGESVYGS*FADENFVKKHTGPGILSMANAGPGTNGSHFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQLS 282
            GTG ES+YG+ FADENF+K+HTGPGILSMANAG GTNGS FF+CT KTEWLDGKHVVFG+V+EGM+VV+ IEKVGS SG+T++PV IADCGQLS
Sbjct:   79 GTGAESIYGAKFADENFIKRHTGPGILSMANAGAGTNGSQFFICTEKTEWLDGKHVVFGKVIEGMNVVRDIEKVGSGSGKTSRPVTIADCGQLS 172          
BLAST of FC929391 vs. ExPASy Swiss-Prot
Match: CP18D_ARATH (Peptidyl-prolyl cis-trans isomerase CYP18-4 OS=Arabidopsis thaliana GN=CYP18-4 PE=1 SV=1)

HSP 1 Score: 160.614 bits (405), Expect = 4.516e-39
Identity = 74/94 (78.72%), Postives = 83/94 (88.30%), Query Frame = 1
Query:    1 GTGGESVYGS*FADENFVKKHTGPGILSMANAGPGTNGSHFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQLS 282
            GTGGES+YG+ F DENF+KKHTG GILSMAN+GP TNGS FF+CT KT WLDGKHVVFGQVV+G+DVVKAIEKVGS SG+T+K V I DCGQLS
Sbjct:   79 GTGGESIYGAKFKDENFIKKHTGAGILSMANSGPNTNGSQFFICTDKTSWLDGKHVVFGQVVKGLDVVKAIEKVGSDSGKTSKVVTITDCGQLS 172          
BLAST of FC929391 vs. ExPASy Swiss-Prot
Match: CYPH_BRANA (Peptidyl-prolyl cis-trans isomerase OS=Brassica napus GN=CYP PE=2 SV=2)

HSP 1 Score: 158.688 bits (400), Expect = 1.716e-38
Identity = 75/93 (80.65%), Postives = 79/93 (84.95%), Query Frame = 1
Query:    1 GTGGESVYGS*FADENFVKKHTGPGILSMANAGPGTNGSHFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQL 279
            GTGGES+YG  F DENFVKKHTGPGILSM NAG  TNGS FF+CT KT WLDGKHVVFGQVVEGMDVV+ IEKVGS SGRT+K VV  DCGQL
Sbjct:   79 GTGGESIYGMKFKDENFVKKHTGPGILSMRNAGSNTNGSQFFICTEKTSWLDGKHVVFGQVVEGMDVVRDIEKVGSDSGRTSKKVVTCDCGQL 171          
BLAST of FC929391 vs. ExPASy Swiss-Prot
Match: PPIF_HUMAN (Peptidyl-prolyl cis-trans isomerase, mitochondrial OS=Homo sapiens GN=PPIF PE=1 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 2.478e-37
Identity = 71/94 (75.53%), Postives = 78/94 (82.98%), Query Frame = 1
Query:    1 GTGGESVYGS*FADENFVKKHTGPGILSMANAGPGTNGSHFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQLS 282
            GTGG+S+YGS F DENF  KH GPG+LSMANAGP TNGS FF+CT KT+WLDGKHVVFG V EGMDVVK IE  GS SGRT+K +VI DCGQLS
Sbjct:  114 GTGGKSIYGSRFPDENFTLKHVGPGVLSMANAGPNTNGSQFFICTIKTDWLDGKHVVFGHVKEGMDVVKKIESFGSKSGRTSKKIVITDCGQLS 207          
The following BLAST results are available for this feature:
BLAST of FC929391 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 193
Match NameE-valueIdentityDescription
CYPH_CATRO7.953e-4488.30Peptidyl-prolyl cis-trans isomerase OS=Catharanthu... [more]
CYPH_ALLCE1.959e-4284.04Peptidyl-prolyl cis-trans isomerase OS=Allium cepa... [more]
CYPH_SOLLC3.341e-4286.02Peptidyl-prolyl cis-trans isomerase OS=Solanum lyc... [more]
CP18C_ARATH2.828e-4182.98Peptidyl-prolyl cis-trans isomerase CYP18-3 OS=Ara... [more]
CP19A_ARATH8.230e-4181.91Peptidyl-prolyl cis-trans isomerase CYP19-1 OS=Ara... [more]
CP19B_ARATH2.394e-4079.79Peptidyl-prolyl cis-trans isomerase CYP19-2 OS=Ara... [more]
CYPH_LUPLU4.084e-4078.72Peptidyl-prolyl cis-trans isomerase OS=Lupinus lut... [more]
CP18D_ARATH4.516e-3978.72Peptidyl-prolyl cis-trans isomerase CYP18-4 OS=Ara... [more]
CYPH_BRANA1.716e-3880.65Peptidyl-prolyl cis-trans isomerase OS=Brassica na... [more]
PPIF_HUMAN2.478e-3775.53Peptidyl-prolyl cis-trans isomerase, mitochondrial... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAH2BE11RM1 PhII-IIIV1 Citrus clementina cDNA clone KN0AAH2BE11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929391 ID=FC929391; Name=FC929391; organism=Citrus clementina; type=EST; length=550bp
GGAACCGGAGGCGAATCAGTCTACGGCTCATAATTCGCCGATGAGAACTT
CGTGAAGAAGCACACCGGCCCCGGAATCCTCTCCATGGCGAATGCCGGAC
CCGGAACCAACGGATCTCATTTCTTCGTCTGTACGGCCAAGACCGAGTGG
CTCGATGGGAAGCACGTTGTGTTCGGTCAAGTCGTCGAAGGAATGGACGT
CGTCAAGGCCATCGAGAAAGTGGGGTCCAGCTCCGGAAGGACCAACAAGC
CCGTCGTGATCGCTGATTGCGGTCAATTGTCTTATATTTGATCATGATAA
TGATCGCCATCATCACGAGCCGTCTGATCGCGATCGTGATGGTGATTATG
TTATCTATTATTATGTGGCCGTGTCTGTAGGACTTTTAATCTTTATCTAA
TTTTCCTGCTATGTTACTTGTTCGGGTTGGATCGGGTCTCCGGTGGTGGT
TCTTGATGAACTGTTTTTTATGTCTTTCTATGAGCTGCCTTTTTAAATAA
GATAGGGCTTGTCTTGTTATATTACATAAAAAAAAACAAAAAAGAAGAGA
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