FC930005

Overview
NameFC930005
Unique NameFC930005
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length673
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10831 contig Ccv1_Contig10831:254..926. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC930005 vs. ExPASy Swiss-Prot
Match: STHY_ARATH (Probable salt tolerance-like protein At1g78600 OS=Arabidopsis thaliana GN=At1g78600 PE=1 SV=2)

HSP 1 Score: 198.364 bits (503), Expect = 2.935e-50
Identity = 111/236 (47.03%), Postives = 141/236 (59.75%), Query Frame = 1
Query:    1 EAAEAKVPCCADEAALCWECDDKVHAANKLASKHQRVPLSSSSTQMPKCDICQETSGFFFCLQDRALLCRKCDVAIHTANSYVSAHQRFLLTGVKVGLEPADPGAXXXXXXXXXGENILDMKSHSLSRRDAL---------MPVAAECKEVLPASSGGVGDFAMNKVSF-AGGSAAGSTPSWHMDDFLALPELNQNYSFMD-NXXXXXXXXXXXXXXXXXILRSAEE-RLDDDECL 672
            EAAEA V CCADEAALCW CD+K+HAANKLA KHQRVPLS+S++ +PKCDICQE SGFFFCLQDRALLCRKCDVAIHT N +VSAHQRFLLTG+KVGLE  D G           +  ++ K    S  +                + + V+P +   V D    K+   + GS  GS P W +++   L + +Q+Y +M+ N                 ++RSAEE   D++ CL
Sbjct:    9 EAAEATVLCCADEAALCWACDEKIHAANKLAGKHQRVPLSASASSIPKCDICQEASGFFFCLQDRALLCRKCDVAIHTVNPHVSAHQRFLLTGIKVGLESIDTG-PSTKSSPTNDDKTMETKPFVQSIPEPQKMAFDHHHHQQQQEQQEGVIPGTK--VNDQTSTKLPLVSSGSTTGSIPQWQIEEIFGLTDFDQSYEYMENNGSSKADTSRRGDSDSSSMMRSAEEDGEDNNNCL 241          
BLAST of FC930005 vs. ExPASy Swiss-Prot
Match: STO_ARATH (Salt tolerance protein OS=Arabidopsis thaliana GN=STO PE=1 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 7.262e-33
Identity = 65/98 (66.33%), Postives = 78/98 (79.59%), Query Frame = 1
Query:    1 EAAEAKVPCCADEAALCWECDDKVHAANKLASKHQRVPLSSSSTQMPKCDICQETSGFFFCLQDRALLCRKCDVAIHTANSYVSAHQRFLLTGVKVGL 294
            E A A V CCADEAALC +CD ++HAANKLASKHQR+ L+S ST+ P+CDICQE + F FC++DRALLCR CD +IH ANS  + HQRFL TG+KV L
Sbjct:    9 EKAPATVICCADEAALCPQCDIEIHAANKLASKHQRLHLNSLSTKFPRCDICQEKAAFIFCVEDRALLCRDCDESIHVANSRSANHQRFLATGIKVAL 106          
BLAST of FC930005 vs. ExPASy Swiss-Prot
Match: STH_ARATH (Salt tolerance-like protein OS=Arabidopsis thaliana GN=STH PE=1 SV=2)

HSP 1 Score: 129.798 bits (325), Expect = 1.282e-29
Identity = 61/98 (62.24%), Postives = 73/98 (74.49%), Query Frame = 1
Query:    1 EAAEAKVPCCADEAALCWECDDKVHAANKLASKHQRVPLSSSSTQMPKCDICQETSGFFFCLQDRALLCRKCDVAIHTANSYVSAHQRFLLTGVKVGL 294
            E A A + CCADEAALC +CD +VHAANKLASKHQR+ L S ST+ P CDIC E + F FC++DRALLCR CD A H  N+  + HQRFL TG++V L
Sbjct:    9 EKAPATLICCADEAALCAKCDVEVHAANKLASKHQRLFLDSLSTKFPPCDICLEKAAFIFCVEDRALLCRDCDEATHAPNTRSANHQRFLATGIRVAL 106          
BLAST of FC930005 vs. ExPASy Swiss-Prot
Match: STHX_ARATH (Probable salt tolerance-like protein At1g75540 OS=Arabidopsis thaliana GN=At1g75540 PE=1 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 2.417e-28
Identity = 74/184 (40.22%), Postives = 97/184 (52.72%), Query Frame = 1
Query:   10 EAKVPCCADEAALCWECDDKVHAANKLASKHQRVPL---SSSSTQMPKCDICQETSGFFFCLQDRALLCRKCDVAIHTANSYVSAHQRFLLTGVKVGLEPADPGAXXXXXXXXXGENILDMKSHSLSRRDAL-MPVAA--ECKEVLPASSGGVGDFAMNK---VSFAGGSAAGSTPSWHMDDFL 534
            EA V C ADEA+LC  CD +VH ANKLASKH R  L   SSS+T  P CDICQ+     FC QDRA+LC+ CD +IH AN +   H RFLLTGVK+    +                   +   S+S    L  P++A  +  ++ P S    GD ++N+    S        + P WH++DFL
Sbjct:   12 EASVFCTADEASLCGGCDHQVHHANKLASKHLRFSLLYPSSSNTSSPLCDICQDKKALLFCQQDRAILCKDCDSSIHAANEHTKKHDRFLLTGVKLSATSSVYKPTSKSSSSSSSNQDFSVPGSSISNPPPLKKPLSAPPQSNKIQPFSKINGGDASVNQWGSTSTISEYLMDTLPGWHVEDFL 195          
BLAST of FC930005 vs. ExPASy Swiss-Prot
Match: COL1_ARATH (Zinc finger protein CONSTANS-LIKE 1 OS=Arabidopsis thaliana GN=COL1 PE=1 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.682e-13
Identity = 39/87 (44.83%), Postives = 47/87 (54.02%), Query Frame = 1
Query:    4 AAEAKVPCCADEAALCWECDDKVHAANKLASKHQRVPLSSSSTQMPKCDICQETSGFFFCLQDRALLCRKCDVAIHTANSYVSAHQR 264
            +A   V C AD A LC  CD +VHAAN+LAS+H+RV +         C  C+     FFC  D A LC  CD  IH+AN     HQR
Sbjct:   17 SAACTVYCRADSAYLCSSCDAQVHAANRLASRHERVRV---------CQSCERAPAAFFCKADAASLCTTCDSEIHSANPLARRHQR 94          
BLAST of FC930005 vs. ExPASy Swiss-Prot
Match: COL3_ARATH (Zinc finger protein CONSTANS-LIKE 3 OS=Arabidopsis thaliana GN=COL3 PE=1 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 6.391e-13
Identity = 39/101 (38.61%), Postives = 54/101 (53.47%), Query Frame = 1
Query:    1 EAAEAKVPCCADEAALCWECDDKVHAANKLASKHQRVPLSSSSTQMPKCDICQETSGFFFCLQDRALLCRKCDVAIHTANSYVSAHQRFLLTGVKVGLEPA 303
            ++  A + C AD A LC +CD K+H ANKLAS+H+RV L         C++C++      C  D A LC  CD  IH+AN     H+R  +T     + PA
Sbjct:   12 KSTAATLFCRADAAFLCGDCDGKIHTANKLASRHERVWL---------CEVCEQAPAHVTCKADAAALCVTCDRDIHSANPLSRRHERVPITPFYDAVGPA 103          
BLAST of FC930005 vs. ExPASy Swiss-Prot
Match: COL4_ARATH (Zinc finger protein CONSTANS-LIKE 4 OS=Arabidopsis thaliana GN=COL4 PE=2 SV=2)

HSP 1 Score: 73.559 bits (179), Expect = 1.090e-12
Identity = 38/92 (41.30%), Postives = 50/92 (54.35%), Query Frame = 1
Query:    1 EAAEAKVPCCADEAALCWECDDKVHAANKLASKHQRVPLSSSSTQMPKCDICQETSGFFFCLQDRALLCRKCDVAIHTANSYVSAHQRFLLT 276
            ++A A + C  D A LC  CD KVHAANKLAS+H RV +         C++C++      C  D A LC  CD  IH+AN     H+R  +T
Sbjct:   10 KSATAALYCRPDAAFLCLSCDSKVHAANKLASRHARVWM---------CEVCEQAPAHVTCKADAAALCVTCDRDIHSANPLARRHERVPVT 92          
BLAST of FC930005 vs. ExPASy Swiss-Prot
Match: COL2_ARATH (Zinc finger protein CONSTANS-LIKE 2 OS=Arabidopsis thaliana GN=COL2 PE=1 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.090e-12
Identity = 37/87 (42.53%), Postives = 46/87 (52.87%), Query Frame = 1
Query:    4 AAEAKVPCCADEAALCWECDDKVHAANKLASKHQRVPLSSSSTQMPKCDICQETSGFFFCLQDRALLCRKCDVAIHTANSYVSAHQR 264
            +A   V C AD A LC  CD +VHAAN++AS+H+RV +         C  C+     F C  D A LC  CD  IH+AN     HQR
Sbjct:   21 SAACTVYCEADSAYLCTTCDARVHAANRVASRHERVRV---------CQSCESAPAAFLCKADAASLCTACDAEIHSANPLARRHQR 98          
BLAST of FC930005 vs. ExPASy Swiss-Prot
Match: CONS_ARATH (Zinc finger protein CONSTANS OS=Arabidopsis thaliana GN=CO PE=1 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 9.229e-12
Identity = 34/82 (41.46%), Postives = 45/82 (54.88%), Query Frame = 1
Query:   19 VPCCADEAALCWECDDKVHAANKLASKHQRVPLSSSSTQMPKCDICQETSGFFFCLQDRALLCRKCDVAIHTANSYVSAHQR 264
            V C AD A LC  CD +VH+AN++AS+H+RV +         C+ C+     F C  D A LC  CD  +H+AN     HQR
Sbjct:   30 VYCHADSAYLCMSCDAQVHSANRVASRHKRVRV---------CESCERAPAAFLCEADDASLCTACDSEVHSANPLARRHQR 102          
The following BLAST results are available for this feature:
BLAST of FC930005 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 9
Match NameE-valueIdentityDescription
STHY_ARATH2.935e-5047.03Probable salt tolerance-like protein At1g78600 OS=... [more]
STO_ARATH7.262e-3366.33Salt tolerance protein OS=Arabidopsis thaliana GN=... [more]
STH_ARATH1.282e-2962.24Salt tolerance-like protein OS=Arabidopsis thalian... [more]
STHX_ARATH2.417e-2840.22Probable salt tolerance-like protein At1g75540 OS=... [more]
COL1_ARATH1.682e-1344.83Zinc finger protein CONSTANS-LIKE 1 OS=Arabidopsis... [more]
COL3_ARATH6.391e-1338.61Zinc finger protein CONSTANS-LIKE 3 OS=Arabidopsis... [more]
COL4_ARATH1.090e-1241.30Zinc finger protein CONSTANS-LIKE 4 OS=Arabidopsis... [more]
COL2_ARATH1.090e-1242.53Zinc finger protein CONSTANS-LIKE 2 OS=Arabidopsis... [more]
CONS_ARATH9.229e-1241.46Zinc finger protein CONSTANS OS=Arabidopsis thalia... [more]
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Properties
Property NameValue
Genbank descriptionC34002G05EF PostHarvC1 Citrus clementina cDNA clone C34002G05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930005 ID=FC930005; Name=FC930005; organism=Citrus clementina; type=EST; length=673bp
GAGGCGGCGGAGGCGAAGGTGCCGTGCTGCGCCGACGAGGCGGCGCTGTG
CTGGGAGTGCGACGACAAAGTTCACGCCGCCAATAAGCTAGCGAGCAAGC
ACCAGAGAGTCCCTCTCTCCTCTTCTTCGACACAAATGCCCAAGTGTGAT
ATCTGTCAGGAAACATCTGGCTTTTTCTTTTGTCTACAAGATCGAGCCTT
ACTCTGCAGGAAATGTGATGTTGCCATACACACAGCGAATAGCTATGTGT
CTGCTCATCAGAGATTTTTGCTTACTGGAGTAAAAGTAGGTCTTGAACCA
GCTGATCCTGGTGCTTCATCTTCCTCTATTAAGTCACTATCTGGGGAAAA
CATTTTGGACATGAAATCCCATTCCCTGTCTAGAAGGGACGCCCTGATGC
CAGTGGCTGCTGAATGCAAAGAAGTTTTACCTGCTAGTTCTGGTGGAGTT
GGCGACTTTGCAATGAACAAAGTCTCATTTGCTGGGGGGTCTGCAGCTGG
AAGCACTCCGTCGTGGCACATGGATGATTTTCTAGCACTTCCTGAGCTCA
ATCAAAATTATAGCTTCATGGATAATGGGTCATCTAAGGCTGATAGTGGC
AAGCGTGGAGACTCTGACAGCTCATCTATCTTAAGATCTGCTGAGGAAAG
ACTAGATGATGATGAGTGTTTGG
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