FC930065

Overview
NameFC930065
Unique NameFC930065
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length698
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC930065_ssr148 microsatellite FC930065_ssr148:148..162. BLAST: Citrus ESTs to Prunus persica proteins V1
FC930065_ssr194 microsatellite FC930065_ssr194:194..211. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig11566 contig Ccv1_Contig11566:13..710. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC930065 vs. ExPASy Swiss-Prot
Match: AL2B7_ARATH (Aldehyde dehydrogenase family 2 member B7, mitochondrial OS=Arabidopsis thaliana GN=ALDH2B7 PE=2 SV=2)

HSP 1 Score: 309.686 bits (792), Expect = 9.690e-84
Identity = 153/216 (70.83%), Postives = 176/216 (81.48%), Query Frame = 1
Query:   52 MAARRIPLLLSRSFTSSSPTLFS-RGRDSSLCRXXXXXXXSCGYSTVSSAAAAAEDPITPPVKVDYTQLLINGQFVDSASGKTFPTLDPRTGDVITHVAEGEAEDVNRAVSAARKAFDEGPWPRKTAYERSKIILRFADLLERHNDEIAALETWDNGKPFEQSAQTEVPMTTRLFRYYAGWADKIQGLTAPADGPYHVQTLHEPIGVAGQIIPWNF 696
            MA+RR+  LLSRSF SSS ++FS RG +              G    S+ AAA E+ ITPPVKV++TQLLI G+FVD+ SGKTFPTLDPR G+VI  V+EG+AEDVNRAV+AARKAFDEGPWP+ TAYERSKI+ RFADL+E+HNDEIAALETWDNGKP+EQSAQ EVPM  R+FRYYAGWADKI G+T P DGP+HVQTLHEPIGVAGQIIPWNF
Sbjct:    1 MASRRVSSLLSRSFMSSSRSIFSLRGMNR-------------GAQRYSNLAAAVENTITPPVKVEHTQLLIGGRFVDAVSGKTFPTLDPRNGEVIAQVSEGDAEDVNRAVAAARKAFDEGPWPKMTAYERSKILFRFADLIEKHNDEIAALETWDNGKPYEQSAQIEVPMLARVFRYYAGWADKIHGMTMPGDGPHHVQTLHEPIGVAGQIIPWNF 203          
BLAST of FC930065 vs. ExPASy Swiss-Prot
Match: AL2B4_ARATH (Aldehyde dehydrogenase family 2 member B4, mitochondrial OS=Arabidopsis thaliana GN=ALDH2B4 PE=1 SV=1)

HSP 1 Score: 294.664 bits (753), Expect = 3.226e-79
Identity = 146/216 (67.59%), Postives = 174/216 (80.56%), Query Frame = 1
Query:   52 MAARRIPLLLSRSFTSSSPTLF-SRGRDSSLCRXXXXXXXSCGYSTVSSAAAAAEDPITPPVKVDYTQLLINGQFVDSASGKTFPTLDPRTGDVITHVAEGEAEDVNRAVSAARKAFDEGPWPRKTAYERSKIILRFADLLERHNDEIAALETWDNGKPFEQSAQTEVPMTTRLFRYYAGWADKIQGLTAPADGPYHVQTLHEPIGVAGQIIPWNF 696
            MAARR+  LLSRSF++SSP LF S+GR+   C                +++AAAE+ I P V+V +TQLLING FVDSASGKTFPTLDPRTG+VI HVAEG+AED+NRAV AAR AFDEGPWP+ +AYERS+++LRFADL+E+H++E+A+LETWDNGKP++QS   E+PM  RLFRYYAGWADKI GLT PADG Y V TLHEPIGVAGQIIPWNF
Sbjct:    1 MAARRVSSLLSRSFSASSPLLFRSQGRN---CYNGGILRR------FGTSSAAAEEIINPSVQVSHTQLLINGNFVDSASGKTFPTLDPRTGEVIAHVAEGDAEDINRAVKAARTAFDEGPWPKMSAYERSRVLLRFADLVEKHSEELASLETWDNGKPYQQSLTAEIPMFARLFRYYAGWADKIHGLTIPADGNYQVHTLHEPIGVAGQIIPWNF 207          
BLAST of FC930065 vs. ExPASy Swiss-Prot
Match: ALDH2_BOVIN (Aldehyde dehydrogenase, mitochondrial OS=Bos taurus GN=ALDH2 PE=1 SV=2)

HSP 1 Score: 178.718 bits (452), Expect = 2.580e-44
Identity = 93/175 (53.14%), Postives = 114/175 (65.14%), Query Frame = 1
Query:  175 GYSTVSSAAAAAEDPITPPVKVDYTQLLINGQFVDSASGKTFPTLDPRTGDVITHVAEGEAEDVNRAVSAARKAFDEG-PWPRKTAYERSKIILRFADLLERHNDEIAALETWDNGKPFEQSAQTEVPMTTRLFRYYAGWADKIQGLTAPADGPYHVQTLHEPIGVAGQIIPWNF 696
            G   +S+A  A   P   P +V Y Q+ IN ++ D+ S KTFPT++P TGDVI HVAEG+  DV+RAV AAR AF  G PW R  A ER +++ R ADL+ER    +AALET DNGKP+  S   ++ M  +  RYYAGWADK  G T P DG Y   T HEP+GV GQIIPWNF
Sbjct:   17 GRRLLSAATQAVPTPNQQP-EVLYNQIFINNEWHDAVSKKTFPTVNPSTGDVICHVAEGDKADVDRAVKAARAAFQLGSPWRRMDASERGRLLNRLADLIERDRTYLAALETLDNGKPYIISYLVDLDMVLKCLRYYAGWADKYHGKTIPIDGDYFSYTRHEPVGVCGQIIPWNF 190          
BLAST of FC930065 vs. ExPASy Swiss-Prot
Match: ALDH2_PIG (Aldehyde dehydrogenase, mitochondrial OS=Sus scrofa GN=ALDH2 PE=2 SV=1)

HSP 1 Score: 176.792 bits (447), Expect = 9.803e-44
Identity = 90/175 (51.43%), Postives = 113/175 (64.57%), Query Frame = 1
Query:  175 GYSTVSSAAAAAEDPITPPVKVDYTQLLINGQFVDSASGKTFPTLDPRTGDVITHVAEGEAEDVNRAVSAARKAFDEG-PWPRKTAYERSKIILRFADLLERHNDEIAALETWDNGKPFEQSAQTEVPMTTRLFRYYAGWADKIQGLTAPADGPYHVQTLHEPIGVAGQIIPWNF 696
            G   +S+A   A        ++ Y Q+ IN ++ D+ S KTFPT++P TGDVI HVAEG+ EDV+RAV AAR AF  G PW R  A +R +++ R ADL+ER    +AALET DNGKP+  S   ++ M  +  RYYAGWADK  G T P DG Y   T HEP+GV GQIIPWNF
Sbjct:   17 GRRLLSAAPTQAVPAPNQQPEIFYNQIFINNEWHDAISKKTFPTVNPSTGDVICHVAEGDKEDVDRAVEAARAAFQLGSPWRRLDASDRGRLLNRLADLIERDRTYLAALETLDNGKPYVISYLVDLDMVLKCLRYYAGWADKYHGKTLPIDGDYFSYTRHEPVGVCGQIIPWNF 191          
BLAST of FC930065 vs. ExPASy Swiss-Prot
Match: AL1B1_RAT (Aldehyde dehydrogenase X, mitochondrial OS=Rattus norvegicus GN=Aldh1b1 PE=1 SV=1)

HSP 1 Score: 175.637 bits (444), Expect = 2.184e-43
Identity = 91/175 (52.00%), Postives = 119/175 (68.00%), Query Frame = 1
Query:  175 GYSTVSSAAAAAEDPITPPVKVDYTQLLINGQFVDSASGKTFPTLDPRTGDVITHVAEGEAEDVNRAVSAARKAFDEG-PWPRKTAYERSKIILRFADLLERHNDEIAALETWDNGKPFEQSAQTEVPMTTRLFRYYAGWADKIQGLTAPADGPYHVQTLHEPIGVAGQIIPWNF 696
            G +T  S AAA  +PI  P ++ Y QL IN ++ D+ S KTFPT++P TG+VI HVAEG+  DV+ AV AAR+AF  G PW R  A ER +++ R ADL+ER    +A+LET DNGKPF++S   ++    +++RY AGWADK  G T P DG +   T HEP+GV GQIIPWNF
Sbjct:   16 GRTTSYSTAAALPNPIPNP-EIRYNQLFINNEWHDAVSKKTFPTVNPTTGEVIGHVAEGDRADVDLAVRAAREAFRLGSPWRRMDASERGRLLNRLADLVERDRVYLASLETLDNGKPFQESYVLDLDEVIKVYRYLAGWADKWHGKTIPMDGEHFCFTRHEPVGVCGQIIPWNF 189          
BLAST of FC930065 vs. ExPASy Swiss-Prot
Match: AL1B1_PONAB (Aldehyde dehydrogenase X, mitochondrial OS=Pongo abelii GN=ALDH1B1 PE=2 SV=1)

HSP 1 Score: 175.637 bits (444), Expect = 2.184e-43
Identity = 90/169 (53.25%), Postives = 116/169 (68.64%), Query Frame = 1
Query:  193 SAAAAAEDPITPPVKVDYTQLLINGQFVDSASGKTFPTLDPRTGDVITHVAEGEAEDVNRAVSAARKAFDEG-PWPRKTAYERSKIILRFADLLERHNDEIAALETWDNGKPFEQSAQTEVPMTTRLFRYYAGWADKIQGLTAPADGPYHVQTLHEPIGVAGQIIPWNF 696
            S+AAA   PI  P  + Y QL IN ++ D+ S KTFPT++P TG+VI HVAEG+  DV+RAV AAR+AF  G PW R  A ER +++   ADL+ER    +A+LET DNGKPF++S   ++    +++RY+AGWADK  G T P DG +   T HEPIGV GQIIPWNF
Sbjct:   20 SSAAALPSPILNP-DIPYNQLFINNEWQDAVSKKTFPTVNPTTGEVIGHVAEGDRADVDRAVKAAREAFRLGSPWRRMDASERGRLLNCLADLVERDRVYLASLETLDNGKPFQESYALDLDEVIKVYRYFAGWADKWHGKTIPMDGQHFCFTRHEPIGVCGQIIPWNF 187          
BLAST of FC930065 vs. ExPASy Swiss-Prot
Match: AL1B1_MOUSE (Aldehyde dehydrogenase X, mitochondrial OS=Mus musculus GN=Aldh1b1 PE=2 SV=1)

HSP 1 Score: 175.637 bits (444), Expect = 2.184e-43
Identity = 90/175 (51.43%), Postives = 120/175 (68.57%), Query Frame = 1
Query:  175 GYSTVSSAAAAAEDPITPPVKVDYTQLLINGQFVDSASGKTFPTLDPRTGDVITHVAEGEAEDVNRAVSAARKAFDEG-PWPRKTAYERSKIILRFADLLERHNDEIAALETWDNGKPFEQSAQTEVPMTTRLFRYYAGWADKIQGLTAPADGPYHVQTLHEPIGVAGQIIPWNF 696
            G +T  S AAA  +PI  P ++ Y +L IN ++ D+ S KTFPT++P TG+VI HVAEG+  DV+ AV AAR+AF  G PW R  A ER +++ R ADL+ER    +A+LET DNGKPF++S   ++    +++RY+AGWADK  G T P DG +   T HEP+GV GQIIPWNF
Sbjct:   16 GRTTSYSTAAALPNPIPNP-EICYNKLFINNEWHDAVSKKTFPTVNPTTGEVIGHVAEGDRADVDLAVKAAREAFRLGSPWRRMDASERGRLLNRLADLVERDRVYLASLETLDNGKPFQESYVLDLDEVIKVYRYFAGWADKWHGKTIPMDGEHFCFTRHEPVGVCGQIIPWNF 189          
BLAST of FC930065 vs. ExPASy Swiss-Prot
Match: AL1B1_HUMAN (Aldehyde dehydrogenase X, mitochondrial OS=Homo sapiens GN=ALDH1B1 PE=1 SV=2)

HSP 1 Score: 175.637 bits (444), Expect = 2.184e-43
Identity = 89/169 (52.66%), Postives = 116/169 (68.64%), Query Frame = 1
Query:  193 SAAAAAEDPITPPVKVDYTQLLINGQFVDSASGKTFPTLDPRTGDVITHVAEGEAEDVNRAVSAARKAFDEG-PWPRKTAYERSKIILRFADLLERHNDEIAALETWDNGKPFEQSAQTEVPMTTRLFRYYAGWADKIQGLTAPADGPYHVQTLHEPIGVAGQIIPWNF 696
            S+AAA   PI  P  + Y QL IN ++ D+ S KTFPT++P TG+VI HVAEG+  DV+RAV AAR+AF  G PW R  A ER +++   ADL+ER    +A+LET DNGKPF++S   ++    +++RY+AGWADK  G T P DG +   T HEP+GV GQIIPWNF
Sbjct:   20 SSAAALPSPILNP-DIPYNQLFINNEWQDAVSKKTFPTVNPTTGEVIGHVAEGDRADVDRAVKAAREAFRLGSPWRRMDASERGRLLNLLADLVERDRVYLASLETLDNGKPFQESYALDLDEVIKVYRYFAGWADKWHGKTIPMDGQHFCFTRHEPVGVCGQIIPWNF 187          
BLAST of FC930065 vs. ExPASy Swiss-Prot
Match: ALDH2_HORSE (Aldehyde dehydrogenase, mitochondrial OS=Equus caballus GN=ALDH2 PE=1 SV=1)

HSP 1 Score: 170.629 bits (431), Expect = 7.025e-42
Identity = 88/170 (51.76%), Postives = 111/170 (65.29%), Query Frame = 1
Query:  199 AAAAEDPITPP---VKVDYTQLLINGQFVDSASGKTFPTLDPRTGDVITHVAEGEAEDVNRAVSAARKAFDEG-PWPRKTAYERSKIILRFADLLERHNDEIAALETWDNGKPFEQSAQTEVPMTTRLFRYYAGWADKIQGLTAPADGPYHVQTLHEPIGVAGQIIPWNF 696
            AAAA   +  P    +V Y Q+ IN ++ D+ S KTFPT++P TG+VI  VA G+ EDV+RAV AAR AF  G PW R  A +R +++ R ADL+ER    +AALET DNGKP+  S   ++ M  +  RYYAGWADK  G T P DG +   T HEP+GV GQIIPWNF
Sbjct:    1 AAAATQAVPAPNQQPEVFYNQIFINNEWHDAVSKKTFPTVNPSTGEVICQVAAGDKEDVDRAVKAARAAFQLGSPWRRMDASDRGRLLNRLADLIERDRTYLAALETLDNGKPYVISYLVDLDMVLKCLRYYAGWADKYHGKTIPIDGDFFSYTRHEPVGVCGQIIPWNF 170          
BLAST of FC930065 vs. ExPASy Swiss-Prot
Match: ALDH2_MOUSE (Aldehyde dehydrogenase, mitochondrial OS=Mus musculus GN=Aldh2 PE=1 SV=1)

HSP 1 Score: 168.703 bits (426), Expect = 2.670e-41
Identity = 86/171 (50.29%), Postives = 111/171 (64.91%), Query Frame = 1
Query:  187 VSSAAAAAEDPITPPVKVDYTQLLINGQFVDSASGKTFPTLDPRTGDVITHVAEGEAEDVNRAVSAARKAFDEG-PWPRKTAYERSKIILRFADLLERHNDEIAALETWDNGKPFEQSAQTEVPMTTRLFRYYAGWADKIQGLTAPADGPYHVQTLHEPIGVAGQIIPWNF 696
            +S+AA +A        +V   Q+ IN ++ D+ S KTFPT++P TG+VI  VAEG  EDV++AV AAR AF  G PW R  A +R +++ R ADL+ER    +AALET DNGKP+  S   ++ M  +  RYYAGWADK  G T P DG +   T HEP+GV GQIIPWNF
Sbjct:   19 LSAAATSAVPAPNHQPEVFCNQIFINNEWHDAVSRKTFPTVNPSTGEVICQVAEGNKEDVDKAVKAARAAFQLGSPWRRMDASDRGRLLYRLADLIERDRTYLAALETLDNGKPYVISYLVDLDMVLKCLRYYAGWADKYHGKTIPIDGDFFSYTRHEPVGVCGQIIPWNF 189          
The following BLAST results are available for this feature:
BLAST of FC930065 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 295
Match NameE-valueIdentityDescription
AL2B7_ARATH9.690e-8470.83Aldehyde dehydrogenase family 2 member B7, mitocho... [more]
AL2B4_ARATH3.226e-7967.59Aldehyde dehydrogenase family 2 member B4, mitocho... [more]
ALDH2_BOVIN2.580e-4453.14Aldehyde dehydrogenase, mitochondrial OS=Bos tauru... [more]
ALDH2_PIG9.803e-4451.43Aldehyde dehydrogenase, mitochondrial OS=Sus scrof... [more]
AL1B1_RAT2.184e-4352.00Aldehyde dehydrogenase X, mitochondrial OS=Rattus ... [more]
AL1B1_PONAB2.184e-4353.25Aldehyde dehydrogenase X, mitochondrial OS=Pongo a... [more]
AL1B1_MOUSE2.184e-4351.43Aldehyde dehydrogenase X, mitochondrial OS=Mus mus... [more]
AL1B1_HUMAN2.184e-4352.66Aldehyde dehydrogenase X, mitochondrial OS=Homo sa... [more]
ALDH2_HORSE7.025e-4251.76Aldehyde dehydrogenase, mitochondrial OS=Equus cab... [more]
ALDH2_MOUSE2.670e-4150.29Aldehyde dehydrogenase, mitochondrial OS=Mus muscu... [more]

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Properties
Property NameValue
Genbank descriptionC34003D08EF PostHarvC1 Citrus clementina cDNA clone C34003D08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930065 ID=FC930065; Name=FC930065; organism=Citrus clementina; type=EST; length=698bp
CACAAGAGAGGAGGAGAGGAAAAAAAAAAAAAGATAAAAATTAAAGTTGT
GATGGCTGCAAGAAGGATTCCGCTTTTGCTTTCACGTTCATTCACGTCTT
CTTCACCTACTCTGTTTTCAAGAGGGAGGGATTCTAGTTTGTGCAGAGCT
GCTGCTGCTGCTGCCGCCTCCTGCGGATACAGCACGGTTTCTTCTGCTGC
TGCTGCTGCTGAAGATCCAATTACTCCGCCTGTTAAAGTTGATTATACTC
AGCTTCTAATTAATGGACAATTTGTTGATTCTGCATCAGGCAAAACGTTT
CCCACATTAGACCCCAGGACTGGTGATGTGATTACTCATGTAGCTGAAGG
TGAGGCTGAAGACGTCAACCGAGCAGTTTCTGCTGCTCGCAAGGCATTTG
ATGAAGGACCGTGGCCTAGGAAGACTGCTTATGAAAGGTCAAAAATAATT
TTGCGCTTCGCTGATTTGCTGGAAAGGCATAATGATGAAATTGCAGCCCT
TGAGACTTGGGATAACGGGAAGCCATTCGAGCAGTCTGCCCAGACTGAAG
TACCAATGACCACGCGTTTATTCCGGTACTACGCTGGTTGGGCAGATAAG
ATTCAGGGTCTCACTGCTCCAGCTGATGGACCGTACCATGTGCAAACCTT
GCACGAACCAATTGGTGTAGCAGGTCAAATTATCCCATGGAACTTTCC
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