FC930072

Overview
NameFC930072
Unique NameFC930072
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length668
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig1870 contig Ccv1_Contig1870:204..873. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC930072 vs. ExPASy Swiss-Prot
Match: IVD_ARATH (Isovaleryl-CoA dehydrogenase, mitochondrial OS=Arabidopsis thaliana GN=IVD PE=1 SV=2)

HSP 1 Score: 239.965 bits (611), Expect = 6.874e-100
Identity = 115/143 (80.42%), Postives = 124/143 (86.71%), Query Frame = 3
Query:   27 QDVNLWKLMGNFNLHGITAPQEXXXXXXXXXXHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTTLKLAQK 455
            +DVNLWKLMG FNLHGITAP+E          HCIAMEEISRASGSV LSYGAHSNLCINQLVR+G+ AQK+KYLPKLISGEHVGALAMSEPNAGSDVVGMKCKA++VDGGYI+NGNKMWCTNGP A+TLVVYAKT  K   K
Sbjct:   65 KDVNLWKLMGEFNLHGITAPEEYGGLGLGYLYHCIAMEEISRASGSVALSYGAHSNLCINQLVRNGTAAQKEKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKAEKVDGGYILNGNKMWCTNGPSAETLVVYAKTDTKAGSK 207          

HSP 2 Score: 145.976 bits (367), Expect = 6.874e-100
Identity = 71/80 (88.75%), Postives = 75/80 (93.75%), Query Frame = 2
Query:  428 KNNIKAGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGVYVMMSGLDLERLVLAAGP 667
            K + KAGSKGITAFIIEKGM GFSTAQKLDKLGMRGSDTCELVFENCFVP EN+L +EGKGVYV+MSGLDLERLVLAAGP
Sbjct:  199 KTDTKAGSKGITAFIIEKGMTGFSTAQKLDKLGMRGSDTCELVFENCFVPEENILDKEGKGVYVLMSGLDLERLVLAAGP 278          
BLAST of FC930072 vs. ExPASy Swiss-Prot
Match: IVD2_SOLTU (Isovaleryl-CoA dehydrogenase 2, mitochondrial (Fragment) OS=Solanum tuberosum GN=IVD2 PE=1 SV=1)

HSP 1 Score: 231.491 bits (589), Expect = 1.177e-96
Identity = 111/143 (77.62%), Postives = 122/143 (85.31%), Query Frame = 3
Query:   27 QDVNLWKLMGNFNLHGITAPQEXXXXXXXXXXHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTTLKLAQK 455
            QDVNLWKLMG+FNL GIT P+E          HCIAMEEISRASGSVGLSYGAH+NLCINQLVR+G+  QK KYLPKLISGEHVGALAMSEP+AGSDVV MKCKADRV+GGY++NGNKMWCTNGP AQTLVVYAKT +  + K
Sbjct:   57 QDVNLWKLMGDFNLLGITVPEEYGGLGLGYLYHCIAMEEISRASGSVGLSYGAHTNLCINQLVRNGTHEQKQKYLPKLISGEHVGALAMSEPDAGSDVVSMKCKADRVEGGYVLNGNKMWCTNGPTAQTLVVYAKTDVTASSK 199          

HSP 2 Score: 143.665 bits (361), Expect = 1.177e-96
Identity = 70/80 (87.50%), Postives = 74/80 (92.50%), Query Frame = 2
Query:  428 KNNIKAGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGVYVMMSGLDLERLVLAAGP 667
            K ++ A SKGITAFIIEKGM GFSTAQKLDKLGMRGSDTCELVFENCFVP ENVLGQ GKGVYV+MSGLDLERLVLA+GP
Sbjct:  191 KTDVTASSKGITAFIIEKGMTGFSTAQKLDKLGMRGSDTCELVFENCFVPEENVLGQVGKGVYVLMSGLDLERLVLASGP 270          
BLAST of FC930072 vs. ExPASy Swiss-Prot
Match: IVD_PONAB (Isovaleryl-CoA dehydrogenase, mitochondrial OS=Pongo abelii GN=IVD PE=2 SV=1)

HSP 1 Score: 182.956 bits (463), Expect = 1.862e-76
Identity = 89/133 (66.92%), Postives = 103/133 (77.44%), Query Frame = 3
Query:   42 WKLMGNFNLHGITAPQEXXXXXXXXXXHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTTL 440
            WK +GN  + GITAP +          H + MEEISRASG+VGLSYGAHSNLCINQLVR+G+ AQK+KYLPKLISGE++GALAMSEPNAGSDVV MK KA++    YI+NGNK W TNGP A  L+VYAKT L
Sbjct:   81 WKQLGNLGVLGITAPVQYGGSGLGYLEHVLVMEEISRASGAVGLSYGAHSNLCINQLVRNGNEAQKEKYLPKLISGEYIGALAMSEPNAGSDVVSMKLKAEKKGNHYILNGNKFWITNGPDADVLIVYAKTDL 213          

HSP 2 Score: 124.79 bits (312), Expect = 1.862e-76
Identity = 58/73 (79.45%), Postives = 67/73 (91.78%), Query Frame = 2
Query:  449 SKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGVYVMMSGLDLERLVLAAGP 667
            S+GITAFI+EKGMPGFST++KLDKLGMRGS+TCEL+FE+C VP  N+LG E KGVYV+MSGLDLERLVLA GP
Sbjct:  219 SRGITAFIVEKGMPGFSTSKKLDKLGMRGSNTCELIFEDCKVPAANILGHENKGVYVLMSGLDLERLVLAGGP 291          
BLAST of FC930072 vs. ExPASy Swiss-Prot
Match: IVD_HUMAN (Isovaleryl-CoA dehydrogenase, mitochondrial OS=Homo sapiens GN=IVD PE=1 SV=1)

HSP 1 Score: 182.956 bits (463), Expect = 2.428e-76
Identity = 89/133 (66.92%), Postives = 103/133 (77.44%), Query Frame = 3
Query:   42 WKLMGNFNLHGITAPQEXXXXXXXXXXHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTTL 440
            WK +GN  + GITAP +          H + MEEISRASG+VGLSYGAHSNLCINQLVR+G+ AQK+KYLPKLISGE++GALAMSEPNAGSDVV MK KA++    YI+NGNK W TNGP A  L+VYAKT L
Sbjct:   81 WKQLGNLGVLGITAPVQYGGSGLGYLEHVLVMEEISRASGAVGLSYGAHSNLCINQLVRNGNEAQKEKYLPKLISGEYIGALAMSEPNAGSDVVSMKLKAEKKGNHYILNGNKFWITNGPDADVLIVYAKTDL 213          

HSP 2 Score: 124.405 bits (311), Expect = 2.428e-76
Identity = 57/73 (78.08%), Postives = 67/73 (91.78%), Query Frame = 2
Query:  449 SKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGVYVMMSGLDLERLVLAAGP 667
            S+GITAFI+EKGMPGFST++KLDKLGMRGS+TCEL+FE+C +P  N+LG E KGVYV+MSGLDLERLVLA GP
Sbjct:  219 SRGITAFIVEKGMPGFSTSKKLDKLGMRGSNTCELIFEDCKIPAANILGHENKGVYVLMSGLDLERLVLAGGP 291          
BLAST of FC930072 vs. ExPASy Swiss-Prot
Match: IVD_MOUSE (Isovaleryl-CoA dehydrogenase, mitochondrial OS=Mus musculus GN=Ivd PE=1 SV=1)

HSP 1 Score: 177.948 bits (450), Expect = 4.511e-75
Identity = 86/133 (64.66%), Postives = 102/133 (76.69%), Query Frame = 3
Query:   42 WKLMGNFNLHGITAPQEXXXXXXXXXXHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTTL 440
            WK +G+  + GITAP +          H + MEEISRASG+VGLSYGAHSNLC+NQ+VR+G+ AQK+KYLPKLISGE +GALAMSEPNAGSDVV MK KA++    Y++NGNK W TNGP A  LVVYAKT L
Sbjct:   82 WKQLGSLGVLGITAPVQYGGSGLGYLEHVLVMEEISRASGAVGLSYGAHSNLCVNQIVRNGNEAQKEKYLPKLISGEFIGALAMSEPNAGSDVVSMKLKAEKKGDHYVLNGNKFWITNGPDADILVVYAKTDL 214          

HSP 2 Score: 125.176 bits (313), Expect = 4.511e-75
Identity = 60/73 (82.19%), Postives = 67/73 (91.78%), Query Frame = 2
Query:  449 SKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGVYVMMSGLDLERLVLAAGP 667
            S+GITAFI+EKGMPGFST++KLDKLGMRGS+TCELVFE+C VP  NVL QE KGVYV+MSGLDLERLVLA GP
Sbjct:  220 SRGITAFIVEKGMPGFSTSKKLDKLGMRGSNTCELVFEDCKVPAANVLSQESKGVYVLMSGLDLERLVLAGGP 292          
BLAST of FC930072 vs. ExPASy Swiss-Prot
Match: IVD_BOVIN (Isovaleryl-CoA dehydrogenase, mitochondrial OS=Bos taurus GN=IVD PE=2 SV=1)

HSP 1 Score: 174.866 bits (442), Expect = 6.423e-74
Identity = 84/131 (64.12%), Postives = 100/131 (76.34%), Query Frame = 3
Query:   42 WKLMGNFNLHGITAPQEXXXXXXXXXXHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKT 434
            WK +GN  + GITAP +          + + MEEISR SG+VGLSYGAHSNLCINQ+VR+G+  QK+KYLPKLISGE++GALAMSEPNAGSDVV MK KA++    Y++NGNK W TNGP A  LVVYAKT
Sbjct:   84 WKQLGNLGVLGITAPVQYGGSGLGFLENVLVMEEISRVSGAVGLSYGAHSNLCINQIVRNGNETQKEKYLPKLISGEYIGALAMSEPNAGSDVVSMKLKAEKKGDHYVLNGNKFWITNGPDADVLVVYAKT 214          

HSP 2 Score: 124.405 bits (311), Expect = 6.423e-74
Identity = 59/73 (80.82%), Postives = 67/73 (91.78%), Query Frame = 2
Query:  449 SKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGVYVMMSGLDLERLVLAAGP 667
            S+GITAFI+EKGMPGFST++KLDKLGMRGS+TCELVFE+C VP  N+LG  GKGVYV+MSGLDLERLVLA GP
Sbjct:  222 SRGITAFIVEKGMPGFSTSKKLDKLGMRGSNTCELVFEDCEVPAANILGHLGKGVYVLMSGLDLERLVLAGGP 294          
BLAST of FC930072 vs. ExPASy Swiss-Prot
Match: IVD_RAT (Isovaleryl-CoA dehydrogenase, mitochondrial OS=Rattus norvegicus GN=Ivd PE=1 SV=2)

HSP 1 Score: 175.252 bits (443), Expect = 2.424e-73
Identity = 85/133 (63.91%), Postives = 101/133 (75.94%), Query Frame = 3
Query:   42 WKLMGNFNLHGITAPQEXXXXXXXXXXHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTTL 440
            WK +G+  + GITAP +          H + MEEISRAS +VGLSYGAHSNLCINQ+VR+G+ AQK+KYLPKLISGE +GALAMSEPNAGSDVV M+ KA++    Y++NGNK W TNGP A  LVVYAKT L
Sbjct:   82 WKQLGSLGVLGITAPVQYGGSGLGYLEHVLVMEEISRASAAVGLSYGAHSNLCINQIVRNGNEAQKEKYLPKLISGEFIGALAMSEPNAGSDVVSMRLKAEKKGDHYVLNGNKFWITNGPDADVLVVYAKTDL 214          

HSP 2 Score: 122.094 bits (305), Expect = 2.424e-73
Identity = 58/73 (79.45%), Postives = 66/73 (90.41%), Query Frame = 2
Query:  449 SKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGVYVMMSGLDLERLVLAAGP 667
            S+GITAFI+EK MPGFST++KLDKLGMRGS+TCELVFE+C VP  N+L QE KGVYV+MSGLDLERLVLA GP
Sbjct:  220 SRGITAFIVEKDMPGFSTSKKLDKLGMRGSNTCELVFEDCKVPAANILSQESKGVYVLMSGLDLERLVLAGGP 292          
BLAST of FC930072 vs. ExPASy Swiss-Prot
Match: IVD1_SOLTU (Isovaleryl-CoA dehydrogenase 1, mitochondrial OS=Solanum tuberosum GN=IVD1 PE=2 SV=1)

HSP 1 Score: 226.483 bits (576), Expect = 9.882e-59
Identity = 106/155 (68.39%), Postives = 123/155 (79.35%), Query Frame = 3
Query:   27 QDVNLWKLMGNFNLHGITAPQEXXXXXXXXXXHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTTLKLAQKESQHLS*RKECP 491
            +++NLWKLMG+FNLHGITAP+E          HCIA+EEISRASG+V +SYG  SN+CINQLVR+G+P QK KYLPKLISG+H+GALAMSEPNAGSDVV MKC+ADRVDGGY++NGNKMWCTNGPVA TL+VYAKT      K        KE P
Sbjct:   68 KEINLWKLMGDFNLHGITAPEEYGGLNLGYLYHCIALEEISRASGAVAVSYGVQSNVCINQLVRNGTPDQKQKYLPKLISGDHIGALAMSEPNAGSDVVSMKCRADRVDGGYVLNGNKMWCTNGPVANTLIVYAKTDTTAGSKGITAFIIEKEMP 222          

HSP 2 Score: 148.288 bits (373), Expect = 3.420e-35
Identity = 73/80 (91.25%), Postives = 75/80 (93.75%), Query Frame = 2
Query:  428 KNNIKAGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGVYVMMSGLDLERLVLAAGP 667
            K +  AGSKGITAFIIEK MPGFSTAQKLDKLGMRGSDTCELVFENCFVP ENVLGQEGKGVYV+MSGLDLERLVLAAGP
Sbjct:  202 KTDTTAGSKGITAFIIEKEMPGFSTAQKLDKLGMRGSDTCELVFENCFVPKENVLGQEGKGVYVLMSGLDLERLVLAAGP 281          
BLAST of FC930072 vs. ExPASy Swiss-Prot
Match: ACDS_CLOAB (Acyl-CoA dehydrogenase, short-chain specific OS=Clostridium acetobutylicum GN=bcd PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 2.657e-37
Identity = 50/130 (38.46%), Postives = 75/130 (57.69%), Query Frame = 3
Query:   45 KLMGNFNLHGITAPQEXXXXXXXXXXHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKT 434
            K MG + + GI   +E          + IA+EE+S+  G+ G+   AH++LC + +  HG+  QK KYL  L  GE +GA  ++EPNAG+D    +  A      Y+ING+K++ TNG VA T V++A T
Sbjct:   43 KKMGQYGMMGIPFSKEYGGAGGDVLSYIIAVEELSKVCGTTGVILSAHTSLCASLINEHGTEEQKQKYLVPLAKGEKIGAYGLTEPNAGTDSGAQQTVAVLEGDHYVINGSKIFITNGGVADTFVIFAMT 172          

HSP 2 Score: 77.7962 bits (190), Expect = 2.657e-37
Identity = 40/72 (55.56%), Postives = 51/72 (70.83%), Query Frame = 2
Query:  446 GSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGVYVMMSGLDLERLVLAA 661
            G+KGI+AFIIEKG  GFS  +   KLG+R S T ELVFE+  VP EN++G+EGKG  + M  LD  R+ +AA
Sbjct:  177 GTKGISAFIIEKGFKGFSIGKVEQKLGIRASSTTELVFEDMIVPVENMIGKEGKGFPIAMKTLDGGRIGIAA 248          
BLAST of FC930072 vs. ExPASy Swiss-Prot
Match: ACDB_BACSU (Acyl-CoA dehydrogenase OS=Bacillus subtilis GN=mmgC PE=2 SV=3)

HSP 1 Score: 98.9821 bits (245), Expect = 7.653e-37
Identity = 48/132 (36.36%), Postives = 79/132 (59.85%), Query Frame = 3
Query:   39 LWKLMGNFNLHGITAPQEXXXXXXXXXXHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKT 434
            L K MG   L GI  P++          + +A+ EISR S +VG+    H+++  N ++  G+  QK KY+P L SG+H+GA A++EP++GSD   ++  A + +G Y++NG+K++ TNG  A   + +A T
Sbjct:   39 LIKKMGKHGLMGIPVPEQYGGAGADVVSYILAIHEISRISAAVGVILSVHTSVGTNPILYFGNEEQKMKYIPNLASGDHLGAFALTEPHSGSDAGSLRTTAIKKNGKYLLNGSKIFITNGGAADIYITFALT 170          

HSP 2 Score: 76.2554 bits (186), Expect = 7.653e-37
Identity = 35/72 (48.61%), Postives = 52/72 (72.22%), Query Frame = 2
Query:  446 GSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGVYVMMSGLDLERLVLAA 661
            G  GI+AFI+EK  PGF+  +K  KLG+ GS+T EL+F+N  VP  N+LG+EG G ++ M+ L++ R+ +AA
Sbjct:  175 GRHGISAFIVEKNTPGFTVGKKERKLGLYGSNTTELIFDNAEVPEANLLGKEGDGFHIAMANLNVGRIGIAA 246          
The following BLAST results are available for this feature:
BLAST of FC930072 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 64
Match NameE-valueIdentityDescription
IVD_ARATH6.874e-10080.42Isovaleryl-CoA dehydrogenase, mitochondrial OS=Ara... [more]
IVD2_SOLTU1.177e-9677.62Isovaleryl-CoA dehydrogenase 2, mitochondrial (Fra... [more]
IVD_PONAB1.862e-7666.92Isovaleryl-CoA dehydrogenase, mitochondrial OS=Pon... [more]
IVD_HUMAN2.428e-7666.92Isovaleryl-CoA dehydrogenase, mitochondrial OS=Hom... [more]
IVD_MOUSE4.511e-7564.66Isovaleryl-CoA dehydrogenase, mitochondrial OS=Mus... [more]
IVD_BOVIN6.423e-7464.12Isovaleryl-CoA dehydrogenase, mitochondrial OS=Bos... [more]
IVD_RAT2.424e-7363.91Isovaleryl-CoA dehydrogenase, mitochondrial OS=Rat... [more]
IVD1_SOLTU9.882e-5968.39Isovaleryl-CoA dehydrogenase 1, mitochondrial OS=S... [more]
ACDS_CLOAB2.657e-3738.46Acyl-CoA dehydrogenase, short-chain specific OS=Cl... [more]
ACDB_BACSU7.653e-3736.36Acyl-CoA dehydrogenase OS=Bacillus subtilis GN=mmg... [more]

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Properties
Property NameValue
Genbank descriptionC34003E03EF PostHarvC1 Citrus clementina cDNA clone C34003E03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930072 ID=FC930072; Name=FC930072; organism=Citrus clementina; type=EST; length=668bp
TGTGATTTTGGTTGTCCCTCTTGCTACAGGATGTTAATTTATGGAAACTC
ATGGGAAATTTCAATCTCCATGGAATAACAGCTCCACAGGAATACGGAGG
GCTTGGACTTGGTTACTTGTATCATTGCATAGCAATGGAAGAAATTAGCC
GTGCGTCGGGGTCTGTTGGTCTCTCTTACGGTGCCCATTCTAATTTGTGC
ATCAATCAATTGGTGAGACATGGAAGCCCTGCTCAGAAAGACAAGTACTT
GCCCAAGCTCATTAGCGGAGAACATGTAGGTGCTCTTGCCATGAGTGAAC
CCAACGCTGGCTCTGATGTTGTTGGCATGAAATGCAAAGCTGATCGCGTA
GATGGGGGTTATATTATAAATGGGAACAAGATGTGGTGCACCAATGGTCC
AGTTGCTCAGACGTTGGTTGTTTACGCAAAAACAACATTAAAGCTGGCTC
AAAAGGAATCACAGCATTTATCATAGAGAAAGGAATGCCCGGATTCAGCA
CTGCCCAGAAGTTAGACAAGCTCGGGATGAGAGGAAGTGATACATGTGAG
CTTGTATTTGAGAATTGCTTTGTTCCAAATGAGAATGTTCTTGGGCAGGA
AGGAAAAGGAGTTTATGTTATGATGTCAGGGCTAGATTTGGAGAGGCTTG
TTTTGGCAGCTGGGCCCC
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