FC930069

Overview
NameFC930069
Unique NameFC930069
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length732
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930069 vs. ExPASy Swiss-Prot
Match: TCPE_ARATH (T-complex protein 1 subunit epsilon OS=Arabidopsis thaliana GN=At1g24510 PE=2 SV=1)

HSP 1 Score: 357.451 bits (916), Expect = 4.374e-98
Identity = 179/206 (86.89%), Postives = 199/206 (96.60%), Query Frame = 2
Query:  113 MALAFDEFGRPFILLRQQEEKSRLRGLDAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQKFEFGLNDLEPLVQTCMTTLNSKMVNRCKRRLAEIAVKAVLAVADLERKGCHLDLIK 730
            MALAFDEFGRPFI+LR+Q++K+RLRG+DAQKAN++AGKAVARILR+SLGPKGMDKMLQ PDGD+TITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAG+LLEQAE+ L+RGIHPIRIAEGYEMASR+AVEHLERIAQKFEF +N+ EPLVQTCMTTL+SK+VNRCKR LAEIAVKAVLAVADLER+  +LDLIK
Sbjct:    1 MALAFDEFGRPFIILREQDQKTRLRGIDAQKANIAAGKAVARILRSSLGPKGMDKMLQGPDGDITITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGALLEQAERQLDRGIHPIRIAEGYEMASRVAVEHLERIAQKFEFDVNNYEPLVQTCMTTLSSKIVNRCKRSLAEIAVKAVLAVADLERRDVNLDLIK 206          
BLAST of FC930069 vs. ExPASy Swiss-Prot
Match: TCPE2_AVESA (T-complex protein 1 subunit epsilon OS=Avena sativa PE=2 SV=1)

HSP 1 Score: 347.821 bits (891), Expect = 3.466e-95
Identity = 177/206 (85.92%), Postives = 195/206 (94.66%), Query Frame = 2
Query:  113 MALAFDEFGRPFILLRQQEEKSRLRGLDAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQKFEFGLNDLEPLVQTCMTTLNSKMVNRCKRRLAEIAVKAVLAVADLERKGCHLDLIK 730
            MAL FDE+ RPFI+LR+QE+KSRL+GLDAQKAN++AGK+VARILRTSLGPKGMDKMLQSPDGDVTITNDGATILE MDVDNQIAKLMVELSRSQDY+IGDGTTGVVVMAGSLLEQAEKLLERGIHPIR+AEGYEMASRIAV+HLE I+ K+EF   D+EPLVQTCMTTL+SK+V+RCKR LAEIAVKAVLAVADLERK  +LDLIK
Sbjct:    1 MALDFDEYWRPFIILREQEKKSRLQGLDAQKANIAAGKSVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILELMDVDNQIAKLMVELSRSQDYDIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRVAEGYEMASRIAVDHLESISTKYEFSATDIEPLVQTCMTTLSSKIVSRCKRALAEIAVKAVLAVADLERKDVNLDLIK 206          
BLAST of FC930069 vs. ExPASy Swiss-Prot
Match: TCPE1_AVESA (T-complex protein 1 subunit epsilon OS=Avena sativa PE=2 SV=1)

HSP 1 Score: 346.28 bits (887), Expect = 1.008e-94
Identity = 174/206 (84.47%), Postives = 195/206 (94.66%), Query Frame = 2
Query:  113 MALAFDEFGRPFILLRQQEEKSRLRGLDAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQKFEFGLNDLEPLVQTCMTTLNSKMVNRCKRRLAEIAVKAVLAVADLERKGCHLDLIK 730
            MALAFDE+GRPFI+LR+QE+KSRL+GLDA KAN++A KA+ARILRTSLGPKGMDKMLQSPDGDVTITNDGATILE MDVDNQIAKL+VELSRSQDY+IGDGTTGVVVMAG+LLEQAEKLLERGIHPIR+AEGYEMASRIAV+HLE I+ K+EF   D+EPLVQTCMTTL+SK+V+RCKR LAEI+VKAVLAVADLERK  +LDLIK
Sbjct:    1 MALAFDEYGRPFIILREQEKKSRLQGLDAHKANIAAAKAIARILRTSLGPKGMDKMLQSPDGDVTITNDGATILELMDVDNQIAKLLVELSRSQDYDIGDGTTGVVVMAGALLEQAEKLLERGIHPIRVAEGYEMASRIAVDHLESISTKYEFSATDIEPLVQTCMTTLSSKIVSRCKRALAEISVKAVLAVADLERKDVNLDLIK 206          
BLAST of FC930069 vs. ExPASy Swiss-Prot
Match: TCPE_MOUSE (T-complex protein 1 subunit epsilon OS=Mus musculus GN=Cct5 PE=1 SV=1)

HSP 1 Score: 275.018 bits (702), Expect = 2.855e-73
Identity = 134/204 (65.69%), Postives = 171/204 (83.82%), Query Frame = 2
Query:  119 LAFDEFGRPFILLRQQEEKSRLRGLDAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQKFEFGLNDLEPLVQTCMTTLNSKMVNRCKRRLAEIAVKAVLAVADLERKGCHLDLIK 730
            LAFDE+GRPF++++ Q+ KSRL GL+A K+++ A KAVA  +RTSLGP G+DKM+   DGDVTITNDGATIL  MDVD+QIAKLMVELS+SQD EIGDGTTGVVV+AG+LLE+AE+LL+RGIHPIRIA+GYE A+RIA++HL++I+ K    +N+ EPL+QT  TTL SK++N C R++AEIAV AVL VAD+ER+    +LIK
Sbjct:    7 LAFDEYGRPFLIIKDQDRKSRLMGLEALKSHIMAAKAVANTMRTSLGPNGLDKMMVDKDGDVTITNDGATILSMMDVDHQIAKLMVELSKSQDDEIGDGTTGVVVLAGALLEEAEQLLDRGIHPIRIADGYEQAARIAIQHLDKISDKVLVDINNPEPLIQTAKTTLGSKVINSCHRQMAEIAVNAVLTVADMERRDVDFELIK 210          
BLAST of FC930069 vs. ExPASy Swiss-Prot
Match: TCPE_PONAB (T-complex protein 1 subunit epsilon OS=Pongo abelii GN=CCT5 PE=2 SV=1)

HSP 1 Score: 274.248 bits (700), Expect = 4.870e-73
Identity = 133/204 (65.20%), Postives = 169/204 (82.84%), Query Frame = 2
Query:  119 LAFDEFGRPFILLRQQEEKSRLRGLDAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQKFEFGLNDLEPLVQTCMTTLNSKMVNRCKRRLAEIAVKAVLAVADLERKGCHLDLIK 730
            LAFDE+GRPF++++ Q+ KSRL GL+A K+++ A KAVA  +RTSLGP G+DKM+   DGDVT+TNDGATIL  MDVD+QIAKLMVELS+SQD EIGDGTTGVVV+AG+LLE+AE+LL+RGIHPIRIA+GYE A+R+A+EHL++I+      + D EPL+QT  TTL SK+VN C R++AEIAV AVL VAD+ER+    +LIK
Sbjct:    7 LAFDEYGRPFLIIKDQDRKSRLMGLEALKSHIMAAKAVANTMRTSLGPNGLDKMMVDKDGDVTVTNDGATILSMMDVDHQIAKLMVELSKSQDDEIGDGTTGVVVLAGALLEEAEQLLDRGIHPIRIADGYEQAARVAIEHLDKISDSVLVDIKDTEPLIQTAKTTLGSKVVNSCHRQMAEIAVNAVLTVADMERRDVDFELIK 210          
BLAST of FC930069 vs. ExPASy Swiss-Prot
Match: TCPE_MACFA (T-complex protein 1 subunit epsilon OS=Macaca fascicularis GN=CCT5 PE=2 SV=1)

HSP 1 Score: 274.248 bits (700), Expect = 4.870e-73
Identity = 133/204 (65.20%), Postives = 169/204 (82.84%), Query Frame = 2
Query:  119 LAFDEFGRPFILLRQQEEKSRLRGLDAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQKFEFGLNDLEPLVQTCMTTLNSKMVNRCKRRLAEIAVKAVLAVADLERKGCHLDLIK 730
            LAFDE+GRPF++++ Q+ KSRL GL+A K+++ A KAVA  +RTSLGP G+DKM+   DGDVT+TNDGATIL  MDVD+QIAKLMVELS+SQD EIGDGTTGVVV+AG+LLE+AE+LL+RGIHPIRIA+GYE A+R+A+EHL++I+      + D EPL+QT  TTL SK+VN C R++AEIAV AVL VAD+ER+    +LIK
Sbjct:    7 LAFDEYGRPFLIIKDQDRKSRLMGLEALKSHIMAAKAVANTMRTSLGPNGLDKMMVDKDGDVTVTNDGATILSMMDVDHQIAKLMVELSKSQDDEIGDGTTGVVVLAGALLEEAEQLLDRGIHPIRIADGYEQAARVAIEHLDKISDSVLVDIKDTEPLIQTAKTTLGSKVVNSCHRQMAEIAVNAVLTVADMERRDVDFELIK 210          
BLAST of FC930069 vs. ExPASy Swiss-Prot
Match: TCPE_HUMAN (T-complex protein 1 subunit epsilon OS=Homo sapiens GN=CCT5 PE=1 SV=1)

HSP 1 Score: 274.248 bits (700), Expect = 4.870e-73
Identity = 133/204 (65.20%), Postives = 169/204 (82.84%), Query Frame = 2
Query:  119 LAFDEFGRPFILLRQQEEKSRLRGLDAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQKFEFGLNDLEPLVQTCMTTLNSKMVNRCKRRLAEIAVKAVLAVADLERKGCHLDLIK 730
            LAFDE+GRPF++++ Q+ KSRL GL+A K+++ A KAVA  +RTSLGP G+DKM+   DGDVT+TNDGATIL  MDVD+QIAKLMVELS+SQD EIGDGTTGVVV+AG+LLE+AE+LL+RGIHPIRIA+GYE A+R+A+EHL++I+      + D EPL+QT  TTL SK+VN C R++AEIAV AVL VAD+ER+    +LIK
Sbjct:    7 LAFDEYGRPFLIIKDQDRKSRLMGLEALKSHIMAAKAVANTMRTSLGPNGLDKMMVDKDGDVTVTNDGATILSMMDVDHQIAKLMVELSKSQDDEIGDGTTGVVVLAGALLEEAEQLLDRGIHPIRIADGYEQAARVAIEHLDKISDSVLVDIKDTEPLIQTAKTTLGSKVVNSCHRQMAEIAVNAVLTVADMERRDVDFELIK 210          
BLAST of FC930069 vs. ExPASy Swiss-Prot
Match: TCPE_RAT (T-complex protein 1 subunit epsilon OS=Rattus norvegicus GN=Cct5 PE=1 SV=1)

HSP 1 Score: 273.092 bits (697), Expect = 1.085e-72
Identity = 133/204 (65.20%), Postives = 170/204 (83.33%), Query Frame = 2
Query:  119 LAFDEFGRPFILLRQQEEKSRLRGLDAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQKFEFGLNDLEPLVQTCMTTLNSKMVNRCKRRLAEIAVKAVLAVADLERKGCHLDLIK 730
            LAFDE+GRPF++++ Q+ KSRL GL+A K+++ A KAVA  +RTSLGP G+DKM+   DGDVT+TNDGATIL  MDVD+QIAKLMVELS+SQD EIGDGTTGVVV+AG+LLE+AE+LL+RGIHPIRIA+GYE A+RIA++HL++I+      +N+ EPL+QT  TTL SK+VN C R++AEIAV AVL VAD+ER+    +LIK
Sbjct:    7 LAFDEYGRPFLIIKDQDRKSRLMGLEALKSHIMAAKAVANTMRTSLGPNGLDKMMVDKDGDVTVTNDGATILSMMDVDHQIAKLMVELSKSQDDEIGDGTTGVVVLAGALLEEAEQLLDRGIHPIRIADGYEQAARIAIQHLDKISDNVLVDINNPEPLIQTAKTTLGSKVVNSCHRQMAEIAVNAVLTVADMERRDVDFELIK 210          
BLAST of FC930069 vs. ExPASy Swiss-Prot
Match: TCPE_DICDI (T-complex protein 1 subunit epsilon OS=Dictyostelium discoideum GN=cct5 PE=3 SV=1)

HSP 1 Score: 267.7 bits (683), Expect = 4.558e-71
Identity = 130/206 (63.11%), Postives = 171/206 (83.01%), Query Frame = 2
Query:  113 MALAFDEFGRPFILLRQQEEKSRLRGLDAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQKFEFGLNDLEPLVQTCMTTLNSKMVNRCKRRLAEIAVKAVLAVADLERKGCHLDLIK 730
            M+L FDE+G PFI++R Q+ K RLRG++A ++++ A K ++ I+++SLGPKGMDKM+ S DG+V +TNDGATILE M VDNQIAKLMV+LS+SQD EIGDGTTGVVV+AGSLLEQAE+L+E+GIHP RI EGYE A +IA EHL+ I+   EF  +++EPL++T MT L SK+VNR  R+++EIAVKAV++VADLERK  +L+ IK
Sbjct:    1 MSLVFDEYGNPFIVIRDQQAKERLRGIEAHRSHILAAKTISNIMKSSLGPKGMDKMMVSQDGEVLVTNDGATILENMQVDNQIAKLMVQLSKSQDDEIGDGTTGVVVLAGSLLEQAEQLIEKGIHPCRIYEGYETACKIATEHLKTISDSIEFSKDNIEPLIKTAMTCLGSKIVNRFHRQMSEIAVKAVISVADLERKDVNLENIK 206          
BLAST of FC930069 vs. ExPASy Swiss-Prot
Match: TCPE_CAEEL (T-complex protein 1 subunit epsilon OS=Caenorhabditis elegans GN=cct-5 PE=1 SV=1)

HSP 1 Score: 248.825 bits (634), Expect = 2.191e-65
Identity = 124/204 (60.78%), Postives = 169/204 (82.84%), Query Frame = 2
Query:  119 LAFDEFGRPFILLRQQEEKSRLRGLDAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQKFEFGLNDLEPLVQTCMTTLNSKMVNRCKRRLAEIAVKAVLAVADLERKGCHLDLIK 730
            L FDE G+PFI++R+QE + R+ G++A K+++ A +AVA  LRTSLGP+G+DKML SPDGDVTITNDGATI+E+MDV + +AKLMVELS+SQD+EIGDGTTGVVV+AG+LLE+AEKL++RGIHPI+IA+G+++A + A+E L+ I+ KF   + + E LV+T  T+L SK+VNR  R+ AEIAV AVL+VAD+E K  + ++IK
Sbjct:    8 LLFDESGQPFIVMREQENQKRITGVEAVKSHILAARAVANTLRTSLGPRGLDKMLVSPDGDVTITNDGATIMEKMDVQHHVAKLMVELSKSQDHEIGDGTTGVVVLAGALLEEAEKLIDRGIHPIKIADGFDLACKKALETLDSISDKFP--VENRERLVETAQTSLGSKIVNRSLRQFAEIAVDAVLSVADIESKDVNFEMIK 209          
The following BLAST results are available for this feature:
BLAST of FC930069 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 440
Match NameE-valueIdentityDescription
TCPE_ARATH4.374e-9886.89T-complex protein 1 subunit epsilon OS=Arabidopsis... [more]
TCPE2_AVESA3.466e-9585.92T-complex protein 1 subunit epsilon OS=Avena sativ... [more]
TCPE1_AVESA1.008e-9484.47T-complex protein 1 subunit epsilon OS=Avena sativ... [more]
TCPE_MOUSE2.855e-7365.69T-complex protein 1 subunit epsilon OS=Mus musculu... [more]
TCPE_PONAB4.870e-7365.20T-complex protein 1 subunit epsilon OS=Pongo abeli... [more]
TCPE_MACFA4.870e-7365.20T-complex protein 1 subunit epsilon OS=Macaca fasc... [more]
TCPE_HUMAN4.870e-7365.20T-complex protein 1 subunit epsilon OS=Homo sapien... [more]
TCPE_RAT1.085e-7265.20T-complex protein 1 subunit epsilon OS=Rattus norv... [more]
TCPE_DICDI4.558e-7163.11T-complex protein 1 subunit epsilon OS=Dictyosteli... [more]
TCPE_CAEEL2.191e-6560.78T-complex protein 1 subunit epsilon OS=Caenorhabdi... [more]

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Properties
Property NameValue
Genbank descriptionC34003D12EF PostHarvC1 Citrus clementina cDNA clone C34003D12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930069 ID=FC930069; Name=FC930069; organism=Citrus clementina; type=EST; length=732bp
CTGTTCATTGTTCACTAAGCGACAAAAGCACTGAAAGTTCTACACTCTTC
TTGTGAAGAGAAGTGGAAGGGGGAGAGGAAGCAGCAGCTGTGAGAATCAA
GGATAGGAGAAAATGGCGTTAGCGTTCGACGAGTTCGGTCGACCGTTCAT
ATTATTAAGGCAGCAAGAAGAGAAGTCCAGATTGCGCGGACTCGATGCTC
AGAAAGCCAACGTTTCGGCCGGCAAAGCAGTGGCTCGGATCCTCCGAACC
TCCCTCGGACCCAAAGGCATGGACAAGATGCTCCAAAGCCCCGACGGTGA
CGTCACCATTACAAATGATGGTGCCACAATCCTGGAGCAGATGGATGTTG
ACAATCAAATTGCAAAGCTGATGGTTGAATTGTCTCGGAGTCAGGACTAT
GAAATTGGTGATGGTACAACTGGCGTTGTTGTTATGGCTGGTTCACTTTT
AGAGCAAGCTGAGAAGCTTTTGGAACGGGGAATTCATCCTATTCGGATTG
CAGAGGGCTATGAAATGGCTTCTAGAATAGCTGTTGAACATTTAGAACGT
ATAGCTCAGAAGTTTGAGTTCGGGTTGAATGACTTGGAGCCTTTGGTTCA
AACTTGCATGACTACTTTAAATTCGAAAATGGTGAATCGTTGCAAGCGCA
GATTGGCTGAGATTGCTGTCAAAGCAGTTCTTGCTGTGGCAGACTTAGAG
AGGAAGGGATGTCATTTAGATTTGATTAAGNT
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