FC929890
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC929890 vs. ExPASy Swiss-Prot
Match: RL5_CUCSA (60S ribosomal protein L5 OS=Cucumis sativus GN=RPL5 PE=2 SV=1) HSP 1 Score: 355.525 bits (911), Expect = 1.488e-97 Identity = 175/209 (83.73%), Postives = 191/209 (91.39%), Query Frame = 1 Query: 58 KAQKSKAYFKRYQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDITAQIISASIAGDIVLASAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGHVEATGEDYSVEPTENRRPFRALLDVGLVKTTTGNRVFXXXXXXXXXXXXIPHSEKRFAGFSKDSKQLDAEVHRKYIYCGHVAAYMRTLMED 684 KAQK+KAYFKRYQVK+KRRREGKTDYRARIRLINQDKNKYNTPKYRFVVR +NKDITAQIISASIAGD+VLASAY+HELP+YGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEG+VEATGEDYSVEP + RRPFRALLDVGL++TTTGNRVF IPHS+KRFAG++K+ +QLD EVHRKYI+ GHVAAYMRTLMED Sbjct: 5 KAQKTKAYFKRYQVKFKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRTSNKDITAQIISASIAGDLVLASAYSHELPQYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGNVEATGEDYSVEPADTRRPFRALLDVGLIRTTTGNRVFGALKGALDGGLDIPHSDKRFAGYAKNGQQLDVEVHRKYIFGGHVAAYMRTLMED 213
BLAST of FC929890 vs. ExPASy Swiss-Prot
Match: RL52_ARATH (60S ribosomal protein L5-2 OS=Arabidopsis thaliana GN=RPL5B PE=2 SV=3) HSP 1 Score: 340.887 bits (873), Expect = 3.793e-93 Identity = 167/209 (79.90%), Postives = 185/209 (88.52%), Query Frame = 1 Query: 58 KAQKSKAYFKRYQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDITAQIISASIAGDIVLASAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGHVEATGEDYSVEPTENRRPFRALLDVGLVKTTTGNRVFXXXXXXXXXXXXIPHSEKRFAGFSKDSKQLDAEVHRKYIYCGHVAAYMRTLMED 684 K+ KS AYFKRYQVK++RRR+GKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDI AQI+SASIAGDIV ASAYAHELP+YGL VGLTNYAAAYCTGLLLARRVLKMLEMD EYEG+VEATGED+SVEPT++RRPFRALLDVGL++TTTGNRVF IPHS+KRFAGF K++KQLDAE+HR YIY GHV+ YM+ L ED Sbjct: 5 KSSKSNAYFKRYQVKFRRRRDGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIVAQIVSASIAGDIVKASAYAHELPQYGLTVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDFSVEPTDSRRPFRALLDVGLIRTTTGNRVFGALKGALDGGLDIPHSDKRFAGFHKENKQLDAEIHRNYIYGGHVSNYMKLLGED 213
BLAST of FC929890 vs. ExPASy Swiss-Prot
Match: RL51_ARATH (60S ribosomal protein L5-1 OS=Arabidopsis thaliana GN=ATL5 PE=2 SV=2) HSP 1 Score: 340.502 bits (872), Expect = 4.954e-93 Identity = 167/209 (79.90%), Postives = 185/209 (88.52%), Query Frame = 1 Query: 58 KAQKSKAYFKRYQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDITAQIISASIAGDIVLASAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGHVEATGEDYSVEPTENRRPFRALLDVGLVKTTTGNRVFXXXXXXXXXXXXIPHSEKRFAGFSKDSKQLDAEVHRKYIYCGHVAAYMRTLMED 684 K+ KS AYFKRYQVK++RRR+GKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDI AQI+SASIAGDIV ASAYAHELP+YGL VGLTNYAAAYCTGLLLARRVLKMLEMD EYEG+VEATGED+SVEPT++RRPFRALLDVGL++TTTGNRVF IPHS+KRFAGF K++KQLDAE+HR YIY GHV+ YM+ L ED Sbjct: 5 KSTKSNAYFKRYQVKFRRRRDGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIVAQIVSASIAGDIVKASAYAHELPQYGLTVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDFSVEPTDSRRPFRALLDVGLIRTTTGNRVFGALKGALDGGLDIPHSDKRFAGFHKENKQLDAEIHRNYIYGGHVSNYMKLLGED 213
BLAST of FC929890 vs. ExPASy Swiss-Prot
Match: RL51_ORYSI (60S ribosomal protein L5-1 OS=Oryza sativa subsp. indica GN=RPL5A PE=2 SV=2) HSP 1 Score: 331.643 bits (849), Expect = 2.301e-90 Identity = 158/209 (75.60%), Postives = 182/209 (87.08%), Query Frame = 1 Query: 58 KAQKSKAYFKRYQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDITAQIISASIAGDIVLASAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGHVEATGEDYSVEPTENRRPFRALLDVGLVKTTTGNRVFXXXXXXXXXXXXIPHSEKRFAGFSKDSKQLDAEVHRKYIYCGHVAAYMRTLMED 684 K QK+ AY+KR+QVK+KRRR+GKTDYRARIRL NQDKNKYNTPKYRFVVRFTNKDITAQI+ A+IAGDIV+A+AY+HELPRYGLEVGLTNYAAAYCTGLLLARRVLK+ +D EYEG++EATGEDY VEP + RRPFRALLDVGL++TTTGNRVF IPHS+KRFAGF KD KQLD+++HRKYIY GHVA YMR++ E+ Sbjct: 6 KTQKTNAYYKRFQVKFKRRRQGKTDYRARIRLTNQDKNKYNTPKYRFVVRFTNKDITAQIVYATIAGDIVMAAAYSHELPRYGLEVGLTNYAAAYCTGLLLARRVLKLRGLDQEYEGNIEATGEDYYVEPADERRPFRALLDVGLIRTTTGNRVFGALKGALDGGLDIPHSDKRFAGFKKDEKQLDSDIHRKYIYGGHVADYMRSMAEE 214
BLAST of FC929890 vs. ExPASy Swiss-Prot
Match: RL51_ORYSJ (60S ribosomal protein L5-1 OS=Oryza sativa subsp. japonica GN=RPL5A PE=2 SV=1) HSP 1 Score: 330.102 bits (845), Expect = 6.695e-90 Identity = 158/209 (75.60%), Postives = 181/209 (86.60%), Query Frame = 1 Query: 58 KAQKSKAYFKRYQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDITAQIISASIAGDIVLASAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGHVEATGEDYSVEPTENRRPFRALLDVGLVKTTTGNRVFXXXXXXXXXXXXIPHSEKRFAGFSKDSKQLDAEVHRKYIYCGHVAAYMRTLMED 684 K QK+ AY KR+QVK+KRRR+GKTDYRARIRL NQDKNKYNTPKYRFVVRFTNKDITAQI+ A+IAGDIV+A+AY+HELPRYGLEVGLTNYAAAYCTGLLLARRVLK+ +D EYEG++EATGEDY VEP + RRPFRALLDVGL++TTTGNRVF IPHS+KRFAGF KD KQLD+++HRKYIY GHVA YMR++ E+ Sbjct: 6 KTQKTNAYHKRFQVKFKRRRQGKTDYRARIRLTNQDKNKYNTPKYRFVVRFTNKDITAQIVYATIAGDIVMAAAYSHELPRYGLEVGLTNYAAAYCTGLLLARRVLKLRGLDQEYEGNIEATGEDYYVEPADERRPFRALLDVGLIRTTTGNRVFGALKGALDGGLDIPHSDKRFAGFKKDEKQLDSDIHRKYIYGGHVADYMRSMAEE 214
BLAST of FC929890 vs. ExPASy Swiss-Prot
Match: RL52_ORYSJ (60S ribosomal protein L5-2 OS=Oryza sativa subsp. japonica GN=RPL5B PE=3 SV=1) HSP 1 Score: 319.316 bits (817), Expect = 1.182e-86 Identity = 156/209 (74.64%), Postives = 178/209 (85.17%), Query Frame = 1 Query: 58 KAQKSKAYFKRYQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDITAQIISASIAGDIVLASAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGHVEATGEDYSVEPTENRRPFRALLDVGLVKTTTGNRVFXXXXXXXXXXXXIPHSEKRFAGFSKDSKQLDAEVHRKYIYCGHVAAYMRTLMED 684 K QK+ AYFKR+QVK+KRRR+GKTDYRARIRL NQDKNKYNTPKYRFV TNKDITAQI+ A+IAGDIV+A+AY+HELPRYGLEVGLTNYAAAYCTGLLLARRVL + +D EYEG+VEATGEDY VEP + RRPFRALLDVGL++TTTGNRVF IPHS+KRFAGF KD KQLD+++HRKYIY GHVA YMR++ E+ Sbjct: 9 KTQKTHAYFKRFQVKFKRRRQGKTDYRARIRLTNQDKNKYNTPKYRFV---TNKDITAQIVYATIAGDIVMAAAYSHELPRYGLEVGLTNYAAAYCTGLLLARRVLTLRGLDQEYEGNVEATGEDYYVEPADERRPFRALLDVGLIRTTTGNRVFGALKGALDGGLDIPHSDKRFAGFKKDEKQLDSDIHRKYIYGGHVADYMRSMAEE 214
BLAST of FC929890 vs. ExPASy Swiss-Prot
Match: RL5_CAEBR (60S ribosomal protein L5 OS=Caenorhabditis briggsae GN=rpl-5 PE=3 SV=2) HSP 1 Score: 262.692 bits (670), Expect = 1.313e-69 Identity = 130/209 (62.20%), Postives = 155/209 (74.16%), Query Frame = 1 Query: 58 KAQKSKAYFKRYQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDITAQIISASIAGDIVLASAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGHVEATGEDYSVEPTENRRPFRALLDVGLVKTTTGNRVFXXXXXXXXXXXXIPHSEKRFAGFSKDSKQLDAEVHRKYIYCGHVAAYMRTLMED 684 K K+KAYFKRYQVK KRRREGKTDY AR RL QDKNKYNTPKYR +VR TNKDI AQ+ + I GD+V+ASAYAHELPRYGL+ GLTNYAAAY TGLLLARR LK + +D+ Y+GH E TGEDY+VE +R PF+A+LD+GL +TTTG+++F +PHSE RF GF ++SK +AE HR I HVA YM L E+ Sbjct: 5 KVIKNKAYFKRYQVKLKRRREGKTDYYARKRLTVQDKNKYNTPKYRLIVRLTNKDIVAQLAYSKIEGDVVVASAYAHELPRYGLKAGLTNYAAAYATGLLLARRHLKAIGLDSTYKGHEELTGEDYNVEEEGDRAPFKAVLDIGLARTTTGSKIFAVMKGVADGGINVPHSESRFFGFDQESKDYNAEAHRDRILGKHVADYMSLLKEE 213
BLAST of FC929890 vs. ExPASy Swiss-Prot
Match: RL5_CAEEL (60S ribosomal protein L5 OS=Caenorhabditis elegans GN=rpl-5 PE=2 SV=1) HSP 1 Score: 261.922 bits (668), Expect = 2.239e-69 Identity = 128/209 (61.24%), Postives = 157/209 (75.12%), Query Frame = 1 Query: 58 KAQKSKAYFKRYQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDITAQIISASIAGDIVLASAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGHVEATGEDYSVEPTENRRPFRALLDVGLVKTTTGNRVFXXXXXXXXXXXXIPHSEKRFAGFSKDSKQLDAEVHRKYIYCGHVAAYMRTLMED 684 K K+KAYFKRYQVK +RRREGKTDY AR RL QDKNKYNTPKYR +VR TNKD+ AQ+ + I GD+V+ASAY+HELPRYGL+VGLTNYAAAY TGLLLARR LK + +D+ Y+GH E TGEDY+VE +R PF+A+LD+GL +TTTG+++F +PHSE RF GF ++SK+ +AE HR I HVA YM L E+ Sbjct: 5 KVIKNKAYFKRYQVKLRRRREGKTDYYARKRLTVQDKNKYNTPKYRLIVRITNKDVVAQLAYSKIEGDVVVASAYSHELPRYGLKVGLTNYAAAYATGLLLARRHLKTIGLDSTYKGHEELTGEDYNVEEEGDRAPFKAVLDIGLARTTTGSKIFAVMKGVADGGINVPHSESRFFGFDQESKEYNAEAHRDRILGKHVADYMTYLKEE 213
BLAST of FC929890 vs. ExPASy Swiss-Prot
Match: RL5_SUBDO (60S ribosomal protein L5 OS=Suberites domuncula GN=RPL5 PE=2 SV=1) HSP 1 Score: 261.536 bits (667), Expect = 2.924e-69 Identity = 132/210 (62.86%), Postives = 157/210 (74.76%), Query Frame = 1 Query: 58 KAQKSKAYFKRYQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDITAQIISASIAGDIVLASAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGHVEATGEDYSVEPT-ENRRPFRALLDVGLVKTTTGNRVFXXXXXXXXXXXXIPHSEKRFAGFSKDSKQLDAEVHRKYIYCGHVAAYMRTLMED 684 K K+KAYFKRYQVK++RRREGKTDYRAR RL+ QDKNKYNTPKYR V+RFTN DI QII A I GD VL SAYAHELPRYG++VGLTNYAAAYCTGLLLARR+L L + +Y G + GED++VE + RPFRA LDVGL +TTTGNRVF IPHS RF G+ ++S QL+A+ R+YI+ GHV+ YM+ L E+ Sbjct: 5 KVIKNKAYFKRYQVKFRRRREGKTDYRARKRLVVQDKNKYNTPKYRIVIRFTNTDIICQIIYAKIEGDKVLVSAYAHELPRYGVKVGLTNYAAAYCTGLLLARRLLTNLGLADKYAGQTDIDGEDFNVEHMGDGPRPFRAFLDVGLTRTTTGNRVFAAMKGAVDGGIDIPHSPSRFVGYDEESSQLEADKLRQYIFGGHVSDYMKYLQEE 214
BLAST of FC929890 vs. ExPASy Swiss-Prot
Match: RL5A_XENLA (60S ribosomal protein L5-A OS=Xenopus laevis GN=rpl5-A PE=2 SV=2) HSP 1 Score: 255.758 bits (652), Expect = 1.605e-67 Identity = 125/210 (59.52%), Postives = 154/210 (73.33%), Query Frame = 1 Query: 58 KAQKSKAYFKRYQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDITAQIISASIAGDIVLASAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGHVEATGEDYSVEPTENR-RPFRALLDVGLVKTTTGNRVFXXXXXXXXXXXXIPHSEKRFAGFSKDSKQLDAEVHRKYIYCGHVAAYMRTLMED 684 K K+KAYFKRYQVK++RRREGKTDY AR RL+ QDKNKYNTPKYR +VR TN+DI QI A I GD+++ +AYAHELP+YG++VGLTNYAAAYCTGLLLARR+L +D YEG VE TG++Y+VE + F LD GL +TTTGN+VF IPHS KRF G+ +SK+ + EVHRK+I+ +VA YMR LME+ Sbjct: 5 KVVKNKAYFKRYQVKFRRRREGKTDYYARKRLVIQDKNKYNTPKYRMIVRVTNRDIICQIAYARIEGDMIVCAAYAHELPKYGIKVGLTNYAAAYCTGLLLARRLLNKFGLDKVYEGQVEVTGDEYNVESIDGEPGAFTCYLDAGLTRTTTGNKVFGALKGAVDGGLSIPHSTKRFPGYDSESKEFNPEVHRKHIFAQNVAEYMRLLMEE 214 The following BLAST results are available for this feature:
BLAST of FC929890 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 81
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Sequences
The
following sequences are available for this feature:
EST sequence >FC929890 ID=FC929890; Name=FC929890; organism=Citrus clementina; type=EST; length=684bpback to top |