FC930026

Overview
NameFC930026
Unique NameFC930026
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length711
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig13366 contig Ccv1_Contig13366:249..960. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of FC930026 vs. ExPASy Swiss-Prot
Match: KPK19_ARATH (Serine/threonine-protein kinase AtPK19 OS=Arabidopsis thaliana GN=ATPK19 PE=2 SV=2)

HSP 1 Score: 106.301 bits (264), Expect = 1.682e-22
Identity = 60/116 (51.72%), Postives = 74/116 (63.79%), Query Frame = 2 
Query:  311 MVSSQLSSLNGDCAGKPFLNQLLLPRGPPDALSSDYVEFDFSDVFGPAPVQASIEVGGEISYANELVYDQPAVIHSRSHSLVGPSSYVSQSLKLSKLTLHEAEDSLGLVEGINEET 658
            MVSSQ S  N +  GKPF   L L   PP ++  D +E  FSDVFGP P   S E       A ++ YD+PAV++SRSHSLVGPS  VS SLK++KLTL E EDS+ LVE +  E+
Sbjct:    1 MVSSQCSVANKNQTGKPFQKHLSLSISPPKSVLGDNLELQFSDVFGPMPEANSEE-------ACDVAYDEPAVVYSRSHSLVGPSLVVSHSLKMNKLTLRETEDSVDLVECVEGES 109
[Close]
BLAST of FC930026 vs. ExPASy Swiss-Prot
Match: KPK1_ARATH (Serine/threonine-protein kinase AtPK1/AtPK6 OS=Arabidopsis thaliana GN=ATPK1 PE=1 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 8.084e-17
Identity = 49/103 (47.57%), Postives = 65/103 (63.11%), Query Frame = 2 
Query:  371 QLLLPRGPPDALSSDYVEFDFSDVFGPAPVQASIEVGGEISYANELVYDQPAVIHSRSHSLVGPSSYVSQSLKLSKLTLHEAEDSLGLVEGINEETQEGPNTF 679
            Q  L   P +++  D VE +FSDVFGP P +A           N++ YD+PAV++SRSHSLVGP S  S SLKL+KLTL E EDS+ LVE +  E+ +  + F
Sbjct:   15 QQYLSISPSNSVLKDDVELEFSDVFGPLPEEA-----------NDIAYDEPAVVYSRSHSLVGPCSLDSHSLKLTKLTLLETEDSIDLVECLEGESLKENDDF 106
The following BLAST results are available for this feature:
BLAST of FC930026 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
KPK19_ARATH1.682e-2251.72Serine/threonine-protein kinase AtPK19 OS=Arabidop... [more]
KPK1_ARATH8.084e-1747.57Serine/threonine-protein kinase AtPK1/AtPK6 OS=Ara... [more]
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Properties
Property NameValue
Genbank descriptionC34003A04EF PostHarvC1 Citrus clementina cDNA clone C34003A04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930026 ID=FC930026; Name=FC930026; organism=Citrus clementina; type=EST; length=711bp
GCGTTTCTTTTGCAACCTTCGCAGCTCAATTACGTGATCTTCATGAATTC
AAGAAGCACTGTTGCATTCACTGTTTCCTGCAAATCGGGAAACAAGAAGG
ATTTCTTTTACTGGATTTTGGTCTGCTTGCCCCCGACTTTCCTTGGAACT
TTGATTGCATACGTCAACTTCTTCTTGTTCAAGGCTATTGTCAGGTGTCC
GTCATCGTCTCTTCGCATCTTGGAGACTTTTGGAGAGATCTGTCTATAGC
AGTGAGTATTTTTTTAGCTTAGTTGTCTGCTGTGTGCTTGGCGAAGTTGA
TACAAGCAACATGGTTTCTTCGCAATTGTCTAGCTTGAATGGGGATTGTG
CGGGGAAGCCTTTCCTGAATCAGTTGCTTCTTCCAAGGGGACCACCTGAT
GCTCTTTCCTCTGATTATGTTGAGTTTGATTTCTCTGATGTATTTGGTCC
TGCTCCAGTTCAAGCATCTATAGAAGTTGGTGGTGAGATCTCTTATGCAA
ATGAATTAGTGTATGATCAGCCAGCTGTCATCCACAGCCGTTCACATTCT
TTGGTTGGCCCTTCAAGTTATGTTAGCCAATCATTGAAGCTTAGCAAGCT
CACCTTGCATGAGGCAGAAGATTCTTTGGGACTTGTGGAGGGAATCAATG
AAGAGACACAGGAAGGGCCTAACACCTTTCTGTTGTTGATGCTGCTCTGG
GGAAACCACTG
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