FC929906

Overview
NameFC929906
Unique NameFC929906
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length690
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC929906_ssr17 microsatellite FC929906_ssr17:17..34. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig15402 contig Ccv1_Contig15402:4..693. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC929906 vs. ExPASy Swiss-Prot
Match: Y0010_DICDI (Probable serine/threonine-protein kinase DDB_G0279405 OS=Dictyostelium discoideum GN=DDB_G0279405 PE=3 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 8.965e-34
Identity = 79/175 (45.14%), Postives = 104/175 (59.43%), Query Frame = 2
Query:  167 KESNKLIRSEDENGTKMINEYVHVRKIGAGSYGKVVLYRSSLDGKHYAIKAFHKSHLSKLRVAPSE-TAMTDVRREVLIMKMLQHPNIVNLIEVIDDPNSDHFYMVLEYVEGKWDNDGFGQPGAIGESMARKYLRDIVSGLMYLHGHNVVHGDIKPDNLLVAPSGTVKIGDFSVS 688
            KE+ +  +   ++G KM+NEYV VRK+G G++GKV L         YAIK F+K  L K  +      A  DV +E+ IMK + H N+V L EVI+DP  ++ Y+V+EY+EG              E +ARKY RDIV GL YLH   V+H D+KP+NLLV   G VKI DF VS
Sbjct:  181 KETLRAHKKRHKDGHKMVNEYVFVRKLGKGTFGKVKLAYHHDTHHLYAIKIFNKIRLKKQTMGIGRPNAFDDVLKEIAIMKKMNHINVVKLYEVINDPQEEYIYIVMEYIEG----GSIMSANETSEDLARKYFRDIVFGLEYLHEQKVIHKDLKPENLLVNSEGVVKITDFGVS 351          
BLAST of FC929906 vs. ExPASy Swiss-Prot
Match: SSP1_SCHPO (Serine/threonine-protein kinase ssp1 OS=Schizosaccharomyces pombe GN=ssp1 PE=1 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 2.526e-28
Identity = 77/180 (42.78%), Postives = 105/180 (58.33%), Query Frame = 2
Query:  164 VKESNKLIRSEDE-NGTKMINEYVHVRKIGAGSYGKVVLYRSSLDGKHYAIKAFHKSHLS-KLRVAPSETAMTDVRREVLIMKMLQHPNIVNLIEVIDDPNSDHFYMVLEYVEG---KWDNDGFGQPGAIGESMARKYLRDIVSGLMYLHGHNVVHGDIKPDNLLVAPSGTVKIGDFSVS 688
            VKE+ K+ +  D  +G K IN Y  ++++G G +GKV L R ++  +  AIK   K+    KL  A + +    VRRE+ I+K   HPN+V L EVIDDP+S   Y+VLEY+ G    W +        +  S AR+Y RD+V GL YLH   ++H DIKP NLL+  S  VKI DF VS
Sbjct:  113 VKETKKIRKRFDRFSGRKYINHYEIIKELGRGMHGKVKLGRDTVTRELLAIKIIPKTERRPKLGRANASSQKEKVRREIAILKKCVHPNVVRLREVIDDPSSTKVYLVLEYMSGGEVPWTDC---DSPVLSISEARQYFRDVVLGLEYLHYQGIIHRDIKPANLLLNSSNCVKISDFGVS 289          
BLAST of FC929906 vs. ExPASy Swiss-Prot
Match: KKCC2_RAT (Calcium/calmodulin-dependent protein kinase kinase 2 OS=Rattus norvegicus GN=Camkk2 PE=1 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.533e-25
Identity = 69/175 (39.43%), Postives = 93/175 (53.14%), Query Frame = 2
Query:  218 INEYVHVRKIGAGSYGKVVLYRSSLDGKHYAIKAFHKSHLSK------------LRVAPS-----ETAMTDVRREVLIMKMLQHPNIVNLIEVIDDPNSDHFYMVLEYV-EGKWDNDGFGQPGAIGESMARKYLRDIVSGLMYLHGHNVVHGDIKPDNLLVAPSGTVKIGDFSVS 688
            +N+Y    +IG GSYG V L  +  D  +YA+K   K  L +             R AP         +  V +E+ I+K L HPN+V L+EV+DDPN DH YMV E V +G        +P  + E  AR Y +D++ G+ YLH   ++H DIKP NLLV   G +KI DF VS
Sbjct:  161 LNQYTLKDEIGKGSYGVVKLAYNENDNTYYAMKVLSKKKLIRQAGFPRRPPPRGTRPAPGGCIQPRGPIEQVYQEIAILKKLDHPNVVKLVEVLDDPNEDHLYMVFELVNQGPVMEVPTLKP--LSEDQARFYFQDLIKGIEYLHYQKIIHRDIKPSNLLVGEDGHIKIADFGVS 333          
BLAST of FC929906 vs. ExPASy Swiss-Prot
Match: KKCC2_MOUSE (Calcium/calmodulin-dependent protein kinase kinase 2 OS=Mus musculus GN=Camkk2 PE=1 SV=2)

HSP 1 Score: 116.316 bits (290), Expect = 1.533e-25
Identity = 69/175 (39.43%), Postives = 93/175 (53.14%), Query Frame = 2
Query:  218 INEYVHVRKIGAGSYGKVVLYRSSLDGKHYAIKAFHKSHLSK------------LRVAPS-----ETAMTDVRREVLIMKMLQHPNIVNLIEVIDDPNSDHFYMVLEYV-EGKWDNDGFGQPGAIGESMARKYLRDIVSGLMYLHGHNVVHGDIKPDNLLVAPSGTVKIGDFSVS 688
            +N+Y    +IG GSYG V L  +  D  +YA+K   K  L +             R AP         +  V +E+ I+K L HPN+V L+EV+DDPN DH YMV E V +G        +P  + E  AR Y +D++ G+ YLH   ++H DIKP NLLV   G +KI DF VS
Sbjct:  162 LNQYTLKDEIGKGSYGVVKLAYNENDNTYYAMKVLSKKKLIRQAGFPRRPPPRGARPAPGGCIQPRGPIEQVYQEIAILKKLDHPNVVKLVEVLDDPNEDHLYMVFELVNQGPVMEVPTLKP--LSEDQARFYFQDLIKGIEYLHYQKIIHRDIKPSNLLVGEDGHIKIADFGVS 334          
BLAST of FC929906 vs. ExPASy Swiss-Prot
Match: KKCC2_HUMAN (Calcium/calmodulin-dependent protein kinase kinase 2 OS=Homo sapiens GN=CAMKK2 PE=1 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.533e-25
Identity = 69/175 (39.43%), Postives = 93/175 (53.14%), Query Frame = 2
Query:  218 INEYVHVRKIGAGSYGKVVLYRSSLDGKHYAIKAFHKSHLSK------------LRVAPS-----ETAMTDVRREVLIMKMLQHPNIVNLIEVIDDPNSDHFYMVLEYV-EGKWDNDGFGQPGAIGESMARKYLRDIVSGLMYLHGHNVVHGDIKPDNLLVAPSGTVKIGDFSVS 688
            +N+Y    +IG GSYG V L  +  D  +YA+K   K  L +             R AP         +  V +E+ I+K L HPN+V L+EV+DDPN DH YMV E V +G        +P  + E  AR Y +D++ G+ YLH   ++H DIKP NLLV   G +KI DF VS
Sbjct:  162 LNQYTLKDEIGKGSYGVVKLAYNENDNTYYAMKVLSKKKLIRQAGFPRRPPPRGTRPAPGGCIQPRGPIEQVYQEIAILKKLDHPNVVKLVEVLDDPNEDHLYMVFELVNQGPVMEVPTLKP--LSEDQARFYFQDLIKGIEYLHYQKIIHRDIKPSNLLVGEDGHIKIADFGVS 334          
BLAST of FC929906 vs. ExPASy Swiss-Prot
Match: PAK1_YEAST (Serine/threonine-protein kinase PAK1 OS=Saccharomyces cerevisiae GN=PAK1 PE=1 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 9.935e-25
Identity = 75/191 (39.27%), Postives = 108/191 (56.54%), Query Frame = 2
Query:  164 VKESNKLIRSEDE-NGTKMINEYVHVRKIGAGSYGKVVLYRSSLDGKHYAIKAFHKSHLSKLR-----VAPSETAMTD-VRREVLIMKMLQHPNIVNLIEVIDDPNSDHFYMVLEYV---EGKW------DNDGFGQPGAIGESMARKYLRDIVSGLMYLHGHNVVHGDIKPDNLLVAPSGTVKIGDFSVS 688
            VKE+N++  + D  +  K++N Y  ++++G G +GKV L R  L  +  AIK   + H  K R     +  S+ +  D ++RE+ IMK   H ++V LIEV+DD  S   Y+VLEY    E KW      ++D  G P  +     R+ LR +V GL YLH   ++H DIKP NLL++  GTVKI DF VS
Sbjct:  111 VKETNRISLTYDPVSKRKVLNTYEIIKELGHGQHGKVKLARDILSKQLVAIKIVDR-HEKKQRKFFTFIKSSKISENDKIKREIAIMKKCHHKHVVQLIEVLDDLKSRKIYLVLEYCSRGEVKWCPPDCMESDAKG-PSLLSFQETREILRGVVLGLEYLHYQGIIHRDIKPANLLISGDGTVKISDFGVS 299          
BLAST of FC929906 vs. ExPASy Swiss-Prot
Match: KKCC1_MOUSE (Calcium/calmodulin-dependent protein kinase kinase 1 OS=Mus musculus GN=Camkk1 PE=1 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 4.931e-24
Identity = 74/194 (38.14%), Postives = 103/194 (53.09%), Query Frame = 2
Query:  161 PVKESNKLIRSEDENGTKMINEYVHVRKIGAGSYGKVVLYRSSLDGKHYAIKAFHKSHLSKL-----RVAPSETAMTD------------VRREVLIMKMLQHPNIVNLIEVIDDPNSDHFYMVLEYV-EGKWDNDGFGQPGAIGESMARKYLRDIVSGLMYLHGHNVVHGDIKPDNLLVAPSGTVKIGDFSVS 688
            P  ES+++  S+ E+  ++ N+Y    +IG G+YG V L  +  + +HYA+K   K  L K      R  P  +  T             V +E+ I+K L H N+V LIEV+DDP  D+ Y+V + + +G        +P    E  AR YLRDI+ GL YLH   +VH DIKP NLL+   G VKI DF VS
Sbjct:  107 PTIESHRVAISDTEDCVQL-NQYKLQSEIGKGAYGVVRLAYNESEDRHYAMKVLSKKKLLKQYGFPRRPPPRGSQATQGGPAKQLLPLERVYQEIAILKKLDHVNVVKLIEVLDDPAEDNLYLVFDLLRKGPVMEVPCDKP--FPEEQARLYLRDIILGLEYLHCQKIVHRDIKPSNLLLGDDGHVKIADFGVS 297          
BLAST of FC929906 vs. ExPASy Swiss-Prot
Match: KKCC1_HUMAN (Calcium/calmodulin-dependent protein kinase kinase 1 OS=Homo sapiens GN=CAMKK1 PE=1 SV=2)

HSP 1 Score: 109.768 bits (273), Expect = 1.435e-23
Identity = 73/194 (37.63%), Postives = 103/194 (53.09%), Query Frame = 2
Query:  161 PVKESNKLIRSEDENGTKMINEYVHVRKIGAGSYGKVVLYRSSLDGKHYAIKAFHKSHLSKLRVAP-------SETA----------MTDVRREVLIMKMLQHPNIVNLIEVIDDPNSDHFYMVLEYV-EGKWDNDGFGQPGAIGESMARKYLRDIVSGLMYLHGHNVVHGDIKPDNLLVAPSGTVKIGDFSVS 688
            P  ES+ +  S+ E+  ++ N+Y    +IG G+YG V L  +  + +HYA+K   K  L K    P       S+ A          +  V +E+ I+K L H N+V LIEV+DDP  D+ Y+V + + +G        +P    E  AR YLRD++ GL YLH   +VH DIKP NLL+   G VKI DF VS
Sbjct:  107 PTIESHHVAISDAEDCVQL-NQYKLQSEIGKGAYGVVRLAYNESEDRHYAMKVLSKKKLLKQYGFPRRPPPRGSQAAQGGPAKQLLPLERVYQEIAILKKLDHVNVVKLIEVLDDPAEDNLYLVFDLLRKGPVMEVPCDKP--FSEEQARLYLRDVILGLEYLHCQKIVHRDIKPSNLLLGDDGHVKIADFGVS 297          
BLAST of FC929906 vs. ExPASy Swiss-Prot
Match: KKCC1_RAT (Calcium/calmodulin-dependent protein kinase kinase 1 OS=Rattus norvegicus GN=Camkk1 PE=1 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 2.447e-23
Identity = 72/194 (37.11%), Postives = 100/194 (51.55%), Query Frame = 2
Query:  161 PVKESNKLIRSEDENGTKMINEYVHVRKIGAGSYGKVVLYRSSLDGKHYAIKAFHKSHLSKLRVAPSETA-----------------MTDVRREVLIMKMLQHPNIVNLIEVIDDPNSDHFYMVLEYV-EGKWDNDGFGQPGAIGESMARKYLRDIVSGLMYLHGHNVVHGDIKPDNLLVAPSGTVKIGDFSVS 688
            P  ES+ +  S+ E+  ++ N+Y    +IG G+YG V L  +  + +HYA+K   K  L K    P                     +  V +E+ I+K L H N+V LIEV+DDP  D+ Y+V + + +G        +P    E  AR YLRDI+ GL YLH   +VH DIKP NLL+   G VKI DF VS
Sbjct:  107 PTIESHHVAISDTEDCVQL-NQYKLQSEIGKGAYGVVRLAYNEREDRHYAMKVLSKKKLLKQYGFPRRPPPRGSQAPQGGPAKQLLPLERVYQEIAILKKLDHVNVVKLIEVLDDPAEDNLYLVFDLLRKGPVMEVPCDKP--FPEEQARLYLRDIILGLEYLHCQKIVHRDIKPSNLLLGDDGHVKIADFGVS 297          
BLAST of FC929906 vs. ExPASy Swiss-Prot
Match: TOS3_YEAST (Serine/threonine-protein kinase TOS3 OS=Saccharomyces cerevisiae GN=TOS3 PE=1 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 2.705e-22
Identity = 61/167 (36.53%), Postives = 90/167 (53.89%), Query Frame = 2
Query:  212 KMINEYVHVRKIGAGSYGKVVLYRSSLDGKHYAIKAFHKSHLSKLRVAPSETAMTDVRREVLIMKMLQHPNIVNLIEVIDDPNSDHFYMVLEYVEG---KWDNDGFGQPGAIGESM-----ARKYLRDIVSGLMYLHGHNVVHGDIKPDNLLVAPSGTVKIGDFSVS 688
            +++N +  +  +G G YGKV L R    G   AIK  ++           +     V +E+ +MK   H N+V L E+++DP S   Y+VLEY      KW  +   +  A+G S+     +RK + D+VSGL YLH   + H DIKP NLL++ +GTVKI DF V+
Sbjct:   45 QILNNFEILATLGNGQYGKVKLARDLGTGALVAIKILNRFEKRSGYSLQLKVENPRVNQEIEVMKRCHHENVVELYEILNDPESTKVYLVLEYCSRGPVKWCPENKMEIKAVGPSILTFQQSRKVVLDVVSGLEYLHSQGITHRDIKPSNLLISSNGTVKISDFGVA 211          
The following BLAST results are available for this feature:
BLAST of FC929906 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
Y0010_DICDI8.965e-3445.14Probable serine/threonine-protein kinase DDB_G0279... [more]
SSP1_SCHPO2.526e-2842.78Serine/threonine-protein kinase ssp1 OS=Schizosacc... [more]
KKCC2_RAT1.533e-2539.43Calcium/calmodulin-dependent protein kinase kinase... [more]
KKCC2_MOUSE1.533e-2539.43Calcium/calmodulin-dependent protein kinase kinase... [more]
KKCC2_HUMAN1.533e-2539.43Calcium/calmodulin-dependent protein kinase kinase... [more]
PAK1_YEAST9.935e-2539.27Serine/threonine-protein kinase PAK1 OS=Saccharomy... [more]
KKCC1_MOUSE4.931e-2438.14Calcium/calmodulin-dependent protein kinase kinase... [more]
KKCC1_HUMAN1.435e-2337.63Calcium/calmodulin-dependent protein kinase kinase... [more]
KKCC1_RAT2.447e-2337.11Calcium/calmodulin-dependent protein kinase kinase... [more]
TOS3_YEAST2.705e-2236.53Serine/threonine-protein kinase TOS3 OS=Saccharomy... [more]

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Properties
Property NameValue
Genbank descriptionC34001G01EF PostHarvC1 Citrus clementina cDNA clone C34001G01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929906 ID=FC929906; Name=FC929906; organism=Citrus clementina; type=EST; length=690bp
GTTAGGAGATGATATAGATGATGATGATGATGATAATTCATACAACGGCG
AGGCTACTAATACAGCAGATGGAGATGGTGGTGAGATGCAGAACCATGCC
AAACGATCTGAAGAGATTTTTAGGGAAAGAGAACTGAATGGACTGATTTG
CAGGCAATTTCCAGTTAAGGAATCTAATAAACTCATTCGATCAGAGGATG
AAAATGGGACTAAGATGATCAATGAGTATGTACATGTACGTAAGATTGGT
GCCGGTAGCTATGGGAAAGTGGTCCTTTATCGAAGCTCCTTAGATGGAAA
GCATTATGCAATTAAGGCTTTTCATAAGTCTCATTTGTCAAAGCTGCGAG
TTGCCCCTTCAGAGACGGCTATGACTGATGTTCGTCGTGAGGTTCTAATC
ATGAAAATGTTGCAACATCCAAATATAGTTAATCTGATTGAGGTGATTGA
TGACCCAAACTCAGATCACTTCTACATGGTTCTTGAATATGTGGAAGGAA
AATGGGACAATGATGGGTTTGGTCAACCAGGGGCCATTGGAGAGAGTATG
GCTAGAAAGTATTTGCGGGACATAGTATCTGGGTTGATGTACCTGCATGG
ACATAATGTAGTGCATGGAGACATAAAACCCGATAATCTGTTAGTTGCGC
CGAGTGGTACAGTGAAGATTGGAGATTTTAGTGTCAGCCA
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