FC929921

Overview
NameFC929921
Unique NameFC929921
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length714
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15065 contig Ccv1_Contig15065:1..714. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of FC929921 vs. ExPASy Swiss-Prot
Match: CCI1_ARATH (Cycloeucalenol cycloisomerase OS=Arabidopsis thaliana GN=CPI1 PE=2 SV=1)

HSP 1 Score: 301.597 bits (771), Expect = 2.716e-81
Identity = 139/185 (75.14%), Postives = 153/185 (82.70%), Query Frame = 3 
Query:  153 SSTSSLWLAPNPSKRWAELFFLGYTPFWLTLCLGIIVPYKXXXXXXXXXXXXXXXVSAVPSFLIPLLFVGKADSCLGLKDRFWIKANLWIIIFSYVGNYFWTHYFFTVLGASYTFPSWKMNNVPHTTFLLTHVCFLFYHVASNLTLRRIRHSVADLPDKIQLAVEAGWILVLSYFIAYLETLAIS 707
            SS+ SLWLAPNPSKRW ELFFL YTPFWLTLCLGI+VPYK               VSAVP+F+IP+L VGKAD  L  KDR+W+KANLWII+FSYVGNYFWTHYFF VLGASYTFPSWKMNNVPHTTF LTHVCFLFYHVASN+TLRR+RHS ADLPD ++   EA WIL LSYFIAYLET+AI+
Sbjct:    4 SSSPSLWLAPNPSKRWGELFFLFYTPFWLTLCLGIVVPYKLYETFTELEYLLLALVSAVPAFVIPMLLVGKADRSLCWKDRYWVKANLWIIVFSYVGNYFWTHYFFKVLGASYTFPSWKMNNVPHTTFFLTHVCFLFYHVASNITLRRLRHSTADLPDSLKWCFEAAWILALSYFIAYLETIAIA 188
The following BLAST results are available for this feature:
BLAST of FC929921 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
CCI1_ARATH2.716e-8175.14Cycloeucalenol cycloisomerase OS=Arabidopsis thali... [more]
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Properties
Property NameValue
Genbank descriptionC34001H04EF PostHarvC1 Citrus clementina cDNA clone C34001H04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929921 ID=FC929921; Name=FC929921; organism=Citrus clementina; type=EST; length=714bp
GGCAGTAACACCACCGGCGCATCATTGACACGATCCTGAAGCTCTCGCGT
GCTCCTCAGTGGTCACTTCACTTGACTTTGAGAAAGATCACAGTGAAATC
AACACTCCTCAATCTGTGATCCAAAATGGGCGTTGCAGAATTGGATGGTT
CTAGTTCTACTTCCAGTTTGTGGTTGGCTCCGAATCCGAGCAAGCGATGG
GCCGAGCTCTTCTTCCTCGGCTACACACCGTTTTGGCTCACCCTCTGTCT
CGGAATCATTGTTCCCTACAAGCTCTACGAGACTTTTACGGAACTGGAGT
ATTTGCTGCTGGGTTTGGTATCGGCAGTTCCTTCTTTCTTGATACCGCTG
CTATTTGTTGGAAAGGCTGACAGCTGCCTGGGTTTGAAGGATCGTTTTTG
GATCAAGGCAAATCTGTGGATAATTATTTTCAGTTACGTTGGCAATTACT
TTTGGACCCACTATTTCTTCACGGTTCTGGGGGCTTCCTATACATTTCCA
TCATGGAAGATGAACAATGTACCTCACACAACTTTCCTTCTCACACATGT
CTGCTTTTTGTTTTACCATGTTGCTTCAAATTTGACACTTCGGAGAATAC
GGCATTCTGTTGCTGACTTGCCAGATAAAATTCAGTTGGCTGTTGAGGCT
GGATGGATTTTGGTTCTTTCTTACTTTATAGCATACCTGGAAACATTAGC
CATTTCCATTTCCC
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