FC929885

Overview
NameFC929885
Unique NameFC929885
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length732
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig11415 contig Ccv1_Contig11415:138..869. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC929885 vs. ExPASy Swiss-Prot
Match: PSD7_ARATH (Probable 26S proteasome non-ATPase regulatory subunit 7 OS=Arabidopsis thaliana GN=RPN8 PE=2 SV=1)

HSP 1 Score: 434.876 bits (1117), Expect = 2.156e-121
Identity = 216/243 (88.89%), Postives = 227/243 (93.42%), Query Frame = 2
Query:    2 EKVIVHPLVLLSIVDNYNRVAKDTRKRVVGVLLGSSFKGTVDVSNSYAVPFEEDDKDPGIWFLDHNYHESMYSMFKRINAKEHVVGWYSTGPKLRENDLDIHQLFHNYVPNPVLVIIDVQPKELGIPTKAYYDVEEVKENATQKSQKVFVHVPSEIAAHEVEEIGVEHLLRDVKDTTISTLANEVTGKLTALKGLDARLREIRGYLDLVIDEKLPLNHEILYHLQDVFNLLPNLNVAEXNQAF 730
            EKV+VHPLVLLSIVD+YNRVAKD+ KRVVGVLLGSS +G VDV+NSYAVPFEEDDKDP IWFLDHNYHESM+ MFKRINAKEHVVGWYSTGPKLRENDLD+H LF+ YVPNPVLVIIDVQPKELGIPTKAYY VEEVKENATQKSQKVFVHV +EIAAHEVEEIGVEHLLRDVKDTTISTLA EVT KLTALKGLDARLREIR YLDLVI+ KLPLNHEILYHLQDVFNLLPNLNV E  +AF
Sbjct:   15 EKVVVHPLVLLSIVDHYNRVAKDSSKRVVGVLLGSSSRGVVDVTNSYAVPFEEDDKDPSIWFLDHNYHESMFHMFKRINAKEHVVGWYSTGPKLRENDLDVHALFNGYVPNPVLVIIDVQPKELGIPTKAYYAVEEVKENATQKSQKVFVHVSTEIAAHEVEEIGVEHLLRDVKDTTISTLATEVTAKLTALKGLDARLREIRSYLDLVIEGKLPLNHEILYHLQDVFNLLPNLNVNELVKAF 257          
BLAST of FC929885 vs. ExPASy Swiss-Prot
Match: PSD7_BOVIN (26S proteasome non-ATPase regulatory subunit 7 OS=Bos taurus GN=PSMD7 PE=2 SV=1)

HSP 1 Score: 310.071 bits (793), Expect = 8.009e-84
Identity = 148/244 (60.66%), Postives = 195/244 (79.92%), Query Frame = 2
Query:    2 EKVIVHPLVLLSIVDNYNRVAK-DTRKRVVGVLLGSSFKGTVDVSNSYAVPFEEDDKDPGIWFLDHNYHESMYSMFKRINAKEHVVGWYSTGPKLRENDLDIHQLFHNYVPNPVLVIIDVQPKELGIPTKAYYDVEEVKENATQKSQKVFVHVPSEIAAHEVEEIGVEHLLRDVKDTTISTLANEVTGKLTALKGLDARLREIRGYLDLVIDEKLPLNHEILYHLQDVFNLLPNLNVAEXNQAF 730
            +KV+VHPLVLLS+VD++NR+ K   +KRVVGVLLGS  K  +DVSNS+AVPF+EDDKD  +WFLDH+Y E+MY MFK++NA+E +VGWY TGPKL +ND+ I++L   Y PN VLVIIDV+PK+LG+PT+AY  VEEV ++ T  S K F HV SEI A E EE+GVEHLLRD+KDTT+ TL+  +T ++  LKGL+++L +IRGYL+ V   KLP+NH+I+Y LQDVFNLLP++++ E  +AF
Sbjct:    7 QKVVVHPLVLLSVVDHFNRIGKVGNQKRVVGVLLGSWQKKVLDVSNSFAVPFDEDDKDDSVWFLDHDYLENMYGMFKKVNARERIVGWYHTGPKLHKNDIAINELMKRYCPNSVLVIIDVKPKDLGLPTEAYISVEEVHDDGTPTS-KTFEHVTSEIGAEEAEEVGVEHLLRDIKDTTVGTLSQRITNQVHGLKGLNSKLLDIRGYLEKVATGKLPINHQIIYQLQDVFNLLPDVSLQEFVKAF 249          
BLAST of FC929885 vs. ExPASy Swiss-Prot
Match: PSD7_HUMAN (26S proteasome non-ATPase regulatory subunit 7 OS=Homo sapiens GN=PSMD7 PE=1 SV=2)

HSP 1 Score: 307.76 bits (787), Expect = 3.975e-83
Identity = 147/244 (60.25%), Postives = 194/244 (79.51%), Query Frame = 2
Query:    2 EKVIVHPLVLLSIVDNYNRVAK-DTRKRVVGVLLGSSFKGTVDVSNSYAVPFEEDDKDPGIWFLDHNYHESMYSMFKRINAKEHVVGWYSTGPKLRENDLDIHQLFHNYVPNPVLVIIDVQPKELGIPTKAYYDVEEVKENATQKSQKVFVHVPSEIAAHEVEEIGVEHLLRDVKDTTISTLANEVTGKLTALKGLDARLREIRGYLDLVIDEKLPLNHEILYHLQDVFNLLPNLNVAEXNQAF 730
            +KV+VHPLVLLS+VD++NR+ K   +KRVVGVLLGS  K  +DVSNS+AVPF+EDDKD  +WFLDH+Y E+MY MFK++NA+E +VGWY TGPKL +ND+ I++L   Y PN VLVIIDV+PK+LG+PT+AY  VEEV ++ T  S K F HV SEI A E EE+GVEHLLRD+KDTT+ TL+  +T ++  LKGL+++L +IR YL+ V   KLP+NH+I+Y LQDVFNLLP++++ E  +AF
Sbjct:    7 QKVVVHPLVLLSVVDHFNRIGKVGNQKRVVGVLLGSWQKKVLDVSNSFAVPFDEDDKDDSVWFLDHDYLENMYGMFKKVNARERIVGWYHTGPKLHKNDIAINELMKRYCPNSVLVIIDVKPKDLGLPTEAYISVEEVHDDGTPTS-KTFEHVTSEIGAEEAEEVGVEHLLRDIKDTTVGTLSQRITNQVHGLKGLNSKLLDIRSYLEKVATGKLPINHQIIYQLQDVFNLLPDVSLQEFVKAF 249          
BLAST of FC929885 vs. ExPASy Swiss-Prot
Match: PSD7_MOUSE (26S proteasome non-ATPase regulatory subunit 7 OS=Mus musculus GN=Psmd7 PE=1 SV=2)

HSP 1 Score: 307.375 bits (786), Expect = 5.191e-83
Identity = 147/244 (60.25%), Postives = 193/244 (79.10%), Query Frame = 2
Query:    2 EKVIVHPLVLLSIVDNYNRVAK-DTRKRVVGVLLGSSFKGTVDVSNSYAVPFEEDDKDPGIWFLDHNYHESMYSMFKRINAKEHVVGWYSTGPKLRENDLDIHQLFHNYVPNPVLVIIDVQPKELGIPTKAYYDVEEVKENATQKSQKVFVHVPSEIAAHEVEEIGVEHLLRDVKDTTISTLANEVTGKLTALKGLDARLREIRGYLDLVIDEKLPLNHEILYHLQDVFNLLPNLNVAEXNQAF 730
            +KV+VHPLVLLS+VD++NR+ K   +KRVVGVLLGS  K  +DVSNS+AVPF+EDDKD  +WFLDH+Y E+MY MFK++NA+E +VGWY TGPKL +ND+ I++L   Y PN VLVIIDV+PK+LG+PT+AY  VEEV ++ T  S K F HV SEI A E EE+GVEHLLRD+KDTT+ TL+  +T ++  LKGL+++L +IR YL+ V   KLP+NH+I+Y LQDVFNLLP+ ++ E  +AF
Sbjct:    7 QKVVVHPLVLLSVVDHFNRIGKVGNQKRVVGVLLGSWQKKVLDVSNSFAVPFDEDDKDDSVWFLDHDYLENMYGMFKKVNARERIVGWYHTGPKLHKNDIAINELMKRYCPNSVLVIIDVKPKDLGLPTEAYISVEEVHDDGTPTS-KTFEHVTSEIGAEEAEEVGVEHLLRDIKDTTVGTLSQRITNQVHGLKGLNSKLLDIRSYLEKVASGKLPINHQIIYQLQDVFNLLPDASLQEFVKAF 249          
BLAST of FC929885 vs. ExPASy Swiss-Prot
Match: PSD7_DICDI (26S proteasome non-ATPase regulatory subunit 7 OS=Dictyostelium discoideum GN=psmD7 PE=3 SV=1)

HSP 1 Score: 305.834 bits (782), Expect = 1.510e-82
Identity = 146/240 (60.83%), Postives = 190/240 (79.17%), Query Frame = 2
Query:   11 IVHPLVLLSIVDNYNRVAKDTRKRVVGVLLGSSFKGTVDVSNSYAVPFEEDDKDPGIWFLDHNYHESMYSMFKRINAKEHVVGWYSTGPKLRENDLDIHQLFHNYVPNPVLVIIDVQPKELGIPTKAYYDVEEVKENATQKSQKVFVHVPSEIAAHEVEEIGVEHLLRDVKDTTISTLANEVTGKLTALKGLDARLREIRGYLDLVIDEKLPLNHEILYHLQDVFNLLPNLNVAEXNQAF 730
            IVHP VLLS+VD+YNRVAKDT KRVVG LLGS+ KG VDVSN Y +PFEED+ +P IWFLDHN+HE+M++MFK+INA+E+VVGWYSTGPK+R  D DI++LF  Y PNPV+VIIDV PKELGIPTK+Y  VEE+ ++ ++ + + F H+PS I A E EEI +EHLLRDVKD++IS+L  ++T K  +LK L   L+E++ YL LV D  LP NH+I+ ++QD+ NL PNLN  E +++F
Sbjct:    9 IVHPTVLLSVVDHYNRVAKDTNKRVVGALLGSNNKGVVDVSNCYGLPFEEDEANPNIWFLDHNFHENMFAMFKKINARENVVGWYSTGPKIRPADQDINELFRRYTPNPVMVIIDVAPKELGIPTKSYVTVEEINKDTSESTMR-FQHIPSSIDAVEAEEICIEHLLRDVKDSSISSLTTQITDKKISLKHLLTNLQEMQHYLKLVCDGTLPPNHQIIGYIQDIINLSPNLNANEISKSF 247          
BLAST of FC929885 vs. ExPASy Swiss-Prot
Match: PSD7_DROME (26S proteasome non-ATPase regulatory subunit 7 OS=Drosophila melanogaster GN=Mov34 PE=1 SV=6)

HSP 1 Score: 302.368 bits (773), Expect = 1.670e-81
Identity = 145/235 (61.70%), Postives = 189/235 (80.43%), Query Frame = 2
Query:    5 KVIVHPLVLLSIVDNYNRVAK-DTRKRVVGVLLGS-SFKGTVDVSNSYAVPFEEDDKDPGIWFLDHNYHESMYSMFKRINAKEHVVGWYSTGPKLRENDLDIHQLFHNYVPNPVLVIIDVQPKELGIPTKAYYDVEEVKENATQKSQKVFVHVPSEIAAHEVEEIGVEHLLRDVKDTTISTLANEVTGKLTALKGLDARLREIRGYLDLVIDEKLPLNHEILYHLQDVFNLLPNL 703
            KVIVHPLVLLS+VD++NR+ K   +KRVVGVLLG    KG +DVSNS+AVPF+EDDKD  +WFLDH+Y E+MY MFK++NA+E VVGWY TGPKL +ND+ I++L   Y PN VLVIID +PK+LG+PT+AY  VEEV ++ +  S K F HVPSEI A E EE+GVEHLLRD+KDTT+ +L+ ++T +L  LKGL+A+LR+I+ YL  V D K+P+NH+I+Y LQD+FNLLP++
Sbjct:   10 KVIVHPLVLLSVVDHFNRMGKIGNQKRVVGVLLGCWRSKGVLDVSNSFAVPFDEDDKDKSVWFLDHDYLENMYGMFKKVNARERVVGWYHTGPKLHQNDIAINELVRRYCPNSVLVIIDAKPKDLGLPTEAYISVEEVHDDGSPTS-KTFEHVPSEIGAEEAEEVGVEHLLRDIKDTTVGSLSQKITNQLMGLKGLNAQLRDIKQYLQRVGDSKMPINHQIVYQLQDIFNLLPDI 243          
BLAST of FC929885 vs. ExPASy Swiss-Prot
Match: RPN8_NEUCR (26S proteasome regulatory subunit rpn-8 OS=Neurospora crassa GN=rpn-8 PE=3 SV=1)

HSP 1 Score: 295.049 bits (754), Expect = 2.666e-79
Identity = 144/235 (61.28%), Postives = 182/235 (77.45%), Query Frame = 2
Query:    8 VIVHPLVLLSIVDNYNRVA--KDTRKRVVGVLLGSSFKGTVDVSNSYAVPFEEDDKDPGIWFLDHNYHESMYSMFKRINAKEHVVGWYSTGPKLRENDLDIHQLFHNYVPNPVLVIIDVQPKELGIPTKAYYDVEEVKENATQKSQKVFVHVPSEIAAHEVEEIGVEHLLRDVKDTTISTLANEVTGKLTALKGLDARLREIRGYLDLVIDEKLPLNHEILYHLQDVFNLLPNLN 706
            V V PLVLLS+VD+YNR    K   KRVVGVLLG +    V VSNS+AVPFEEDDKDP +WFLDHNY ESM  MFK++NA+E ++GWY +GPKLR +DLDI++LF  Y PNP+LVI+DVQPKE G+PT AY+ V+E+K++ T  S K FVH PS I A E EEIGVEHLLRD++D  + TL+  +T ++ +L+GL  RLR+I+ YL  V+D +LP+NH IL +LQDVFNLLPNL+
Sbjct:   16 VSVAPLVLLSVVDHYNRTQANKSKSKRVVGVLLGQNDGKNVRVSNSFAVPFEEDDKDPSVWFLDHNYVESMNDMFKKVNAREKLIGWYHSGPKLRASDLDINELFKRYTPNPLLVIVDVQPKETGVPTDAYFAVDEIKDDGTTTS-KTFVHTPSIIEAEEAEEIGVEHLLRDIRDVAVGTLSTRITNQMRSLQGLHHRLRDIQAYLQKVLDGQLPVNHAILGNLQDVFNLLPNLS 249          
BLAST of FC929885 vs. ExPASy Swiss-Prot
Match: RPN8_SCHPO (26S proteasome regulatory subunit rpn8 OS=Schizosaccharomyces pombe GN=rpn8 PE=2 SV=1)

HSP 1 Score: 290.812 bits (743), Expect = 5.028e-78
Identity = 138/234 (58.97%), Postives = 182/234 (77.78%), Query Frame = 2
Query:    2 EKVIVHPLVLLSIVDNYNRVAKDTRKRVVGVLLGSSFKGTVDVSNSYAVPFEEDDKDPGIWFLDHNYHESMYSMFKRINAKEHVVGWYSTGPKLRENDLDIHQLFHNYVPNPVLVIIDVQPKELGIPTKAYYDVEEVKENATQKSQKVFVHVPSEIAAHEVEEIGVEHLLRDVKDTTISTLANEVTGKLTALKGLDARLREIRGYLDLVIDEKLPLNHEILYHLQDVFNLLPNL 703
            ++VIVHPLVLLS VD+YNR AK T++RVVG+LLG +    V+V+NSYA+PFEED+K+  +WFLDHN+ ESM  MFK+INA E +VGWY TGP+LR +DL+I+ L   Y+PNPVLVIIDV+PK +G+PT AY+ ++E++++ + KS + FVH+PS I A E EEIGVEHLLRD +D ++ TLA  VT +  +L+GL  RL EI  YL  V+D +LP+NH IL  LQ VFNLLPN+
Sbjct:   15 QQVIVHPLVLLSAVDSYNRSAKGTKRRVVGILLGQNNGDVVNVANSYAIPFEEDEKNASVWFLDHNFMESMNEMFKKINANEKLVGWYHTGPQLRPSDLEINNLLKKYIPNPVLVIIDVKPKSVGLPTNAYFAIDEIEDDGS-KSSRTFVHLPSSIEAEEAEEIGVEHLLRDTRDASVGTLATRVTQQAQSLQGLGQRLTEIADYLRKVVDGQLPINHAILAELQSVFNLLPNI 247          
BLAST of FC929885 vs. ExPASy Swiss-Prot
Match: RPN8_YEAST (26S proteasome regulatory subunit RPN8 OS=Saccharomyces cerevisiae GN=RPN8 PE=1 SV=3)

HSP 1 Score: 257.299 bits (656), Expect = 6.161e-68
Identity = 125/242 (51.65%), Postives = 177/242 (73.14%), Query Frame = 2
Query:    2 EKVIVHPLVLLSIVDNYNRVAKDTRKRVVGVLLGSSFKGTVDVSNSYAVPFEEDDKDPGIWFLDHNYHESMYSMFKRINAKEHVVGWYSTGPKLRENDLDIHQLFHNYVP-NPVLVIIDVQPKELGIPTKAYYDVEEVKENATQKSQKVFVHVPSEIAAHEVEEIGVEHLLRDVKDTTISTLANEVTGKLTALKGLDARLREIRGYLDLVIDEKLPLNHEILYHLQDVFNLLPNLNVAEXNQ 724
            EKV + PLVLLS +D+Y R      KR VGV+LG +   T+ V+NS+A+PFEED+K+  +WFLDHNY E+M  M K+INAKE ++GWY +GPKLR +DL I++LF  Y   NP+L+I+DV+ + +G+PT AY  +E+VK++ T  ++K F+H+P  I A E EEIGVEHLLRDV+D     L+  +T +L +LKGL ++L+++  YLD VI+++LP+NH IL  LQDVFNLLPNL   + ++
Sbjct:    6 EKVTIAPLVLLSALDHYERTQTKENKRCVGVILGDANSSTIRVTNSFALPFEEDEKNSDVWFLDHNYIENMNEMCKKINAKEKLIGWYHSGPKLRASDLKINELFKKYTQNNPLLLIVDVKQQGVGLPTDAYVAIEQVKDDGT-STEKTFLHLPCTIEAEEAEEIGVEHLLRDVRDQAAGGLSIRLTNQLKSLKGLQSKLKDVVEYLDKVINKELPINHTILGKLQDVFNLLPNLGTPDDDE 246          
BLAST of FC929885 vs. ExPASy Swiss-Prot
Match: RPN8_CANGA (26S proteasome regulatory subunit RPN8 OS=Candida glabrata GN=RPN8 PE=3 SV=1)

HSP 1 Score: 253.062 bits (645), Expect = 1.162e-66
Identity = 126/239 (52.72%), Postives = 173/239 (72.38%), Query Frame = 2
Query:    2 EKVIVHPLVLLSIVDNYNRVAKDTRKRVVGVLLGSSFKGTVDVSNSYAVPFEEDDKDPGIWFLDHNYHESMYSMFKRINAKEHVVGWYSTGPKLRENDLDIHQLFHNYVP-NPVLVIIDVQPKELGIPTKAYYDVEEVKENATQKSQKVFVHVPSEIAAHEVEEIGVEHLLRDVKDTTISTLANEVTGKLTALKGLDARLREIRGYLDLVIDEKLPLNHEILYHLQDVFNLLPNLNVAE 715
            + V + PLVLLS++D+Y R      KR VGV+LG S   T+ V+NS+A+PFEED+K+  +WFLDHNY ESM  M K+INAKE ++GWY +GPKLR +DL I++LF  Y   NP+L+I+DV+ +++G+PT AY  VE+VK++ T  ++K F+H+P  + A E EEIGVEHLLRDV+D     L+  +T +L +LKGL  +L +I  YL+ VI+ +LP+NH IL  LQDVFNLLPNL   E
Sbjct:    6 DNVTIAPLVLLSVLDHYERTNTPEGKRCVGVILGDSQTNTIRVTNSFALPFEEDEKNSDVWFLDHNYIESMNEMCKKINAKEKLIGWYHSGPKLRASDLKINELFKKYTQGNPLLLIVDVKQQDVGLPTDAYMAVEQVKDDGT-STEKTFLHLPCTVEAEEAEEIGVEHLLRDVRDQAAGGLSIRLTNQLKSLKGLQKKLNDIVIYLNKVINNELPVNHTILGKLQDVFNLLPNLGYNE 243          
The following BLAST results are available for this feature:
BLAST of FC929885 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 61
Match NameE-valueIdentityDescription
PSD7_ARATH2.156e-12188.89Probable 26S proteasome non-ATPase regulatory subu... [more]
PSD7_BOVIN8.009e-8460.6626S proteasome non-ATPase regulatory subunit 7 OS=... [more]
PSD7_HUMAN3.975e-8360.2526S proteasome non-ATPase regulatory subunit 7 OS=... [more]
PSD7_MOUSE5.191e-8360.2526S proteasome non-ATPase regulatory subunit 7 OS=... [more]
PSD7_DICDI1.510e-8260.8326S proteasome non-ATPase regulatory subunit 7 OS=... [more]
PSD7_DROME1.670e-8161.7026S proteasome non-ATPase regulatory subunit 7 OS=... [more]
RPN8_NEUCR2.666e-7961.2826S proteasome regulatory subunit rpn-8 OS=Neurosp... [more]
RPN8_SCHPO5.028e-7858.9726S proteasome regulatory subunit rpn8 OS=Schizosa... [more]
RPN8_YEAST6.161e-6851.6526S proteasome regulatory subunit RPN8 OS=Saccharo... [more]
RPN8_CANGA1.162e-6652.7226S proteasome regulatory subunit RPN8 OS=Candida ... [more]

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Properties
Property NameValue
Genbank descriptionC34001E04EF PostHarvC1 Citrus clementina cDNA clone C34001E04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929885 ID=FC929885; Name=FC929885; organism=Citrus clementina; type=EST; length=732bp
AGAGAAGGTCATAGTTCACCCGCTCGTCTTACTAAGCATCGTCGACAATT
ACAACCGCGTCGCCAAGGACACGCGCAAGCGCGTCGTCGGCGTCCTCCTC
GGTAGCTCCTTCAAAGGCACCGTCGATGTCTCCAACAGCTACGCAGTGCC
TTTTGAGGAAGATGACAAAGACCCAGGAATATGGTTTCTCGACCACAACT
ACCATGAATCAATGTATTCAATGTTCAAAAGAATCAATGCCAAGGAGCAT
GTCGTAGGTTGGTACAGTACAGGACCCAAGCTACGAGAGAATGATCTTGA
CATTCACCAATTATTTCACAACTATGTCCCAAATCCTGTATTGGTCATTA
TTGATGTCCAACCAAAGGAGCTTGGAATACCCACCAAGGCTTACTATGAT
GTTGAGGAGGTTAAAGAGAATGCTACTCAGAAAAGCCAAAAGGTCTTTGT
ACACGTGCCATCAGAAATTGCCGCTCATGAAGTCGAAGAAATCGGAGTGG
AGCACTTGCTAAGGGACGTGAAAGACACCACCATCAGTACACTTGCAAAT
GAGGTCACTGGAAAACTTACAGCCCTAAAGGGTCTGGATGCTCGTTTGCG
TGAGATCCGTGGTTACCTTGACCTTGTTATTGATGAGAAACTTCCGTTGA
ATCACGAGATACTTTACCATTTACAGGATGTGTTTAACCTTTTACCGAAT
CTGAATGTGGCTGAATTNAATCAGGCCTTTTC
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