FC929954

Overview
NameFC929954
Unique NameFC929954
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length717
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15070 contig Ccv1_Contig15070:1..717. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of FC929954 vs. ExPASy Swiss-Prot
Match: TIM50_ARATH (Mitochondrial import inner membrane translocase subunit TIM50 OS=Arabidopsis thaliana GN=TIM50 PE=1 SV=1)

HSP 1 Score: 179.874 bits (455), Expect = 1.211e-44
Identity = 99/221 (44.80%), Postives = 134/221 (60.63%), Query Frame = 1 
Query:   73 SSNVVRPRIFQILSKISNRNCSKYRRGFSSDTVSGAPKKEPIIPSQSIVGDISXXXXXXXXXXXXXXXXX------RKSSWRFLTYGIVATLTGVTAGAGYLTYAYSTDEIEEKTRSLRESVNYTAGEDASASE---KYQGLLYSAAMTVPAKAVEIYLDLRRLIEEQVRGFTEPTSDKLLPDLHPAEQHVFTLVLDLNETLLYSDWKRDRGWRTFNDPGV 708
            +S V+R R+   L+K+ +RN   +    SS   +   +   +  +QS+  D                          +   ++L Y ++  LTG TA  GY ++AY+ DE+ EKT++ RES   T    +S  +   KYQ  LYSAAMT  A+A++ YL+LR ++EEQV+GFTEP S+KLLPDLHPAEQHVFTLVLDLNETLLY+DWKR+RGWRTF  PGV
Sbjct:    2 ASIVLRSRLLPRLAKLRSRNLRCFSAEASS--TNSTSRYSGVTSTQSMFSDFPPPNQPPPPPPPQVEAAAAAATGKERKGLKYLGYALLWALTGATAATGYASFAYTIDEVNEKTKAFRESATKTPVIKSSGIDVIDKYQTKLYSAAMTGSARAIDKYLELREIVEEQVKGFTEPLSEKLLPDLHPAEQHVFTLVLDLNETLLYTDWKRERGWRTFKRPGV 220
The following BLAST results are available for this feature:
BLAST of FC929954 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
TIM50_ARATH1.211e-4444.80Mitochondrial import inner membrane translocase su... [more]
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Properties
Property NameValue
Genbank descriptionC34002C02EF PostHarvC1 Citrus clementina cDNA clone C34002C02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929954 ID=FC929954; Name=FC929954; organism=Citrus clementina; type=EST; length=717bp
CCCCCAACACCTCTAAACCCCATAAAAAAAAAAAGCCAAATATTTTTTCC
TTCCCGAATGTAAAAGAAAACGTCTTCAAATGTTGTCCGGCCTCGAATAT
TTCAAATTTTATCGAAAATAAGTAATCGTAATTGCAGTAAATACAGAAGA
GGTTTTAGCTCCGACACCGTTTCTGGTGCTCCGAAGAAGGAGCCGATCAT
TCCTTCTCAATCGATCGTCGGCGACATCTCGGCGCCGCCGGAGGTTGAGG
CAGCGGAGGAGGCGGCCGCGCCAAATGAAGTGCGGAAGTCGTCGTGGAGG
TTTCTCACGTATGGAATTGTTGCCACCCTGACCGGCGTTACTGCTGGCGC
TGGTTATCTTACTTATGCATACAGCACTGATGAGATAGAGGAGAAGACAA
GGTCACTAAGAGAATCAGTGAATTATACTGCTGGGGAGGACGCATCTGCT
TCTGAGAAATATCAGGGTTTGCTTTACTCAGCTGCAATGACAGTTCCTGC
CAAAGCAGTTGAAATTTACTTGGATCTAAGGAGGCTTATTGAAGAACAAG
TTAGAGGGTTTACTGAACCAACCTCTGATAAGCTTCTTCCAGATTTGCAT
CCTGCAGAGCAACATGTTTTCACACTTGTTCTAGATCTGAACGAAACATT
GCTTTACTCTGATTGGAAGCGTGATAGAGGCTGGCGTACATTCAACGACC
CTGGAGTGATGCTTTCT
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