FC930038

Overview
NameFC930038
Unique NameFC930038
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length725
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC930038_ssr129 microsatellite FC930038_ssr129:129..140. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig12798 contig Ccv1_Contig12798:104..828. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC930038 vs. ExPASy Swiss-Prot
Match: AMPL3_ARATH (Leucine aminopeptidase 3, chloroplastic OS=Arabidopsis thaliana GN=At4g30920 PE=2 SV=2)

HSP 1 Score: 230.335 bits (586), Expect = 7.940e-60
Identity = 120/185 (64.86%), Postives = 144/185 (77.84%), Query Frame = 2
Query:  170 MAHSIARATLGLTKPAQIDPLKISFAAKEVDVVEWKGDILAVGVTEKDMGKDDNSKFQNSILKKLDAQLGGLLSEASSEEDFTGKAGQSTVIRLPGIGSKRVGLIGLGQSASRAGDFRSLGESXXXXXXXXXXXXXXXXLASSDGLSDESKLTAASAVASGTVLGTFEDNRYRSESRNCITQSVD 724
            MAH+I+ ATLGLT+   +D  KISF+ KE+DV EWKGDILAVGVTEKDM KD NSKF+N ILKKLDA LGGLL++ SSEEDF+GK GQSTV+RLPG+GSKRVGLIGLG+SAS    F+SLGE+                LASS+ +S+ESKL +ASA+ASGTVLG FED+RY+SES+    +SVD
Sbjct:   57 MAHTISHATLGLTQANSVDHPKISFSGKEIDVTEWKGDILAVGVTEKDMAKDVNSKFENPILKKLDAHLGGLLADVSSEEDFSGKPGQSTVLRLPGLGSKRVGLIGLGKSASTPSAFQSLGEAVAAAAKASQASSVAVVLASSESVSNESKLCSASAIASGTVLGLFEDSRYKSESKKPSLKSVD 241          
BLAST of FC930038 vs. ExPASy Swiss-Prot
Match: AMPL2_ARATH (Leucine aminopeptidase 2, chloroplastic OS=Arabidopsis thaliana GN=At4g30910 PE=2 SV=1)

HSP 1 Score: 228.794 bits (582), Expect = 2.310e-59
Identity = 121/192 (63.02%), Postives = 145/192 (75.52%), Query Frame = 2
Query:  146 LFCRGKLRMAHSIARATLGLTKPAQIDPLKISFAAKEVDVVEWKGDILAVGVTEKDMGKDDNSKFQNSILKKLDAQLGGLLSEASSEEDFTGKAGQSTVIRLPGIGSKRVGLIGLGQSASRAGDFRSLGESXXXXXXXXXXXXXXXXLASSDGLSDESKLTAASAVASGTVLGTFEDNRYRSESRNCITQSV 721
            L+C  K   AH+IA ATLGLT+   +D  KISF+ KE+DV EWKGDILAVGVTEKDM KD NSKF+N ILKKLDA LGGLL++ S+EEDF+GK GQSTV+RLPG+GSKRVGLIGLG+SAS    F+SLGE+                LASS+  SDESKL++AS +ASGTVLG FED+RY+SES+    +SV
Sbjct:   49 LYCSSKAT-AHTIAHATLGLTQANSVDHPKISFSGKEIDVTEWKGDILAVGVTEKDMAKDANSKFENPILKKLDAHLGGLLADVSAEEDFSGKPGQSTVLRLPGLGSKRVGLIGLGKSASTPSAFQSLGEAVAAAAKASQASSVAVVLASSESFSDESKLSSASDIASGTVLGLFEDSRYKSESKKPSLKSV 239          
BLAST of FC930038 vs. ExPASy Swiss-Prot
Match: AMPL2_SOLLC (Leucine aminopeptidase 2, chloroplastic OS=Solanum lycopersicum GN=LAPA2 PE=2 SV=1)

HSP 1 Score: 224.942 bits (572), Expect = 3.336e-58
Identity = 118/195 (60.51%), Postives = 144/195 (73.85%), Query Frame = 2
Query:  140 PLLFCRGKLRMAHSIARATLGLTKPAQIDPLKISFAAKEVDVVEWKGDILAVGVTEKDMGKDDNSKFQNSILKKLDAQLGGLLSEASSEEDFTGKAGQSTVIRLPGIGSKRVGLIGLGQSASRAGDFRSLGESXXXXXXXXXXXXXXXXLASSDGLSDESKLTAASAVASGTVLGTFEDNRYRSESRNCITQSVD 724
            PL   R K RMAHSIAR TLGLT   Q D  KISFAAKE+D+VEWKGDIL VG TEKD+ +D NSKFQN +L+KLD++L GLLSEASSEEDF+GKAGQST++RLPG+GSKR+ L+GLG   S    +R LGE+                LAS+DGLS E KL++ASA+ +G VLGTFEDNR++SES+    +S+D
Sbjct:   36 PLCSRRAK-RMAHSIARDTLGLTHTNQSDAPKISFAAKEIDLVEWKGDILTVGATEKDLARDGNSKFQNPLLQKLDSKLSGLLSEASSEEDFSGKAGQSTILRLPGLGSKRIALVGLGSPTSSTAAYRCLGEAAAAAAKSAQASNIAIALASTDGLSAELKLSSASAITTGAVLGTFEDNRFKSESKKPTLKSLD 229          
BLAST of FC930038 vs. ExPASy Swiss-Prot
Match: AMPL1_ARATH (Leucine aminopeptidase 1 OS=Arabidopsis thaliana GN=PM25 PE=1 SV=1)

HSP 1 Score: 206.838 bits (525), Expect = 9.401e-53
Identity = 112/185 (60.54%), Postives = 133/185 (71.89%), Query Frame = 2
Query:  170 MAHSIARATLGLTKPAQIDPLKISFAAKEVDVVEWKGDILAVGVTEKDMGKDDNSKFQNSILKKLDAQLGGLLSEASSEEDFTGKAGQSTVIRLPGIGSKRVGLIGLGQSASRAGDFRSLGESXXXXXXXXXXXXXXXXLASSDGLSDESKLTAASAVASGTVLGTFEDNRYRSESRNCITQSVD 724
            MAH     TLGLT+P   +P KISF AKE+DV+EWKGDIL VGVTEKD+ KD NSKF+N IL K+DA L GLL++ SSEEDFTGK GQSTV+RLPG+GSKR+ LIGLGQS S    F SLGE+                LASS  +SDESKL++ SA+ASG VLG FED RY+SES+    ++VD
Sbjct:    1 MAH-----TLGLTQPNSTEPHKISFTAKEIDVIEWKGDILVVGVTEKDLAKDGNSKFENPILSKVDAHLSGLLAQVSSEEDFTGKPGQSTVLRLPGLGSKRIALIGLGQSVSSPVAFHSLGEAVATVSKASQSTSAAIVLASS--VSDESKLSSVSALASGIVLGLFEDGRYKSESKKPSLKAVD 178          
BLAST of FC930038 vs. ExPASy Swiss-Prot
Match: AMPL2_ORYSJ (Leucine aminopeptidase 2, chloroplastic OS=Oryza sativa subsp. japonica GN=Os02g0794700 PE=2 SV=1)

HSP 1 Score: 197.208 bits (500), Expect = 7.449e-50
Identity = 107/194 (55.15%), Postives = 135/194 (69.59%), Query Frame = 2
Query:  161 KLRMAHSIARAT-----LGLTKPAQIDPLKISFAAKEVDVVEWKGDILAVGVTEKDMGKDDNSKFQNSILKKLDAQLGGLLSEASSEEDFTGKAGQSTVIRLPGIGSKRVGLIGLGQSA-SRAGDFRSLGESXXXXXXXXXXXXXXXXLASSDGLSDESKLTAASAVASGTVLGTFEDNRYRSESRNCITQSVD 724
            + RM H+ A A      LGLTKP  ++P ++SFAAK+V+  EWKGDILA+ VTE D+ K  +SKF+N++LKKLD QLGGLLSEAS+EEDFTGKAGQS V+RLPG G KRVGLIGLGQ+A S     + +GES                 AS  G+ ++ KLTAA+A+ASGTVLG  ED+RY+SES+    + VD
Sbjct:   64 RARMGHTAAAAAAAGPALGLTKPNAVEPPQVSFAAKDVEFSEWKGDILAIAVTENDLVKGSDSKFENAVLKKLDGQLGGLLSEASAEEDFTGKAGQSVVLRLPGQGFKRVGLIGLGQNAPSTTTACKGIGESVASVAKSAQASSAAIVFASVGGIQEDFKLTAAAAIASGTVLGLHEDSRYKSESKKVHLKQVD 257          
BLAST of FC930038 vs. ExPASy Swiss-Prot
Match: AMPL_SOLTU (Leucine aminopeptidase, chloroplastic OS=Solanum tuberosum GN=LAP PE=2 SV=2)

HSP 1 Score: 193.356 bits (490), Expect = 1.076e-48
Identity = 103/195 (52.82%), Postives = 136/195 (69.74%), Query Frame = 2
Query:  140 PLLFCRGKLRMAHSIARATLGLTKPAQIDPLKISFAAKEVDVVEWKGDILAVGVTEKDMGKDDNSKFQNSILKKLDAQLGGLLSEASSEEDFTGKAGQSTVIRLPGIGSKRVGLIGLGQSASRAGDFRSLGESXXXXXXXXXXXXXXXXLASSDGLSDESKLTAASAVASGTVLGTFEDNRYRSESRNCITQSVD 724
            PL   R K R+ H IA  TLGLT+P + D  KIS  AK+ DVV+W+GD+LA+G TE D+ +DDNSKF+N +L++LD++L GLLS ASSEEDF+GK+GQS  +RLPG    R+ L+GLG SAS    + SLGE+                LAS+DGLS ESK+ +ASA+A+G +LG FEDNR+RSES+    +S+D
Sbjct:   41 PLCSRRSK-RIVHCIAGDTLGLTRPNESDAPKISIGAKDTDVVQWQGDLLAIGATENDLARDDNSKFKNPLLQRLDSKLNGLLSAASSEEDFSGKSGQSINLRLPG---GRITLVGLGSSASSPTSYHSLGEAAAAAAKSAQARNIAVSLASTDGLSAESKINSASAIATGVMLGIFEDNRFRSESKTPALESLD 231          
BLAST of FC930038 vs. ExPASy Swiss-Prot
Match: AMPL1_SOLLC (Leucine aminopeptidase 1, chloroplastic OS=Solanum lycopersicum GN=LAPA1 PE=2 SV=1)

HSP 1 Score: 191.815 bits (486), Expect = 3.130e-48
Identity = 102/198 (51.52%), Postives = 136/198 (68.69%), Query Frame = 2
Query:  131 PPPPLLFCRGKLRMAHSIARATLGLTKPAQIDPLKISFAAKEVDVVEWKGDILAVGVTEKDMGKDDNSKFQNSILKKLDAQLGGLLSEASSEEDFTGKAGQSTVIRLPGIGSKRVGLIGLGQSASRAGDFRSLGESXXXXXXXXXXXXXXXXLASSDGLSDESKLTAASAVASGTVLGTFEDNRYRSESRNCITQSVD 724
            P  PL   R K R+ H IA  TLGLT+P + D  KIS  AK+  VV+W+GD+LA+G TE DM +D+NSKF+N +L++LD++L GLLS ASSEEDF+GK+GQS  +R PG    R+ L+GLG SAS    + SLG++                LAS+DGLS ESK+ +ASA+A+G VLG+FEDNR+RSES+    +S+D
Sbjct:   38 PVTPLCSKRSK-RIVHCIAGDTLGLTRPNESDAPKISIGAKDTAVVQWQGDLLAIGATENDMARDENSKFKNPLLQQLDSELNGLLSAASSEEDFSGKSGQSVNLRFPG---GRITLVGLGSSASSPTSYHSLGQAAAAAAKSSQARNIAVALASTDGLSAESKINSASAIATGVVLGSFEDNRFRSESKKSTLESLD 231          
BLAST of FC930038 vs. ExPASy Swiss-Prot
Match: AMPL1_ORYSJ (Putative leucine aminopeptidase 1 OS=Oryza sativa subsp. japonica GN=Os12g0434400 PE=3 SV=2)

HSP 1 Score: 133.65 bits (335), Expect = 1.011e-30
Identity = 85/183 (46.45%), Postives = 112/183 (61.20%), Query Frame = 2
Query:  212 PAQIDPLKISFAAKEVDVVEWKGDILAVGVTEKDMGK--DDNSKFQN--SILKKLDAQLGGLLSEASSEEDFTGKAGQSTVIRLPGI----GSKRVGLIGLGQS-ASRAGDFRSLGESXXXXXXXXXXXXXXXXLASSDG---LSDESKLTAASAVASGTVLGTFEDNRYRSESRNCITQSVD 724
            P  +DP +ISFAAK++D+ EW+GDILAV VTE D+ K    +S+F N  + L KLD +LGGLLSEAS+EE+F G+AGQS  +RLP      G KRV L+G+G +  S A   RS GE+                LAS        ++ +L AA+AVASG VLG  ED RY+S+S+    + VD
Sbjct:    2 PNVVDPPQISFAAKDMDLTEWEGDILAVLVTETDVSKATSSSSRFTNAAAALAKLDGELGGLLSEASAEEEFAGRAGQSVALRLPTAPGLHGFKRVCLVGVGNNMPSSAAACRSTGETIAAVAKSAQARSAAVALASPPPGWVQGEDLRLNAAAAVASGVVLGLHEDRRYKSDSKKVHLKQVD 184          
The following BLAST results are available for this feature:
BLAST of FC930038 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
AMPL3_ARATH7.940e-6064.86Leucine aminopeptidase 3, chloroplastic OS=Arabido... [more]
AMPL2_ARATH2.310e-5963.02Leucine aminopeptidase 2, chloroplastic OS=Arabido... [more]
AMPL2_SOLLC3.336e-5860.51Leucine aminopeptidase 2, chloroplastic OS=Solanum... [more]
AMPL1_ARATH9.401e-5360.54Leucine aminopeptidase 1 OS=Arabidopsis thaliana G... [more]
AMPL2_ORYSJ7.449e-5055.15Leucine aminopeptidase 2, chloroplastic OS=Oryza s... [more]
AMPL_SOLTU1.076e-4852.82Leucine aminopeptidase, chloroplastic OS=Solanum t... [more]
AMPL1_SOLLC3.130e-4851.52Leucine aminopeptidase 1, chloroplastic OS=Solanum... [more]
AMPL1_ORYSJ1.011e-3046.45Putative leucine aminopeptidase 1 OS=Oryza sativa ... [more]
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Properties
Property NameValue
Genbank descriptionC34003B04EF PostHarvC1 Citrus clementina cDNA clone C34003B04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930038 ID=FC930038; Name=FC930038; organism=Citrus clementina; type=EST; length=725bp
GATGTCCGCCATTGTCGTATCTTTGACGACTTGCCTCTCTTGGTCTTCTT
CACCATCATCGTCTTCTTTGTTATTCTCGAAATTAGGATTAGGATCTGCA
GCTGCTTTTAGACGTTATTGTGCGCCGTCACCACCACCACCCTTGTTGTT
TTGTAGAGGAAAGCTCAGGATGGCTCACTCTATTGCTCGTGCCACTCTTG
GCCTCACTAAGCCTGCTCAAATCGACCCTCTCAAGATCTCTTTTGCCGCA
AAAGAGGTTGATGTGGTGGAATGGAAAGGTGATATACTTGCAGTGGGTGT
CACAGAGAAAGACATGGGCAAGGATGATAATTCAAAATTCCAGAACTCAA
TTTTGAAAAAGCTAGATGCCCAATTGGGCGGTCTTTTATCTGAAGCTTCT
TCTGAGGAGGATTTCACTGGAAAAGCTGGCCAGTCAACTGTTATTAGACT
CCCTGGCATTGGCTCCAAAAGGGTAGGCTTGATTGGTCTAGGCCAGTCAG
CTTCAAGGGCCGGGGACTTTCGCAGTCTTGGAGAGTCTGTTGCTGCGGCT
GCAAAGGCTGCTCAAGCCAGCAACGTTGCTGTTGTGCTTGCCTCTTCTGA
CGGTCTCTCAGATGAATCAAAGCTTACTGCTGCTTCGGCAGTGGCATCTG
GAACTGTTTTGGGGACATTTGAAGATAATCGGTATAGGTCTGAGTCAAGA
AACTGTATCACTCAGTCTGTGGACA
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