FC929936

Overview
NameFC929936
Unique NameFC929936
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length671
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC929936_ssr184 microsatellite FC929936_ssr184:184..195. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig15067 contig Ccv1_Contig15067:1..672. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC929936 vs. ExPASy Swiss-Prot
Match: TSAP1_RAT (tRNA selenocysteine 1-associated protein 1 OS=Rattus norvegicus GN=Trnau1ap PE=1 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 2.401e-20
Identity = 51/114 (44.74%), Postives = 75/114 (65.79%), Query Frame = 2
Query:  317 SLWIGDLQPWMEESYIASIFGHTGEFV-SGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMP--STEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQE 649
            SLW+GDL+P+M+E++I+  F   GE V S K+IRN+ T    GY F+EF   A AE+ L   NG  +P  +  + F+LN+ATYG   ++ D+ P++++FVGDL  DV D +L E
Sbjct:    4 SLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKRFKLNYATYG---KQPDNSPEYSLFVGDLTPDVDDGMLYE 114          
BLAST of FC929936 vs. ExPASy Swiss-Prot
Match: TSAP1_MOUSE (tRNA selenocysteine 1-associated protein 1 OS=Mus musculus GN=Trnau1ap PE=1 SV=2)

HSP 1 Score: 98.9821 bits (245), Expect = 2.401e-20
Identity = 51/114 (44.74%), Postives = 75/114 (65.79%), Query Frame = 2
Query:  317 SLWIGDLQPWMEESYIASIFGHTGEFV-SGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMP--STEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQE 649
            SLW+GDL+P+M+E++I+  F   GE V S K+IRN+ T    GY F+EF   A AE+ L   NG  +P  +  + F+LN+ATYG   ++ D+ P++++FVGDL  DV D +L E
Sbjct:    4 SLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKRFKLNYATYG---KQPDNSPEYSLFVGDLTPDVDDGMLYE 114          
BLAST of FC929936 vs. ExPASy Swiss-Prot
Match: TSAP1_HUMAN (tRNA selenocysteine 1-associated protein 1 OS=Homo sapiens GN=TRNAU1AP PE=1 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 2.401e-20
Identity = 51/114 (44.74%), Postives = 75/114 (65.79%), Query Frame = 2
Query:  317 SLWIGDLQPWMEESYIASIFGHTGEFV-SGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMP--STEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQE 649
            SLW+GDL+P+M+E++I+  F   GE V S K+IRN+ T    GY F+EF   A AE+ L   NG  +P  +  + F+LN+ATYG   ++ D+ P++++FVGDL  DV D +L E
Sbjct:    4 SLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKRFKLNYATYG---KQPDNSPEYSLFVGDLTPDVDDGMLYE 114          
BLAST of FC929936 vs. ExPASy Swiss-Prot
Match: TSAP1_BOVIN (tRNA selenocysteine 1-associated protein 1 OS=Bos taurus GN=TRNAU1AP PE=2 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 2.401e-20
Identity = 51/114 (44.74%), Postives = 75/114 (65.79%), Query Frame = 2
Query:  317 SLWIGDLQPWMEESYIASIFGHTGEFV-SGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMP--STEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQE 649
            SLW+GDL+P+M+E++I+  F   GE V S K+IRN+ T    GY F+EF   A AE+ L   NG  +P  +  + F+LN+ATYG   ++ D+ P++++FVGDL  DV D +L E
Sbjct:    4 SLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKRFKLNYATYG---KQPDNSPEYSLFVGDLTPDVDDGMLYE 114          
BLAST of FC929936 vs. ExPASy Swiss-Prot
Match: TSAP1_PONAB (tRNA selenocysteine 1-associated protein 1 OS=Pongo abelii GN=TRNAU1AP PE=2 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 6.987e-20
Identity = 50/114 (43.86%), Postives = 74/114 (64.91%), Query Frame = 2
Query:  317 SLWIGDLQPWMEESYIASIFGHTGEFV-SGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMP--STEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQE 649
            SLW+GDL+P+M+E++I+  F   GE V S K+IRN+ T    GY F+EF   A AE+ L   NG  +P  +  + F+LN+ TYG   ++ D+ P++++FVGDL  DV D +L E
Sbjct:    4 SLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKRFKLNYVTYG---KQPDNSPEYSLFVGDLTPDVDDGMLYE 114          
BLAST of FC929936 vs. ExPASy Swiss-Prot
Match: TSP1L_DANRE (tRNA selenocysteine 1-associated protein 1-like OS=Danio rerio GN=trnau1apl PE=2 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.192e-19
Identity = 48/114 (42.11%), Postives = 73/114 (64.04%), Query Frame = 2
Query:  317 SLWIGDLQPWMEESYIASIFGHTGEFVSG-KVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTE--QNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQE 649
            SLW+GDL P+M+E++I   F   GE   G K+I ++ T  S GY F+E    A+ +R +Q  NG  +P +   + F+LN+ATYG   +R + GP+F++FVGDL ++V DY L +
Sbjct:    7 SLWMGDLDPYMDENFIKQAFSTMGETAFGVKIITHRVTGGSAGYCFVEMADEASVDRCVQRLNGKLVPGSNPPRKFKLNYATYG---KRPEPGPEFSVFVGDLTSEVDDYQLHQ 117          
BLAST of FC929936 vs. ExPASy Swiss-Prot
Match: CSX1_SCHPO (RNA-binding post-transcriptional regulator csx1 OS=Schizosaccharomyces pombe GN=csx1 PE=1 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.233e-16
Identity = 44/110 (40.00%), Postives = 65/110 (59.09%), Query Frame = 2
Query:  317 SLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSE--GYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFRLNWATYGAGERRQ--DDGPDFTIFVGDLAADVTD 634
            +LW+GDL+PWM+ ++I  ++    E V+ KV+R+K ++      Y F++F S AAAER L  +N T +P     F+LNWAT G  +        P+F+IFVGDL     D
Sbjct:   86 TLWMGDLEPWMDATFIQQLWASLNEPVNVKVMRSKASSSETLISYCFVQFSSSAAAERALMKYNNTMIPGAHCTFKLNWATGGGIQHNNFVSRDPEFSIFVGDLLPTTED 195          
BLAST of FC929936 vs. ExPASy Swiss-Prot
Match: YG41_SCHPO (Uncharacterized RNA-binding protein C23E6.01c OS=Schizosaccharomyces pombe GN=SPBC23E6.01c PE=1 SV=2)

HSP 1 Score: 84.3445 bits (207), Expect = 6.121e-16
Identity = 42/121 (34.71%), Postives = 71/121 (58.68%), Query Frame = 2
Query:  278 YGVAPDASSDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFRLNWATYGA-GERRQDDGPDFTIFVGDLAADVTDY 637
            YG + D +     +LW+G+L+PW+ E++I  ++   G+ V  K+IRN+ T  + GY F+EF S   A   + + N   +P T   F+LNWA+ G   E+      +++IFVGDL+ +V ++
Sbjct:   81 YGSSRDENVYQKTTLWMGELEPWVTEAFIQQVWNTLGKAVKVKLIRNRYTGMNAGYCFVEFASPHEASSAM-SMNNKPIPGTNHLFKLNWASGGGLREKSISKASEYSIFVGDLSPNVNEF 200          
BLAST of FC929936 vs. ExPASy Swiss-Prot
Match: TSAP1_DANRE (tRNA selenocysteine 1-associated protein 1 OS=Danio rerio GN=trnau1ap PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 6.767e-15
Identity = 44/116 (37.93%), Postives = 68/116 (58.62%), Query Frame = 2
Query:  311 IRSLWIGDLQPWMEESYIASIFGHTGE-FVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMP--STEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQE 649
            + SLW+G+L+P+M+E +I   F   GE  V  ++IR+K T  + GYGF+E     A ER L+  NG  +P  +  + F+L+ + YG    +Q +   F++FV DL  DV D +L E
Sbjct:    1 MNSLWMGNLEPYMDEDFICRAFAQMGETVVKIRLIRDKITGKNAGYGFVELADDTAVERCLRKVNGKPLPGATPPKRFKLSRSNYG----KQGESSTFSLFVSDLTPDVDDGMLYE 112          
The following BLAST results are available for this feature:
BLAST of FC929936 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 9
Match NameE-valueIdentityDescription
TSAP1_RAT2.401e-2044.74tRNA selenocysteine 1-associated protein 1 OS=Ratt... [more]
TSAP1_MOUSE2.401e-2044.74tRNA selenocysteine 1-associated protein 1 OS=Mus ... [more]
TSAP1_HUMAN2.401e-2044.74tRNA selenocysteine 1-associated protein 1 OS=Homo... [more]
TSAP1_BOVIN2.401e-2044.74tRNA selenocysteine 1-associated protein 1 OS=Bos ... [more]
TSAP1_PONAB6.987e-2043.86tRNA selenocysteine 1-associated protein 1 OS=Pong... [more]
TSP1L_DANRE1.192e-1942.11tRNA selenocysteine 1-associated protein 1-like OS... [more]
CSX1_SCHPO1.233e-1640.00RNA-binding post-transcriptional regulator csx1 OS... [more]
YG41_SCHPO6.121e-1634.71Uncharacterized RNA-binding protein C23E6.01c OS=S... [more]
TSAP1_DANRE6.767e-1537.93tRNA selenocysteine 1-associated protein 1 OS=Dani... [more]
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Properties
Property NameValue
Genbank descriptionC34002A07EF PostHarvC1 Citrus clementina cDNA clone C34002A07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929936 ID=FC929936; Name=FC929936; organism=Citrus clementina; type=EST; length=671bp
GAGTTCTCGCATTACCCTCTCTTCTAGGGCTCAGTTTACCCTCTTCATCG
GATCTCGAAAATCAATTAATAACGCTTTAGTAATTGATATAACGATGATG
CAACAACCGCCATCACAGCCTTCCGATCAGACTAGCCAGTACCAGCAGCA
ACATCAGCAGTGGATGGCGTATCAACAGCAGTCGCAGCAGCAGCAACAAC
AACATCAAACTCCGGTGCCACCTCCGGTTGGATGGACTCCGCAGCCGGTG
CCTCCTCCATCTCAGCAGACGCAGCCCTACGGTGTCGCCCCCGATGCTTC
CTCCGACGGGATCCGTTCTTTGTGGATCGGAGACTTGCAGCCGTGGATGG
AGGAGAGTTATATCGCCAGCATCTTCGGCCATACTGGAGAGTTTGTTTCA
GGAAAGGTTATTCGCAACAAGCAAACAAATTTTTCAGAGGGTTATGGTTT
TATTGAGTTTGTTAGTCATGCTGCTGCAGAGAGGGTTTTGCAGACTTTTA
ATGGCACCCAAATGCCAAGCACTGAGCAAAACTTCAGACTGAATTGGGCA
ACCTATGGGGCTGGTGAGAGGCGTCAAGATGATGGTCCTGATTTTACAAT
TTTTGTGGGAGATTTGGCTGCCGATGTAACTGACTATGTGCTACAAGAAC
ATTTAGAGCTGTCTACTCGTC
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