FC930010

Overview
NameFC930010
Unique NameFC930010
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length714
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15087 contig Ccv1_Contig15087:1..715. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC930010 vs. ExPASy Swiss-Prot
Match: CIRBP_XENTR (Cold-inducible RNA-binding protein OS=Xenopus tropicalis GN=cirbp PE=2 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.531e-15
Identity = 42/90 (46.67%), Postives = 58/90 (64.44%), Query Frame = 1
Query:  127 DESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDR-STRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEVATRGRKSNSGR 393
            DE  ++VGGL +   E+S+ +VF KYG V  V +V DR S R + +GFVTF NP  A DA+  MNG+++DGR +RV +    G+ SN  R
Sbjct:    4 DEGKLFVGGLNFETTEESLEQVFSKYGQVAEVVVVKDRESKRSRGFGFVTFENPEDAKDAMMAMNGKSVDGRQIRVDQA---GKSSNDRR 90          
BLAST of FC930010 vs. ExPASy Swiss-Prot
Match: CIRBB_XENLA (Cold-inducible RNA-binding protein B OS=Xenopus laevis GN=cirbp-B PE=1 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 4.453e-15
Identity = 40/92 (43.48%), Postives = 58/92 (63.04%), Query Frame = 1
Query:  121 IDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEVATRGRKSNSGR 393
            + DE  +++GGL +  NE+S+ +VF KYG +  V +V DR T R + +GFVTF NP  A DA+  MNG+ +DGR +RV +    G+ S   R
Sbjct:    1 MSDEGKLFIGGLNFDTNEESLEQVFSKYGQISEVVVVKDRETKRSRGFGFVTFENPDDAKDAMMAMNGKAVDGRQIRVDQA---GKSSGDRR 89          
BLAST of FC930010 vs. ExPASy Swiss-Prot
Match: GRP8_ARATH (Glycine-rich RNA-binding protein 8 OS=Arabidopsis thaliana GN=GRP8 PE=1 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 3.770e-14
Identity = 36/88 (40.91%), Postives = 59/88 (67.05%), Query Frame = 1
Query:  130 ESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDR-STRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEVATRGRKSNSG 390
            E   +VGGL ++ N++ +++ F ++G V+  KI+NDR S R + +GFVTF + ++  DAI +MNG+ +DGRV+ V+E  +RG     G
Sbjct:    5 EYRCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEEMNGKELDGRVITVNEAQSRGSGGGGG 92          
BLAST of FC930010 vs. ExPASy Swiss-Prot
Match: CIRBP_RANCA (Cold-inducible RNA-binding protein OS=Rana catesbeiana GN=cirbp PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 4.924e-14
Identity = 40/90 (44.44%), Postives = 55/90 (61.11%), Query Frame = 1
Query:  127 DESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEVATRGRKSNSGR 393
            DE  ++VGGL +  +E  +  VF KYG +  V +V DR T R + +GFVTF N   A DA+  MNG+T+DGR +RV +    G+ SN  R
Sbjct:    4 DEGKLFVGGLSFDTDEQCLETVFSKYGQIQEVVVVKDRETKRSRGFGFVTFENCEDAKDAMAGMNGKTVDGRQIRVDQA---GKSSNDRR 90          
BLAST of FC930010 vs. ExPASy Swiss-Prot
Match: GRP1_DAUCA (Glycine-rich RNA-binding protein OS=Daucus carota PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 6.431e-14
Identity = 37/89 (41.57%), Postives = 57/89 (64.04%), Query Frame = 1
Query:  130 ESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEVATRGRKSNSGR 393
            E   +VGGL ++ N++S+ + F ++G +   KI+NDR T R + +GFVTF + +S  DAI  MNG+ +DGR + V+E  +RG     GR
Sbjct:    5 EYRCFVGGLAWATNDESLEQAFSQFGDITDSKIINDRETGRSRGFGFVTFKDEKSMRDAIEGMNGQELDGRNITVNEAQSRGSGGGGGR 93          
BLAST of FC930010 vs. ExPASy Swiss-Prot
Match: CIRBP_PONAB (Cold-inducible RNA-binding protein OS=Pongo abelii GN=CIRBP PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 6.431e-14
Identity = 38/89 (42.70%), Postives = 54/89 (60.67%), Query Frame = 1
Query:  127 DESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEVATRGRKSNSG 390
            DE  ++VGGL +  NE S+ +VF KYG +  V +V DR T R + +GFVTF N   A DA+  MNG+++DGR +RV +        + G
Sbjct:    4 DEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQAGKSSDNRSRG 92          
BLAST of FC930010 vs. ExPASy Swiss-Prot
Match: CIRBP_HUMAN (Cold-inducible RNA-binding protein OS=Homo sapiens GN=CIRBP PE=1 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 6.431e-14
Identity = 38/89 (42.70%), Postives = 54/89 (60.67%), Query Frame = 1
Query:  127 DESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEVATRGRKSNSG 390
            DE  ++VGGL +  NE S+ +VF KYG +  V +V DR T R + +GFVTF N   A DA+  MNG+++DGR +RV +        + G
Sbjct:    4 DEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQAGKSSDNRSRG 92          
BLAST of FC930010 vs. ExPASy Swiss-Prot
Match: GRP10_BRANA (Glycine-rich RNA-binding protein 10 OS=Brassica napus GN=GRP10 PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 8.399e-14
Identity = 36/89 (40.45%), Postives = 57/89 (64.04%), Query Frame = 1
Query:  130 ESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEVATRGRKSNSGR 393
            E   +VGGL ++  +  + + F ++G V+  KI+NDR T R + +GFVTF + +S  DAI++MNG+ +DGR + V+E  +RG     GR
Sbjct:    5 EYRCFVGGLAWATGDAELERTFSQFGEVIDSKIINDRETGRSRGFGFVTFKDEKSMKDAIDEMNGKELDGRTITVNEAQSRGGGGGGGR 93          
BLAST of FC930010 vs. ExPASy Swiss-Prot
Match: CIRBP_RAT (Cold-inducible RNA-binding protein OS=Rattus norvegicus GN=Cirbp PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.433e-13
Identity = 37/89 (41.57%), Postives = 54/89 (60.67%), Query Frame = 1
Query:  127 DESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEVATRGRKSNSG 390
            DE  ++VGGL +  NE ++ +VF KYG +  V +V DR T R + +GFVTF N   A DA+  MNG+++DGR +RV +        + G
Sbjct:    4 DEGKLFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQAGKSSDNRSRG 92          
BLAST of FC930010 vs. ExPASy Swiss-Prot
Match: CIRBP_MOUSE (Cold-inducible RNA-binding protein OS=Mus musculus GN=Cirbp PE=1 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.433e-13
Identity = 37/89 (41.57%), Postives = 54/89 (60.67%), Query Frame = 1
Query:  127 DESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEVATRGRKSNSG 390
            DE  ++VGGL +  NE ++ +VF KYG +  V +V DR T R + +GFVTF N   A DA+  MNG+++DGR +RV +        + G
Sbjct:    4 DEGKLFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQAGKSSDNRSRG 92          
The following BLAST results are available for this feature:
BLAST of FC930010 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 32
Match NameE-valueIdentityDescription
CIRBP_XENTR1.531e-1546.67Cold-inducible RNA-binding protein OS=Xenopus trop... [more]
CIRBB_XENLA4.453e-1543.48Cold-inducible RNA-binding protein B OS=Xenopus la... [more]
GRP8_ARATH3.770e-1440.91Glycine-rich RNA-binding protein 8 OS=Arabidopsis ... [more]
CIRBP_RANCA4.924e-1444.44Cold-inducible RNA-binding protein OS=Rana catesbe... [more]
GRP1_DAUCA6.431e-1441.57Glycine-rich RNA-binding protein OS=Daucus carota ... [more]
CIRBP_PONAB6.431e-1442.70Cold-inducible RNA-binding protein OS=Pongo abelii... [more]
CIRBP_HUMAN6.431e-1442.70Cold-inducible RNA-binding protein OS=Homo sapiens... [more]
GRP10_BRANA8.399e-1440.45Glycine-rich RNA-binding protein 10 OS=Brassica na... [more]
CIRBP_RAT1.433e-1341.57Cold-inducible RNA-binding protein OS=Rattus norve... [more]
CIRBP_MOUSE1.433e-1341.57Cold-inducible RNA-binding protein OS=Mus musculus... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC34002G10EF PostHarvC1 Citrus clementina cDNA clone C34002G10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930010 ID=FC930010; Name=FC930010; organism=Citrus clementina; type=EST; length=714bp
AGAACTGCAAAAGTGGAGCGTCGTAGAGAAGGAGGCAGACAAGGAGTATC
CACATCCATAGTTGTGCCGATCAAGGCAAGACTAATTTTTAATTTGATTG
AAGAGAGAGTGAAAATGACGATAGATGACGAAAGCTCCGTGTACGTGGGG
GGGCTGCCTTACAGTGCTAACGAGGACAGCGTTCGCAAAGTCTTCGATAA
ATATGGTTCAGTCGTCGCCGTTAAGATCGTTAATGATCGGAGTACTAGGG
GGAAATGCTACGGTTTTGTTACTTTTGGGAATCCTCGATCAGCAGTTGAT
GCCATCAATGACATGAATGGCAGGACTATTGATGGGCGTGTTGTGAGAGT
AAGTGAAGTTGCAACTAGAGGTAGGAAATCAAATTCTGGTCGAGACCAAT
TTCGACATGGTCACCGTCATAAAGGTCGAGATAGGGATAATAATCGTCAC
AGGGACAGATATCAGGATCGATACAATGATAGGTCCAGAGAGCGTACTTC
ATCTCAGGACCGTGATAAAGGTATGGGAAGAGAATATGAGCACGTGCGTG
ATCATGATCGTGATCCATCTAGGGATCGTTTCTCGGATGAAGATCAAGGC
AGAGATTTGGAGAATAATGACCAAGGTCACACTAGGATCCATGATCCGGA
GTTGGCCAACTGGGAAAGGAAGAGTGAGTTGGATATGACTCGAGACAGGG
AGATTGATGGAACC
back to top