FC929895

Overview
NameFC929895
Unique NameFC929895
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length702
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15445 contig Ccv1_Contig15445:166..867. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC929895 vs. ExPASy Swiss-Prot
Match: TCPB_MACFA (T-complex protein 1 subunit beta OS=Macaca fascicularis GN=CCT2 PE=2 SV=3)

HSP 1 Score: 237.269 bits (604), Expect = 6.214e-62
Identity = 122/189 (64.55%), Postives = 151/189 (79.89%), Query Frame = 1
Query:  112 SMGVERIFRDEANEEKGERARMASFVGAMAIADLVKTTLGPKGMDKILQSTGRGREVTVTNDGATILKSLHIDNPAAKVLVDISKVQDDEVGDGTTSVVVLAGELLREAEKLVAAKIHPMTIISGFRMAAECARDALLQKVVDNKENAETFKSDLMKIAMTTLSSKILSQDKEHFGQLAVDAVMRLKGS 678
            S+    IF+  A+EE+ E AR+ SF+GA+AI DLVK+TLGPKGMDKIL S+GR   + VTNDGATILK++ +DNPAAKVLVD+S+VQDDEVGDGTTSV VLA ELLREAE L+A KIHP TII+G+R A + AR+ALL   VD+  +   F+ DLM IA TTLSSK+L+  K+HF +LAV+AV+RLKGS
Sbjct:    5 SLAPVNIFKAGADEERAETARLTSFIGAIAIGDLVKSTLGPKGMDKILLSSGRDASLMVTNDGATILKNIGVDNPAAKVLVDMSRVQDDEVGDGTTSVTVLAAELLREAESLIAKKIHPQTIIAGWREATKAAREALLSSAVDHGSDEVKFRQDLMNIAGTTLSSKLLTHHKDHFTKLAVEAVLRLKGS 193          
BLAST of FC929895 vs. ExPASy Swiss-Prot
Match: TCPB_HUMAN (T-complex protein 1 subunit beta OS=Homo sapiens GN=CCT2 PE=1 SV=4)

HSP 1 Score: 237.269 bits (604), Expect = 6.214e-62
Identity = 122/189 (64.55%), Postives = 151/189 (79.89%), Query Frame = 1
Query:  112 SMGVERIFRDEANEEKGERARMASFVGAMAIADLVKTTLGPKGMDKILQSTGRGREVTVTNDGATILKSLHIDNPAAKVLVDISKVQDDEVGDGTTSVVVLAGELLREAEKLVAAKIHPMTIISGFRMAAECARDALLQKVVDNKENAETFKSDLMKIAMTTLSSKILSQDKEHFGQLAVDAVMRLKGS 678
            S+    IF+  A+EE+ E AR+ SF+GA+AI DLVK+TLGPKGMDKIL S+GR   + VTNDGATILK++ +DNPAAKVLVD+S+VQDDEVGDGTTSV VLA ELLREAE L+A KIHP TII+G+R A + AR+ALL   VD+  +   F+ DLM IA TTLSSK+L+  K+HF +LAV+AV+RLKGS
Sbjct:    5 SLAPVNIFKAGADEERAETARLTSFIGAIAIGDLVKSTLGPKGMDKILLSSGRDASLMVTNDGATILKNIGVDNPAAKVLVDMSRVQDDEVGDGTTSVTVLAAELLREAESLIAKKIHPQTIIAGWREATKAAREALLSSAVDHGSDEVKFRQDLMNIAGTTLSSKLLTHHKDHFTKLAVEAVLRLKGS 193          
BLAST of FC929895 vs. ExPASy Swiss-Prot
Match: TCPB_MOUSE (T-complex protein 1 subunit beta OS=Mus musculus GN=Cct2 PE=1 SV=4)

HSP 1 Score: 236.884 bits (603), Expect = 8.116e-62
Identity = 123/189 (65.08%), Postives = 151/189 (79.89%), Query Frame = 1
Query:  112 SMGVERIFRDEANEEKGERARMASFVGAMAIADLVKTTLGPKGMDKILQSTGRGREVTVTNDGATILKSLHIDNPAAKVLVDISKVQDDEVGDGTTSVVVLAGELLREAEKLVAAKIHPMTIISGFRMAAECARDALLQKVVDNKENAETFKSDLMKIAMTTLSSKILSQDKEHFGQLAVDAVMRLKGS 678
            S+    IF+  A+EE+ E AR++SF+GA+AI DLVK+TLGPKGMDKIL S+GR   + VTNDGATILK++ +DNPAAKVLVD+S+VQDDEVGDGTTSV VLA ELLREAE L+A KIHP TIISG+R A + AR+ALL   VD+  +   F  DLM IA TTLSSK+L+  K+HF +LAV+AV+RLKGS
Sbjct:    5 SLAPVNIFKAGADEERAETARLSSFIGAIAIGDLVKSTLGPKGMDKILLSSGRDAALMVTNDGATILKNIGVDNPAAKVLVDMSRVQDDEVGDGTTSVTVLAAELLREAESLIAKKIHPQTIISGWREATKAAREALLSSAVDHGSDEARFWQDLMNIAGTTLSSKLLTHHKDHFTKLAVEAVLRLKGS 193          
BLAST of FC929895 vs. ExPASy Swiss-Prot
Match: TCPB_BOVIN (T-complex protein 1 subunit beta OS=Bos taurus GN=CCT2 PE=2 SV=3)

HSP 1 Score: 236.884 bits (603), Expect = 8.116e-62
Identity = 122/189 (64.55%), Postives = 151/189 (79.89%), Query Frame = 1
Query:  112 SMGVERIFRDEANEEKGERARMASFVGAMAIADLVKTTLGPKGMDKILQSTGRGREVTVTNDGATILKSLHIDNPAAKVLVDISKVQDDEVGDGTTSVVVLAGELLREAEKLVAAKIHPMTIISGFRMAAECARDALLQKVVDNKENAETFKSDLMKIAMTTLSSKILSQDKEHFGQLAVDAVMRLKGS 678
            S+    IF+  A+EE+ E AR++SF+GA+AI DLVK+TLGPKGMDKIL S+GR   + VTNDGATILK++ +DNPAAKVLVD+S+VQDDEVGDGTTSV VLA ELLREAE L+A KIHP TII+G+R A + AR ALL   VD+  +   F+ DLM IA TTLSSK+L+  K+HF +LAV+AV+RLKGS
Sbjct:    5 SLAPVNIFKAGADEERAETARLSSFIGAIAIGDLVKSTLGPKGMDKILLSSGRDASLMVTNDGATILKNIGVDNPAAKVLVDMSRVQDDEVGDGTTSVTVLAAELLREAESLIAKKIHPQTIIAGWREATKAARQALLNSAVDHGSDEVKFRQDLMNIAGTTLSSKLLTHHKDHFTKLAVEAVLRLKGS 193          
BLAST of FC929895 vs. ExPASy Swiss-Prot
Match: TCPB_SCHPO (Probable T-complex protein 1 subunit beta OS=Schizosaccharomyces pombe GN=cct2 PE=2 SV=1)

HSP 1 Score: 236.113 bits (601), Expect = 1.384e-61
Identity = 124/190 (65.26%), Postives = 149/190 (78.42%), Query Frame = 1
Query:  112 SMGVERIFRDEANEEKGERARMASFVGAMAIADLVKTTLGPKGMDKILQSTGRGREVTVTNDGATILKSLHIDNPAAKVLVDISKVQDDEVGDGTTSVVVLAGELLREAEKLVAAKIHPMTIISGFRMAAECARDALLQKVVDNKENAETFKSDLMKIAMTTLSSKILSQDKEHFGQLAVDAVMRLKGST 681
            S+   +IF +   +E+GE AR++SFVGA+A+ DLVK+TLGPKGMDKILQS   G ++ VTNDGATILKS+ +DN AAKVLV+ISKVQDDEVGDGTTSV V A ELLR+AE +V AKIHP  II G+R+A + A DAL    +DN  +   F+SDL  IA TTLSSKILSQ+K HF QLAVDAV+RLKGST
Sbjct:    2 SLNPHQIFNESGIQERGENARLSSFVGAIAVGDLVKSTLGPKGMDKILQSNSSG-DIVVTNDGATILKSIALDNAAAKVLVNISKVQDDEVGDGTTSVCVFAAELLRQAEIMVNAKIHPQVIIDGYRIATKTAIDALRASSIDNSSDPAKFRSDLENIARTTLSSKILSQNKNHFAQLAVDAVLRLKGST 190          
BLAST of FC929895 vs. ExPASy Swiss-Prot
Match: TCPB_RAT (T-complex protein 1 subunit beta OS=Rattus norvegicus GN=Cct2 PE=1 SV=3)

HSP 1 Score: 235.728 bits (600), Expect = 1.808e-61
Identity = 122/189 (64.55%), Postives = 151/189 (79.89%), Query Frame = 1
Query:  112 SMGVERIFRDEANEEKGERARMASFVGAMAIADLVKTTLGPKGMDKILQSTGRGREVTVTNDGATILKSLHIDNPAAKVLVDISKVQDDEVGDGTTSVVVLAGELLREAEKLVAAKIHPMTIISGFRMAAECARDALLQKVVDNKENAETFKSDLMKIAMTTLSSKILSQDKEHFGQLAVDAVMRLKGS 678
            S+    IF+  A+EE+ E AR++SF+GA+AI DLVK+TLGPKGMDKIL S+GR   + VTNDGATILK++ +DNPAAKVLVD+S+VQDDEVGDGTTSV VLA ELLREAE L+A KIHP TII+G+R A + AR+ALL   VD+  +   F  DLM IA TTLSSK+L+  K+HF +LAV+AV+RLKGS
Sbjct:    5 SLAPVNIFKAGADEERAETARLSSFIGAIAIGDLVKSTLGPKGMDKILLSSGRDASLMVTNDGATILKNIGVDNPAAKVLVDMSRVQDDEVGDGTTSVTVLAAELLREAESLIAKKIHPQTIIAGWREATKAAREALLSSAVDHGSDEVKFWQDLMNIAGTTLSSKLLTHHKDHFTKLAVEAVLRLKGS 193          
BLAST of FC929895 vs. ExPASy Swiss-Prot
Match: TCPB_YEAST (T-complex protein 1 subunit beta OS=Saccharomyces cerevisiae GN=CCT2 PE=1 SV=1)

HSP 1 Score: 233.802 bits (595), Expect = 6.871e-61
Identity = 121/186 (65.05%), Postives = 149/186 (80.11%), Query Frame = 1
Query:  127 RIFRDEANEEKGERARMASFVGAMAIADLVKTTLGPKGMDKILQSTGRGREVTVTNDGATILKSLHIDNPAAKVLVDISKVQDDEVGDGTTSVVVLAGELLREAEKLV-AAKIHPMTIISGFRMAAECARDALLQKVVDNKENAETFKSDLMKIAMTTLSSKILSQDKEHFGQLAVDAVMRLKGST 681
            +IF D+  EE+ E AR+++FVGA+A+ DLVK+TLGPKGMDK+LQS        VTNDGATILKS+ +DNPAAKVLV+ISKVQDDEVGDGTTSV VL+ ELLREAEKL+  +KIHP TII G+R+A+  A DAL +  VDN  +   F+ DL+ IA TTLSSKILSQDK+HF +LA +A++RLKGST
Sbjct:    4 QIFGDQVTEERAENARLSAFVGAIAVGDLVKSTLGPKGMDKLLQSAS-SNTCMVTNDGATILKSIPLDNPAAKVLVNISKVQDDEVGDGTTSVTVLSAELLREAEKLIDQSKIHPQTIIEGYRLASAAALDALTKAAVDNSHDKTMFREDLIHIAKTTLSSKILSQDKDHFAELATNAILRLKGST 188          
BLAST of FC929895 vs. ExPASy Swiss-Prot
Match: TCPB_DICDI (T-complex protein 1 subunit beta OS=Dictyostelium discoideum GN=cct2 PE=1 SV=1)

HSP 1 Score: 229.95 bits (585), Expect = 9.922e-60
Identity = 117/184 (63.59%), Postives = 141/184 (76.63%), Query Frame = 1
Query:  130 IFRDEANEEKGERARMASFVGAMAIADLVKTTLGPKGMDKILQSTGRGREVTVTNDGATILKSLHIDNPAAKVLVDISKVQDDEVGDGTTSVVVLAGELLREAEKLVAAKIHPMTIISGFRMAAECARDALLQKVVDNKENAETFKSDLMKIAMTTLSSKILSQDKEHFGQLAVDAVMRLKGST 681
            I    A+EE+GE AR++SFVGA+AI DLVKTTLGPKGMDKIL S     E+ +TNDGATIL  ++IDNPAAK+LVDIS+ QDDEVGDGTTSV VLAGELLRE E+LV  K+HP TIISG+R+A E AR AL     D+  +   F+ DL+ IA TTLSSKIL  +K+HF  + VDAV+RL G+T
Sbjct:   10 ILNQNASEERGEIARLSSFVGAIAITDLVKTTLGPKGMDKILISASNPNELIITNDGATILTKIYIDNPAAKILVDISRTQDDEVGDGTTSVCVLAGELLREGERLVQQKVHPQTIISGWRLALETARAALQSSTQDHSSDKVKFREDLLNIARTTLSSKILHTEKDHFANMVVDAVLRLNGNT 193          
BLAST of FC929895 vs. ExPASy Swiss-Prot
Match: TCPB_CAEEL (T-complex protein 1 subunit beta OS=Caenorhabditis elegans GN=cct-2 PE=2 SV=2)

HSP 1 Score: 221.861 bits (564), Expect = 2.702e-57
Identity = 120/186 (64.52%), Postives = 145/186 (77.96%), Query Frame = 1
Query:  127 RIFRDEANEEKGERARMASFVGAMAIADLVKTTLGPKGMDKILQSTG--RGREVTVTNDGATILKSLHIDNPAAKVLVDISKVQDDEVGDGTTSVVVLAGELLREAEKLVAAKIHPMTIISGFRMAAECARDALLQKVVDNKENAETFKSDLMKIAMTTLSSKILSQDKEHFGQLAVDAVMRLKGS 678
            +I +D A EE+GE AR++SFVGA+AI DLVK+TLGPKGMDKIL S        + VTNDGATILKS+ +DNPAAKVLVD+S  QD EVGDGTTSV VLA ELL+EAEKLV  +IHP TIISG+R A   A+++L +  +++ +N    + DL+KIA TTL SKILSQ KEHF QLAVDAV+RLKGS
Sbjct:    5 QILKDNAQEERGESARLSSFVGAIAIGDLVKSTLGPKGMDKILISGNPESAGGIKVTNDGATILKSIGVDNPAAKVLVDMSMTQDHEVGDGTTSVTVLAAELLKEAEKLVNQRIHPQTIISGYRRALGIAQESLKKSSIESGDN---IRDDLLKIARTTLGSKILSQHKEHFAQLAVDAVLRLKGS 187          
BLAST of FC929895 vs. ExPASy Swiss-Prot
Match: TCPH_PLAF7 (T-complex protein 1 subunit eta OS=Plasmodium falciparum (isolate 3D7) GN=PFC0350c PE=3 SV=1)

HSP 1 Score: 153.68 bits (387), Expect = 9.036e-37
Identity = 85/181 (46.96%), Postives = 122/181 (67.40%), Query Frame = 1
Query:  130 IFRDEANEEKGERARMASFVGAMAIADLVKTTLGPKGMDKILQSTGRGREVTVTNDGATILKSLHIDNPAAKVLVDISKVQDDEVGDGTTSVVVLAGELLREAEKLVAAKIHPMTIISGFRMAAECARDALLQKVVD-NKENAETFKSDLMKIAMTTLSSKILSQDKEHFGQLAVDAVMRL 669
            + ++  +  +G    + +      I D+VKTTLGP+GMDK++ +    R+VT+TNDGAT++  L+I +PAA +LVDI+K QDDEVGDGTTSVVV+AGELL EA+ L+   I P  II GFR A   A + L +  ++ + +N E  +S L+K A T L+SK++S  KE FG+L V+AV +L
Sbjct:   11 LLKEGTDTAQGRSQIIRNINACQIIVDIVKTTLGPRGMDKLIYTE---RDVTITNDGATVMNLLNISHPAASILVDIAKSQDDEVGDGTTSVVVVAGELLNEAKGLLNDGIEPNMIIDGFRNACNVAINKLNELSLNFSNKNEEEKRSILLKCAQTALNSKLVSNHKEFFGELVVNAVYKL 188          
The following BLAST results are available for this feature:
BLAST of FC929895 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
TCPB_MACFA6.214e-6264.55T-complex protein 1 subunit beta OS=Macaca fascicu... [more]
TCPB_HUMAN6.214e-6264.55T-complex protein 1 subunit beta OS=Homo sapiens G... [more]
TCPB_MOUSE8.116e-6265.08T-complex protein 1 subunit beta OS=Mus musculus G... [more]
TCPB_BOVIN8.116e-6264.55T-complex protein 1 subunit beta OS=Bos taurus GN=... [more]
TCPB_SCHPO1.384e-6165.26Probable T-complex protein 1 subunit beta OS=Schiz... [more]
TCPB_RAT1.808e-6164.55T-complex protein 1 subunit beta OS=Rattus norvegi... [more]
TCPB_YEAST6.871e-6165.05T-complex protein 1 subunit beta OS=Saccharomyces ... [more]
TCPB_DICDI9.922e-6063.59T-complex protein 1 subunit beta OS=Dictyostelium ... [more]
TCPB_CAEEL2.702e-5764.52T-complex protein 1 subunit beta OS=Caenorhabditis... [more]
TCPH_PLAF79.036e-3746.96T-complex protein 1 subunit eta OS=Plasmodium falc... [more]

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Properties
Property NameValue
Genbank descriptionC34001F02EF PostHarvC1 Citrus clementina cDNA clone C34001F02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929895 ID=FC929895; Name=FC929895; organism=Citrus clementina; type=EST; length=702bp
GAGTTTCGGCGGGATCCGAGTATCAAAACCTAGCAGGGTCGAACATCACC
GGTTTAAGATCAGGGTTTCATTTTAGCATCCAGGTTTTAGTTGCCTTCAT
TTACATTTTCTTCGATGGGGGTAGAGAGAATTTTTAGAGATGAAGCTAAC
GAAGAGAAAGGAGAGCGTGCCAGAATGGCATCATTTGTTGGTGCAATGGC
AATTGCTGACTTGGTTAAGACAACCTTAGGGCCAAAGGGAATGGATAAAA
TTCTACAGTCAACCGGCAGAGGACGTGAAGTCACTGTTACGAATGACGGG
GCCACTATACTTAAGTCCCTACACATTGATAATCCAGCTGCTAAAGTCCT
TGTTGACATCTCTAAGGTTCAGGATGATGAAGTTGGTGATGGGACAACTT
CAGTTGTTGTTTTGGCTGGGGAGCTTCTGAGGGAGGCAGAGAAGCTGGTG
GCTGCTAAGATTCACCCAATGACCATAATATCAGGTTTCCGGATGGCAGC
TGAATGCGCTCGCGATGCTTTGTTGCAAAAGGTTGTGGATAACAAAGAGA
ATGCAGAAACATTCAAGTCAGACTTGATGAAGATTGCGATGACTACTTTG
AGTTCAAAAATTCTCTCACAGGATAAAGAACATTTTGGTCAACTGGCTGT
GGATGCTGTTATGAGGCTTAAGGGCAGCACAATTTAGAGTCCATCCAATT
AT
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