FC929936
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC929936 vs. ExPASy Swiss-Prot
Match: TSAP1_RAT (tRNA selenocysteine 1-associated protein 1 OS=Rattus norvegicus GN=Trnau1ap PE=1 SV=1) HSP 1 Score: 98.9821 bits (245), Expect = 2.401e-20 Identity = 51/114 (44.74%), Postives = 75/114 (65.79%), Query Frame = 2 Query: 317 SLWIGDLQPWMEESYIASIFGHTGEFV-SGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMP--STEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQE 649 SLW+GDL+P+M+E++I+ F GE V S K+IRN+ T GY F+EF A AE+ L NG +P + + F+LN+ATYG ++ D+ P++++FVGDL DV D +L E Sbjct: 4 SLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKRFKLNYATYG---KQPDNSPEYSLFVGDLTPDVDDGMLYE 114
BLAST of FC929936 vs. ExPASy Swiss-Prot
Match: TSAP1_MOUSE (tRNA selenocysteine 1-associated protein 1 OS=Mus musculus GN=Trnau1ap PE=1 SV=2) HSP 1 Score: 98.9821 bits (245), Expect = 2.401e-20 Identity = 51/114 (44.74%), Postives = 75/114 (65.79%), Query Frame = 2 Query: 317 SLWIGDLQPWMEESYIASIFGHTGEFV-SGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMP--STEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQE 649 SLW+GDL+P+M+E++I+ F GE V S K+IRN+ T GY F+EF A AE+ L NG +P + + F+LN+ATYG ++ D+ P++++FVGDL DV D +L E Sbjct: 4 SLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKRFKLNYATYG---KQPDNSPEYSLFVGDLTPDVDDGMLYE 114
BLAST of FC929936 vs. ExPASy Swiss-Prot
Match: TSAP1_HUMAN (tRNA selenocysteine 1-associated protein 1 OS=Homo sapiens GN=TRNAU1AP PE=1 SV=1) HSP 1 Score: 98.9821 bits (245), Expect = 2.401e-20 Identity = 51/114 (44.74%), Postives = 75/114 (65.79%), Query Frame = 2 Query: 317 SLWIGDLQPWMEESYIASIFGHTGEFV-SGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMP--STEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQE 649 SLW+GDL+P+M+E++I+ F GE V S K+IRN+ T GY F+EF A AE+ L NG +P + + F+LN+ATYG ++ D+ P++++FVGDL DV D +L E Sbjct: 4 SLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKRFKLNYATYG---KQPDNSPEYSLFVGDLTPDVDDGMLYE 114
BLAST of FC929936 vs. ExPASy Swiss-Prot
Match: TSAP1_BOVIN (tRNA selenocysteine 1-associated protein 1 OS=Bos taurus GN=TRNAU1AP PE=2 SV=1) HSP 1 Score: 98.9821 bits (245), Expect = 2.401e-20 Identity = 51/114 (44.74%), Postives = 75/114 (65.79%), Query Frame = 2 Query: 317 SLWIGDLQPWMEESYIASIFGHTGEFV-SGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMP--STEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQE 649 SLW+GDL+P+M+E++I+ F GE V S K+IRN+ T GY F+EF A AE+ L NG +P + + F+LN+ATYG ++ D+ P++++FVGDL DV D +L E Sbjct: 4 SLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKRFKLNYATYG---KQPDNSPEYSLFVGDLTPDVDDGMLYE 114
BLAST of FC929936 vs. ExPASy Swiss-Prot
Match: TSAP1_PONAB (tRNA selenocysteine 1-associated protein 1 OS=Pongo abelii GN=TRNAU1AP PE=2 SV=1) HSP 1 Score: 97.4413 bits (241), Expect = 6.987e-20 Identity = 50/114 (43.86%), Postives = 74/114 (64.91%), Query Frame = 2 Query: 317 SLWIGDLQPWMEESYIASIFGHTGEFV-SGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMP--STEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQE 649 SLW+GDL+P+M+E++I+ F GE V S K+IRN+ T GY F+EF A AE+ L NG +P + + F+LN+ TYG ++ D+ P++++FVGDL DV D +L E Sbjct: 4 SLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKRFKLNYVTYG---KQPDNSPEYSLFVGDLTPDVDDGMLYE 114
BLAST of FC929936 vs. ExPASy Swiss-Prot
Match: TSP1L_DANRE (tRNA selenocysteine 1-associated protein 1-like OS=Danio rerio GN=trnau1apl PE=2 SV=1) HSP 1 Score: 96.6709 bits (239), Expect = 1.192e-19 Identity = 48/114 (42.11%), Postives = 73/114 (64.04%), Query Frame = 2 Query: 317 SLWIGDLQPWMEESYIASIFGHTGEFVSG-KVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTE--QNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQE 649 SLW+GDL P+M+E++I F GE G K+I ++ T S GY F+E A+ +R +Q NG +P + + F+LN+ATYG +R + GP+F++FVGDL ++V DY L + Sbjct: 7 SLWMGDLDPYMDENFIKQAFSTMGETAFGVKIITHRVTGGSAGYCFVEMADEASVDRCVQRLNGKLVPGSNPPRKFKLNYATYG---KRPEPGPEFSVFVGDLTSEVDDYQLHQ 117
BLAST of FC929936 vs. ExPASy Swiss-Prot
Match: CSX1_SCHPO (RNA-binding post-transcriptional regulator csx1 OS=Schizosaccharomyces pombe GN=csx1 PE=1 SV=1) HSP 1 Score: 86.6557 bits (213), Expect = 1.233e-16 Identity = 44/110 (40.00%), Postives = 65/110 (59.09%), Query Frame = 2 Query: 317 SLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSE--GYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFRLNWATYGAGERRQ--DDGPDFTIFVGDLAADVTD 634 +LW+GDL+PWM+ ++I ++ E V+ KV+R+K ++ Y F++F S AAAER L +N T +P F+LNWAT G + P+F+IFVGDL D Sbjct: 86 TLWMGDLEPWMDATFIQQLWASLNEPVNVKVMRSKASSSETLISYCFVQFSSSAAAERALMKYNNTMIPGAHCTFKLNWATGGGIQHNNFVSRDPEFSIFVGDLLPTTED 195
BLAST of FC929936 vs. ExPASy Swiss-Prot
Match: YG41_SCHPO (Uncharacterized RNA-binding protein C23E6.01c OS=Schizosaccharomyces pombe GN=SPBC23E6.01c PE=1 SV=2) HSP 1 Score: 84.3445 bits (207), Expect = 6.121e-16 Identity = 42/121 (34.71%), Postives = 71/121 (58.68%), Query Frame = 2 Query: 278 YGVAPDASSDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFRLNWATYGA-GERRQDDGPDFTIFVGDLAADVTDY 637 YG + D + +LW+G+L+PW+ E++I ++ G+ V K+IRN+ T + GY F+EF S A + + N +P T F+LNWA+ G E+ +++IFVGDL+ +V ++ Sbjct: 81 YGSSRDENVYQKTTLWMGELEPWVTEAFIQQVWNTLGKAVKVKLIRNRYTGMNAGYCFVEFASPHEASSAM-SMNNKPIPGTNHLFKLNWASGGGLREKSISKASEYSIFVGDLSPNVNEF 200
BLAST of FC929936 vs. ExPASy Swiss-Prot
Match: TSAP1_DANRE (tRNA selenocysteine 1-associated protein 1 OS=Danio rerio GN=trnau1ap PE=2 SV=1) HSP 1 Score: 80.8777 bits (198), Expect = 6.767e-15 Identity = 44/116 (37.93%), Postives = 68/116 (58.62%), Query Frame = 2 Query: 311 IRSLWIGDLQPWMEESYIASIFGHTGE-FVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMP--STEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQE 649 + SLW+G+L+P+M+E +I F GE V ++IR+K T + GYGF+E A ER L+ NG +P + + F+L+ + YG +Q + F++FV DL DV D +L E Sbjct: 1 MNSLWMGNLEPYMDEDFICRAFAQMGETVVKIRLIRDKITGKNAGYGFVELADDTAVERCLRKVNGKPLPGATPPKRFKLSRSNYG----KQGESSTFSLFVSDLTPDVDDGMLYE 112 The following BLAST results are available for this feature:
BLAST of FC929936 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 9
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >FC929936 ID=FC929936; Name=FC929936; organism=Citrus clementina; type=EST; length=671bpback to top |