FC930017
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC930017 vs. ExPASy Swiss-Prot
Match: SUCA_ORYSJ (Probable succinyl-CoA ligase [GDP-forming] subunit alpha, mitochondrial OS=Oryza sativa subsp. japonica GN=Os07g0577700 PE=1 SV=1) HSP 1 Score: 323.553 bits (828), Expect = 2.160e-95 Identity = 164/197 (83.25%), Postives = 174/197 (88.32%), Query Frame = 1 Query: 46 LSTSAGPAAHSRYYGSSAAAS-QPAVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPPFXXXXXXXXXXX-LDLVVCITEGIPQHDMVRVKAALNRQSKTRLIGPNCPGIIKPGECKIGIMPGYIHKPGRVGIVSRSGTLTYEAVFQTTVVGLGQS 630 L ++A H+R + ++AAA+ PAVFVDK+TRVICQGITGKNGTFHTEQAIEYGT MVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPPF LDLVVCITEGIPQHDMV+VKAALN+QSKTRLIGPNCPGIIKPGECKIGIMPGYIHKPGRVGIVSRSGTLTYEAVFQTT VGLGQS Sbjct: 12 LGSAASRLLHARGFAAAAAAAPSPAVFVDKSTRVICQGITGKNGTFHTEQAIEYGTTMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPPFAAAAIMEAMEAELDLVVCITEGIPQHDMVKVKAALNKQSKTRLIGPNCPGIIKPGECKIGIMPGYIHKPGRVGIVSRSGTLTYEAVFQTTAVGLGQS 208 HSP 2 Score: 47.3654 bits (111), Expect = 2.160e-95 Identity = 19/19 (100.00%), Postives = 19/19 (100.00%), Query Frame = 3 Query: 630 TCVGIGGDPFNGTNFVDCL 686 TCVGIGGDPFNGTNFVDCL Sbjct: 209 TCVGIGGDPFNGTNFVDCL 227
BLAST of FC930017 vs. ExPASy Swiss-Prot
Match: SUCA2_ARATH (Succinyl-CoA ligase [GDP-forming] subunit alpha-2, mitochondrial OS=Arabidopsis thaliana GN=At5g23250 PE=1 SV=2) HSP 1 Score: 308.145 bits (788), Expect = 8.969e-91 Identity = 156/186 (83.87%), Postives = 163/186 (87.63%), Query Frame = 1 Query: 76 SRYYGSSAAASQPAVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPPFXXXXXXXXXXX-LDLVVCITEGIPQHDMVRVKAALNRQSKTRLIGPNCPGIIKPGECKIGIMPGYIHKPGRVGIVSRSGTLTYEAVFQTTVVGLGQS 630 SR +G++ AVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMV GVTPKKGGTEHLGLPVFN+VAEAKAETKANASVIYVP PF LDL+VCITEGIPQHDMVRVKAALN QSKTRLIGPNCPGIIKPGECKIGIMPGYIHKPG++GIVSRSGTLTYEAVFQTT VGLGQS Sbjct: 34 SRSFGTTPPPPA-AVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVAGVTPKKGGTEHLGLPVFNTVAEAKAETKANASVIYVPAPFAAAAIMEGLAAELDLIVCITEGIPQHDMVRVKAALNSQSKTRLIGPNCPGIIKPGECKIGIMPGYIHKPGKIGIVSRSGTLTYEAVFQTTAVGLGQS 218 HSP 2 Score: 47.3654 bits (111), Expect = 8.969e-91 Identity = 19/19 (100.00%), Postives = 19/19 (100.00%), Query Frame = 3 Query: 630 TCVGIGGDPFNGTNFVDCL 686 TCVGIGGDPFNGTNFVDCL Sbjct: 219 TCVGIGGDPFNGTNFVDCL 237
BLAST of FC930017 vs. ExPASy Swiss-Prot
Match: SUCA1_ARATH (Succinyl-CoA ligase [GDP-forming] subunit alpha-1, mitochondrial OS=Arabidopsis thaliana GN=At5g08300 PE=1 SV=1) HSP 1 Score: 305.449 bits (781), Expect = 5.765e-90 Identity = 155/185 (83.78%), Postives = 161/185 (87.03%), Query Frame = 1 Query: 91 SSAAASQP----AVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPPFXXXXXXXXXXX-LDLVVCITEGIPQHDMVRVKAALNRQSKTRLIGPNCPGIIKPGECKIGIMPGYIHKPGRVGIVSRSGTLTYEAVFQTTVVGLGQS 630 S + AS P AVFVDKNTRV+CQGITGKNGTFHTEQAIEYGTKMV GVTPKKGGTEHLGLPVFNSVAEAKA+TKANASVIYVP PF LDL+VCITEGIPQHDMVRVK ALN QSKTRLIGPNCPGIIKPGECKIGIMPGYIHKPG++GIVSRSGTLTYEAVFQTT VGLGQS Sbjct: 39 SRSFASDPHPPAAVFVDKNTRVLCQGITGKNGTFHTEQAIEYGTKMVAGVTPKKGGTEHLGLPVFNSVAEAKADTKANASVIYVPAPFAAAAIMEGIEAELDLIVCITEGIPQHDMVRVKHALNSQSKTRLIGPNCPGIIKPGECKIGIMPGYIHKPGKIGIVSRSGTLTYEAVFQTTAVGLGQS 223 HSP 2 Score: 47.3654 bits (111), Expect = 5.765e-90 Identity = 19/19 (100.00%), Postives = 19/19 (100.00%), Query Frame = 3 Query: 630 TCVGIGGDPFNGTNFVDCL 686 TCVGIGGDPFNGTNFVDCL Sbjct: 224 TCVGIGGDPFNGTNFVDCL 242
BLAST of FC930017 vs. ExPASy Swiss-Prot
Match: SUCA_DICDI (Succinyl-CoA ligase [GDP-forming] subunit alpha, mitochondrial OS=Dictyostelium discoideum GN=scsA PE=1 SV=3) HSP 1 Score: 261.922 bits (668), Expect = 1.079e-76 Identity = 131/193 (67.88%), Postives = 154/193 (79.79%), Query Frame = 1 Query: 55 SAGPAAHSRYYGSSAAASQPAVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPPFXXXXXXXXXXX-LDLVVCITEGIPQHDMVRVKAALNRQSKTRLIGPNCPGIIKPGECKIGIMPGYIHKPGRVGIVSRSGTLTYEAVFQTTVVGLGQS 630 SAG A R +G +++P+V ++K+T+VICQG TG GTFH++QAIEYGT MVGGV+P KGG +HL LPVFN+V EAK T ANA+VIYVPPP ++LVVCITEGIPQ DMV+VK LN+Q+KTRLIGPNCPGIIKPGECKIGIMPG+IHKPG++GIVSRSGTLTYEAV QTT VGLGQS Sbjct: 3 SAGMIA--RNFGKRFFSTKPSVLINKHTKVICQGFTGNQGTFHSKQAIEYGTNMVGGVSPGKGGQKHLDLPVFNTVKEAKEATGANATVIYVPPPHAAAAIKEAIDAEMELVVCITEGIPQQDMVKVKYLLNKQNKTRLIGPNCPGIIKPGECKIGIMPGHIHKPGKIGIVSRSGTLTYEAVAQTTAVGLGQS 193 HSP 2 Score: 46.595 bits (109), Expect = 1.079e-76 Identity = 17/19 (89.47%), Postives = 19/19 (100.00%), Query Frame = 3 Query: 630 TCVGIGGDPFNGTNFVDCL 686 TC+GIGGDPFNGTNF+DCL Sbjct: 194 TCIGIGGDPFNGTNFIDCL 212
BLAST of FC930017 vs. ExPASy Swiss-Prot
Match: SUCA_RAT (Succinyl-CoA ligase [GDP-forming] subunit alpha, mitochondrial OS=Rattus norvegicus GN=Suclg1 PE=2 SV=2) HSP 1 Score: 263.462 bits (672), Expect = 1.406e-76 Identity = 130/180 (72.22%), Postives = 145/180 (80.56%), Query Frame = 1 Query: 94 SAAASQPAVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPPFXXXXXXXXXXX-LDLVVCITEGIPQHDMVRVKAALNRQSKTRLIGPNCPGIIKPGECKIGIMPGYIHKPGRVGIVSRSGTLTYEAVFQTTVVGLGQS 630 S AS+ +++DKNT+VICQG TGK GTFH++QA+EYGTK+VGG TP KGG +HLGLPVFN+V EAK +T A ASVIYVPPPF + LVVCITEGIPQ DMVRVK L RQ KTRLIGPNCPGII PGECKIGIMPG+IHK GR+GIVSRSGTLTYEAV QTT VGLGQS Sbjct: 42 SYTASRKNIYIDKNTKVICQGFTGKQGTFHSQQALEYGTKLVGGTTPGKGGKKHLGLPVFNTVKEAKEKTGATASVIYVPPPFAAAAINEAIDAEIPLVVCITEGIPQQDMVRVKHKLTRQGKTRLIGPNCPGIINPGECKIGIMPGHIHKKGRIGIVSRSGTLTYEAVHQTTQVGLGQS 221 HSP 2 Score: 44.669 bits (104), Expect = 1.406e-76 Identity = 16/18 (88.89%), Postives = 18/18 (100.00%), Query Frame = 3 Query: 633 CVGIGGDPFNGTNFVDCL 686 C+GIGGDPFNGTNF+DCL Sbjct: 223 CIGIGGDPFNGTNFIDCL 240
BLAST of FC930017 vs. ExPASy Swiss-Prot
Match: SUCA_HUMAN (Succinyl-CoA ligase [GDP-forming] subunit alpha, mitochondrial OS=Homo sapiens GN=SUCLG1 PE=1 SV=4) HSP 1 Score: 260.766 bits (665), Expect = 2.612e-75 Identity = 129/180 (71.67%), Postives = 144/180 (80.00%), Query Frame = 1 Query: 94 SAAASQPAVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPPFXXXXXXXXXXX-LDLVVCITEGIPQHDMVRVKAALNRQSKTRLIGPNCPGIIKPGECKIGIMPGYIHKPGRVGIVSRSGTLTYEAVFQTTVVGLGQS 630 S AS+ ++VDKNT++ICQG TGK GTFH++QA+EYGTK+VGG TP KGG HLGLPVFN+V EAK +T A ASVIYVPPPF + LVVCITEGIPQ DMVRVK L RQ KTRLIGPNCPG+I PGECKIGIMPG+IHK GR+GIVSRSGTLTYEAV QTT VGLGQS Sbjct: 42 SYTASRQHLYVDKNTKIICQGFTGKQGTFHSQQALEYGTKLVGGTTPGKGGQTHLGLPVFNTVKEAKEQTGATASVIYVPPPFAAAAINEAIEAEIPLVVCITEGIPQQDMVRVKHKLLRQEKTRLIGPNCPGVINPGECKIGIMPGHIHKKGRIGIVSRSGTLTYEAVHQTTQVGLGQS 221 HSP 2 Score: 43.1282 bits (100), Expect = 2.612e-75 Identity = 16/18 (88.89%), Postives = 18/18 (100.00%), Query Frame = 3 Query: 633 CVGIGGDPFNGTNFVDCL 686 CVGIGGDPFNGT+F+DCL Sbjct: 223 CVGIGGDPFNGTDFIDCL 240
BLAST of FC930017 vs. ExPASy Swiss-Prot
Match: SUCA_MOUSE (Succinyl-CoA ligase [GDP-forming] subunit alpha, mitochondrial OS=Mus musculus GN=Suclg1 PE=1 SV=4) HSP 1 Score: 260.766 bits (665), Expect = 3.407e-75 Identity = 131/206 (63.59%), Postives = 154/206 (74.76%), Query Frame = 1 Query: 16 STASSVSHYRLSTSAGPAAHSRYYGSSAAASQPAVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPPFXXXXXXXXXXX-LDLVVCITEGIPQHDMVRVKAALNRQSKTRLIGPNCPGIIKPGECKIGIMPGYIHKPGRVGIVSRSGTLTYEAVFQTTVVGLGQS 630 S++S ++ RL + + S AS+ +++DKNT++ICQG TGK GTFH++QA+EYGTK+VGG TP KGG +HLGLPVFN+V EAK +T A ASVIYVPPPF + LVVCITEGIPQ DMVRVK L RQ TRLIGPNCPG+I PGECKIGIMPG+IHK GR+GIVSRSGTLTYEAV QTT VGLGQS Sbjct: 16 SSSSGLAAARLLSRTFLLQQNGIRHGSYTASRKHIYIDKNTKIICQGFTGKQGTFHSQQALEYGTKLVGGTTPGKGGQKHLGLPVFNTVKEAKEKTGATASVIYVPPPFAAAAINEAIDAEIPLVVCITEGIPQQDMVRVKHRLTRQGTTRLIGPNCPGVINPGECKIGIMPGHIHKKGRIGIVSRSGTLTYEAVHQTTQVGLGQS 221 HSP 2 Score: 42.743 bits (99), Expect = 3.407e-75 Identity = 15/18 (83.33%), Postives = 18/18 (100.00%), Query Frame = 3 Query: 633 CVGIGGDPFNGTNFVDCL 686 C+GIGGDPFNGT+F+DCL Sbjct: 223 CIGIGGDPFNGTDFIDCL 240
BLAST of FC930017 vs. ExPASy Swiss-Prot
Match: SUCA_PIG (Succinyl-CoA ligase [GDP-forming] subunit alpha, mitochondrial OS=Sus scrofa GN=SUCLG1 PE=1 SV=2) HSP 1 Score: 258.84 bits (660), Expect = 2.187e-74 Identity = 129/180 (71.67%), Postives = 143/180 (79.44%), Query Frame = 1 Query: 94 SAAASQPAVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPPFXXXXXXXXXXX-LDLVVCITEGIPQHDMVRVKAALNRQSKTRLIGPNCPGIIKPGECKIGIMPGYIHKPGRVGIVSRSGTLTYEAVFQTTVVGLGQS 630 S AS+ ++VDKNT+VICQG TGK GTFH++QA+EYGT +VGG TP KGG HLGLPVFN+V EAK +T A ASVIYVPPPF + LVVCITEGIPQ DMVRVK L RQ KTRLIGPNCPG+I PGECKIGIMPG+IHK GR+GIVSRSGTLTYEAV QTT VGLGQS Sbjct: 42 SYTASRKHLYVDKNTKVICQGFTGKQGTFHSQQALEYGTNLVGGTTPGKGGKTHLGLPVFNTVKEAKEQTGATASVIYVPPPFAAAAINEAIDAEVPLVVCITEGIPQQDMVRVKHRLLRQGKTRLIGPNCPGVINPGECKIGIMPGHIHKKGRIGIVSRSGTLTYEAVHQTTQVGLGQS 221 HSP 2 Score: 41.9726 bits (97), Expect = 2.187e-74 Identity = 16/18 (88.89%), Postives = 17/18 (94.44%), Query Frame = 3 Query: 633 CVGIGGDPFNGTNFVDCL 686 CVGIGGDPFNGT+F DCL Sbjct: 223 CVGIGGDPFNGTDFTDCL 240
BLAST of FC930017 vs. ExPASy Swiss-Prot
Match: SUCA_BOVIN (Succinyl-CoA ligase [GDP-forming] subunit alpha, mitochondrial OS=Bos taurus GN=SUCLG1 PE=2 SV=3) HSP 1 Score: 258.455 bits (659), Expect = 2.852e-74 Identity = 132/206 (64.08%), Postives = 153/206 (74.27%), Query Frame = 1 Query: 16 STASSVSHYRLSTSAGPAAHSRYYGSSAAASQPAVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPPFXXXXXXXXXXX-LDLVVCITEGIPQHDMVRVKAALNRQSKTRLIGPNCPGIIKPGECKIGIMPGYIHKPGRVGIVSRSGTLTYEAVFQTTVVGLGQS 630 S +S ++ RL + A + S S+ ++VD+NT++ICQG TGK GTFH++QA+EYGTK+VGG TP KGG HLGLPVFN+V EAK +T A ASVIYVPPPF + LVVCITEGIPQ DMVRVK L RQ KTRL+GPNCPG+I PGECKIGIMPG+IHK GRVGIVSRSGTLTYEAV QTT VGLGQS Sbjct: 16 SGSSGLAAARLLSRAFLLQQNGIRHCSYTTSRKHLYVDRNTKIICQGFTGKQGTFHSQQALEYGTKLVGGTTPGKGGKTHLGLPVFNTVKEAKEQTGATASVIYVPPPFAVAAIDEAIEAEVSLVVCITEGIPQQDMVRVKHKLLRQGKTRLVGPNCPGVINPGECKIGIMPGHIHKKGRVGIVSRSGTLTYEAVHQTTQVGLGQS 221 HSP 2 Score: 41.9726 bits (97), Expect = 2.852e-74 Identity = 16/18 (88.89%), Postives = 17/18 (94.44%), Query Frame = 3 Query: 633 CVGIGGDPFNGTNFVDCL 686 CVGIGGDPFNGT+F DCL Sbjct: 223 CVGIGGDPFNGTDFTDCL 240
BLAST of FC930017 vs. ExPASy Swiss-Prot
Match: SUCA_DROME (Succinyl-CoA ligase [GDP-forming] subunit alpha, mitochondrial OS=Drosophila melanogaster GN=Scsalpha PE=2 SV=3) HSP 1 Score: 240.736 bits (613), Expect = 2.598e-69 Identity = 115/167 (68.86%), Postives = 138/167 (82.63%), Query Frame = 1 Query: 133 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPP-FXXXXXXXXXXXLDLVVCITEGIPQHDMVRVKAALNRQSKTRLIGPNCPGIIKPGECKIGIMPGYIHKPGRVGIVSRSGTLTYEAVFQTTVVGLGQS 630 ++RVICQG TGK GTFH++QA+EYGTK+VGG++PKKGGT+HLGLPVF SVAEAK T +A+VIYVPPP + L+VCITEG+PQHDMV+VK AL QSK+RL+GPNCPGII P +CKIGIMPG+IHK G++G+VSRSGTLTYEAV QTT VGLGQ+ Sbjct: 37 DSRVICQGFTGKQGTFHSQQALEYGTKLVGGISPKKGGTQHLGLPVFASVAEAKKATDPHATVIYVPPPGAAAAIIEALEAEIPLIVCITEGVPQHDMVKVKHALISQSKSRLVGPNCPGIIAPEQCKIGIMPGHIHKRGKIGVVSRSGTLTYEAVHQTTEVGLGQT 203 HSP 2 Score: 43.1282 bits (100), Expect = 2.598e-69 Identity = 16/18 (88.89%), Postives = 18/18 (100.00%), Query Frame = 3 Query: 633 CVGIGGDPFNGTNFVDCL 686 CVGIGGDPFNGT+F+DCL Sbjct: 205 CVGIGGDPFNGTDFIDCL 222 The following BLAST results are available for this feature:
BLAST of FC930017 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 46
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Sequences
The
following sequences are available for this feature:
EST sequence >FC930017 ID=FC930017; Name=FC930017; organism=Citrus clementina; type=EST; length=688bpback to top |