FC929894
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC929894 vs. ExPASy Swiss-Prot
Match: RTNLB_ARATH (Reticulon-like protein B2 OS=Arabidopsis thaliana GN=RTNLB2 PE=1 SV=1) HSP 1 Score: 252.677 bits (644), Expect = 1.441e-66 Identity = 131/213 (61.50%), Postives = 157/213 (73.71%), Query Frame = 1 Query: 97 MSDEHKHEEPAG-----------ESVMEKITEKIH---GHXXXXXXXXXXXXXXXXXXXXXLKTKVFRLFGREKPVHKVLGGGKPADVFLWRNKKISAGVLGGATAIWVLFQLLEYHLLTLVCHCLIVALAVLFLWSNASTFINKSPPRIPEVYIPEEPVLQLASALRFEINRAFTLLREIASGRDLKKFLSVIAGLWVVSIVGSWCIS*LVL 693 M+DEHKHEE + ES+MEK++EKIH LK+KV+RLFGRE+PVHKVLGGGKPAD+F+W++KK+S GV GGAT WVLF+L+EYHLLTL+CH +IVALAVLFLWSNA+ FI+KSPP+IPEV+IPEEP+LQLAS LR EINR + LREIASGRD+KKFLS IAGLWV+SI+G C S L L Sbjct: 1 MADEHKHEESSPNLDPAVEVVERESLMEKLSEKIHHKGDSSSSSSSDDENEKKSSSSSPKSLKSKVYRLFGRERPVHKVLGGGKPADIFMWKDKKMSGGVFGGATVAWVLFELMEYHLLTLLCHVMIVALAVLFLWSNATMFIHKSPPKIPEVHIPEEPLLQLASGLRIEINRGISSLREIASGRDIKKFLSAIAGLWVLSILGG-CYSFLTL 212
BLAST of FC929894 vs. ExPASy Swiss-Prot
Match: RTNLA_ARATH (Reticulon-like protein B1 OS=Arabidopsis thaliana GN=RTNLB1 PE=1 SV=1) HSP 1 Score: 252.292 bits (643), Expect = 1.882e-66 Identity = 132/217 (60.83%), Postives = 159/217 (73.27%), Query Frame = 1 Query: 97 MSDEHKHEE------PA-----GESVMEKITEKIH-------GHXXXXXXXXXXXXXXXXXXXXXLKTKVFRLFGREKPVHKVLGGGKPADVFLWRNKKISAGVLGGATAIWVLFQLLEYHLLTLVCHCLIVALAVLFLWSNASTFINKSPPRIPEVYIPEEPVLQLASALRFEINRAFTLLREIASGRDLKKFLSVIAGLWVVSIVGSWCIS*LVL 693 M++EHKH+E PA ES+M+KI+EKIH +K+KV+RLFGRE+PVHKVLGGGKPAD+F+W+NKK+S GVLGGATA WV+F+L+EYHLLTL+CH +IV LAVLFLWSNA+ FINKSPP+IPEV+IPEEP+LQLAS LR EINR F+ LREIASGRDLKKFL IAGLWV+SI+G C + L L Sbjct: 1 MAEEHKHDESVIAPEPAVEVVERESLMDKISEKIHHGGDSSSSSSSSDDEDEKKKTKKPSSPSSSMKSKVYRLFGREQPVHKVLGGGKPADIFMWKNKKMSGGVLGGATAAWVVFELMEYHLLTLLCHVMIVVLAVLFLWSNATMFINKSPPKIPEVHIPEEPILQLASGLRIEINRGFSSLREIASGRDLKKFLIAIAGLWVLSILGG-CFNFLTL 216
BLAST of FC929894 vs. ExPASy Swiss-Prot
Match: RTNLC_ARATH (Reticulon-like protein B3 OS=Arabidopsis thaliana GN=RTNLB3 PE=1 SV=1) HSP 1 Score: 249.595 bits (636), Expect = 1.220e-65 Identity = 128/193 (66.32%), Postives = 150/193 (77.72%), Query Frame = 1 Query: 97 MSDEHKHEEPAGESVMEKITEKIHGHXXXXXXXXXXXXXXXXXXXXXLKTKVFRLFGREKPVHKVLGGGKPADVFLWRNKKISAGVLGGATAIWVLFQLLEYHLLTLVCHCLIVALAVLFLWSNASTFINKSPPRIPEVYIPEEPVLQLASALRFEINRAFTLLREIASGRDLKKFLSVIAGLWVVSIVGSWC 675 M++EHKHEE S+MEKI+EKIHGH LKTK++RLFGRE+P+HK+ GGGKPAD+FLWRNKK+S GVLG AT W+LF+LLEY+LLTL H I+ALAVLFLWS+ASTFI+KSP IPEV+IPE+ VLQLAS LR EINR FT+LR+IASGRDLKKFL VIAGLWV+S VGS C Sbjct: 1 MAEEHKHEE----SIMEKISEKIHGHDDSSSSSSDSDDDKNSAS---LKTKIYRLFGREQPLHKLFGGGKPADIFLWRNKKVSGGVLGAATVSWILFELLEYNLLTLFGHISILALAVLFLWSSASTFIHKSPLHIPEVHIPEDVVLQLASGLRIEINRGFTVLRDIASGRDLKKFLLVIAGLWVLSKVGSSC 186
BLAST of FC929894 vs. ExPASy Swiss-Prot
Match: RTNLD_ARATH (Reticulon-like protein B4 OS=Arabidopsis thaliana GN=RTNLB4 PE=1 SV=1) HSP 1 Score: 246.514 bits (628), Expect = 1.033e-64 Identity = 125/200 (62.50%), Postives = 146/200 (73.00%), Query Frame = 1 Query: 97 MSDEHKHEEPAGESVMEKITEKIHGHXXXXXXXXXXXXXXXXXXXXX-LKTKVFRLFGREKPVHKVLGGGKPADVFLWRNKKISAGVLGGATAIWVLFQLLEYHLLTLVCHCLIVALAVLFLWSNASTFINKSPPRIPEVYIPEEPVLQLASALRFEINRAFTLLREIASGRDLKKFLSVIAGLWVVSIVGSWCIS*LVL 693 M ++HKHEE S++EKI EKIHGH K+K++RLFGREKPVHKVLGGGKPAD+FLWRNKK+S GVLG TA WVLF+L EYHLL +CH I ALA LFLWSNA TFI+KS P IPEV+IPE+P+LQL S LR EINR TLLR IASG+D+KKF+ VIAGLWV+SI+GS C + L L Sbjct: 1 MVEDHKHEE----SILEKIVEKIHGHGDSSSLSDSDDDKKSTSSSSSSFKSKIYRLFGREKPVHKVLGGGKPADIFLWRNKKVSGGVLGAVTASWVLFELFEYHLLAFLCHFAIFALAALFLWSNACTFIHKSTPHIPEVHIPEDPILQLVSGLRIEINRGLTLLRNIASGKDVKKFILVIAGLWVLSIIGS-CYNFLTL 195
BLAST of FC929894 vs. ExPASy Swiss-Prot
Match: RTNLE_ARATH (Reticulon-like protein B5 OS=Arabidopsis thaliana GN=RTNLB5 PE=1 SV=1) HSP 1 Score: 233.417 bits (594), Expect = 9.048e-61 Identity = 113/192 (58.85%), Postives = 144/192 (75.00%), Query Frame = 1 Query: 97 MSDEHKHEEPAGESVMEKITEKIHGHXXXXXXXXXXXXXXXXXXXXXLKTKVFRLFGREKPVHKVLGGGKPADVFLWRNKKISAGVLGGATAIWVLFQLLEYHLLTLVCHCLIVALAVLFLWSNASTFINKSPPRIPEVYIPEEPVLQLASALRFEINRAFTLLREIASGRDLKKFLSVIAGLWVVSIVGSW 672 M++E + P ES+MEKI+EKIH H +K K++R+FGREKPVHKVLGGGKPADVFLWR+KK+S VLG ATAIWVLF+L+EYHLL+L+CH I+AL LFLWSNA T INK+ P+IPE+++PEE L +AS+LR E+N+AF +LR IA GRDLKKFL V+ GLW++S+VG+W Sbjct: 1 MAEEIEKSVPTEESLMEKISEKIHHHDSSSSSESEYEKPDSPSA---VKAKIYRMFGREKPVHKVLGGGKPADVFLWRDKKLSGAVLGVATAIWVLFELVEYHLLSLLCHISILALGGLFLWSNAHTLINKTSPQIPEIHVPEEAFLVVASSLRNELNQAFVILRSIALGRDLKKFLMVVVGLWIISVVGNW 189
BLAST of FC929894 vs. ExPASy Swiss-Prot
Match: RTNLF_ARATH (Reticulon-like protein B6 OS=Arabidopsis thaliana GN=RTNLB6 PE=1 SV=1) HSP 1 Score: 227.639 bits (579), Expect = 4.965e-59 Identity = 114/192 (59.38%), Postives = 140/192 (72.92%), Query Frame = 1 Query: 97 MSDEHKHEEPAGESVMEKITEKIHGHXXXXXXXXXXXXXXXXXXXXXLKTKVFRLFGREKPVHKVLGGGKPADVFLWRNKKISAGVLGGATAIWVLFQLLEYHLLTLVCHCLIVALAVLFLWSNASTFINKSPPRIPEVYIPEEPVLQLASALRFEINRAFTLLREIASGRDLKKFLSVIAGLWVVSIVGSW 672 M++E + ES+MEKI +KIH H LK K++RLFGREKPVHKVLGGG PADVFLWR+KK+SA VLG ATAIWVLF+L+EYH L+LVCH LI ALA LFL SNA F+NK+PP+IPE++I EE L + SALR E+N+AF +LR IA GRDLKKFL V+ GLW++S+VG+W Sbjct: 1 MAEELEKSMHKEESLMEKIADKIHDHDSSSSSDSEHEKPESPSA---LKAKIYRLFGREKPVHKVLGGGLPADVFLWRDKKLSASVLGVATAIWVLFELVEYHFLSLVCHILIFALAALFLLSNAHAFMNKTPPKIPEIHIKEEHFLMIVSALRNELNQAFVILRSIALGRDLKKFLMVVFGLWIISVVGNW 189
BLAST of FC929894 vs. ExPASy Swiss-Prot
Match: RTNLG_ARATH (Reticulon-like protein B7 OS=Arabidopsis thaliana GN=RTNLB7 PE=2 SV=2) HSP 1 Score: 163.696 bits (413), Expect = 8.804e-40 Identity = 75/145 (51.72%), Postives = 104/145 (71.72%), Query Frame = 1 Query: 238 LKTKVFRLFGREKPVHKVLGGGKPADVFLWRNKKISAGVLGGATAIWVLFQLLEYHLLTLVCHCLIVALAVLFLWSNASTFINKSPPRIPEVYIPEEPVLQLASALRFEINRAFTLLREIASGRDLKKFLSVIAGLWVVSIVGSW 672 + ++R+FGRE+P+H VLGGGKPADV LWR+KK++ G+L T IW+LF LLT +C I+ L + FLWSNA +NKSP + ++YIPE+P+LQ ASA+ FE+N AF LR IA RD+K F+ + GLW+VS++G+W Sbjct: 47 INAPIYRMFGRERPIHMVLGGGKPADVLLWRDKKVTLGLLSAVTVIWLLFGFGGRRLLTSLCRGSILFLLLSFLWSNA---LNKSPENMMDIYIPEKPLLQAASAMTFELNCAFATLRSIALERDIKNFVMAVIGLWLVSVIGNW 188
BLAST of FC929894 vs. ExPASy Swiss-Prot
Match: RTNLH_ARATH (Reticulon-like protein B8 OS=Arabidopsis thaliana GN=RTNLB8 PE=1 SV=1) HSP 1 Score: 159.073 bits (401), Expect = 2.169e-38 Identity = 72/140 (51.43%), Postives = 102/140 (72.86%), Query Frame = 1 Query: 256 RLFGREKPVHKVLGGGKPADVFLWRNKKISAGVLGGATAIWVLFQLLEYHLLTLVCHCLIVALAVLFLWSNASTFINKSPPRIPEVYIPEEPVLQLASALRFEINRAFTLLREIASGRDLKKFLSVIAGLWVVSIVGSWC 675 RLF R+KP+H VLGGGK ADV LWRNKKISA VL GATAIWVLF+ + +H L+LVC+ L++ + F+WSNAS F+N+S R+P + +P++ ++ A+ E+NR L+++A +LK+FL + GLWV ++VGS C Sbjct: 44 RLFDRQKPIHHVLGGGKSADVLLWRNKKISASVLMGATAIWVLFEWINFHFLSLVCYALLLGMIAQFVWSNASGFLNRSQSRVPRLVLPKDFFAEVGVAVGKEVNRGLLFLQDLACKGNLKQFLMAVIGLWVAAMVGSCC 183
BLAST of FC929894 vs. ExPASy Swiss-Prot
Match: RTNLI_ARATH (Reticulon-like protein B9 OS=Arabidopsis thaliana GN=RTNLB9 PE=2 SV=1) HSP 1 Score: 124.02 bits (310), Expect = 7.731e-28 Identity = 55/142 (38.73%), Postives = 87/142 (61.27%), Query Frame = 1 Query: 247 KVFRLFGREKPVHKVLGGGKPADVFLWRNKKISAGVLGGATAIWVLFQLLEYHLLTLVCHCLIVALAVLFLWSNASTFINKSPPRIPEVYIPEEPVLQLASALRFEINRAFTLLREIASGRDLKKFLSVIAGLWVVSIVGSW 672 K +LF R++ +H + GGGK AD+ LWR KI+A ++ G + +W L +++EY+ +TL+CH + ++ F+WS AS F+N P IPEV + E QLA + N+ T L ++A GRD F L++VSI+G++ Sbjct: 19 KTTKLFTRQRSIHSIFGGGKVADILLWREPKIAATLVIGVSILWFLMEVVEYNFITLICHASMTSMLFFFIWSTASDFLNWERPLIPEVVLDESSFKQLARSFHVRFNQILTKLLDVACGRDPPLFFLTTISLYIVSIIGTY 160
BLAST of FC929894 vs. ExPASy Swiss-Prot
Match: RTNLL_ARATH (Reticulon-like protein B12 OS=Arabidopsis thaliana GN=RTNLB12 PE=2 SV=1) HSP 1 Score: 110.153 bits (274), Expect = 1.155e-23 Identity = 48/138 (34.78%), Postives = 85/138 (61.59%), Query Frame = 1 Query: 256 RLFGREKPVHKVLGGGKPADVFLWRNKKISAGVLGGATAIWVLFQLLEYHLLTLVCHCLIVALAVLFLWSNASTFINKSPPRIPEVYIPEEPVLQLASALRFEINRAFTLLREIASGRDLKKFLSVIAGLWVVSIVGS 669 +LF R++ +H++LGGG ADV LWR K +S G++ A W++F+ Y + TL+ L++ L++LFLWS +++ +N+ P +PE I E + + LR +N+ + +IA RD + + V L+++S++GS Sbjct: 7 KLFNRDRTIHEILGGGIVADVMLWRKKNVSVGIVTVTIASWMVFEAFAYTIFTLISSVLLLLLSILFLWSKSASILNRPSPPLPEFQISEAMAEEASIWLRIHVNKLLQVSHDIAMARDSELYTKVAVSLFLLSLIGS 144 The following BLAST results are available for this feature:
BLAST of FC929894 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 15
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Sequences
The
following sequences are available for this feature:
EST sequence >FC929894 ID=FC929894; Name=FC929894; organism=Citrus clementina; type=EST; length=706bpback to top |