FC930073

Overview
NameFC930073
Unique NameFC930073
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length697
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14215 contig Ccv1_Contig14215:96..793. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC930073 vs. ExPASy Swiss-Prot
Match: GOX1_ARATH (Probable peroxisomal (S)-2-hydroxy-acid oxidase 1 OS=Arabidopsis thaliana GN=At3g14415 PE=1 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 8.611e-52
Identity = 71/135 (52.59%), Postives = 104/135 (77.04%), Query Frame = 2
Query:   80 EPVNLNEFQELARLALPKMYYDFYAGGAEDEHTLKENVEAFHRITFRPRILVDVSRIDLSTTILDYKISAPIIIAPTAFHRLANPEGEVATARAAASCNTIMVLSFTSSSTIEEVAASSNAVRFYH-YMYSRNEI 481
            E  N+ E+  +A+  LPKM YD+YA GAED+ TL+EN  AF RI FRPRIL+DV++ID++TT+L +KIS PI++APTAF ++A+P+GE ATARAA++  TIM LS  ++S++EEVA++   +RF+  Y+Y   ++
Sbjct:    2 EITNVTEYDAIAKAKLPKMVYDYYASGAEDQWTLQENRNAFARILFRPRILIDVNKIDMATTVLGFKISMPIMVAPTAFQKMAHPDGEYATARAASAAGTIMTLSSWATSSVEEVASTGPGIRFFQLYVYKNRKV 136          

HSP 2 Score: 73.559 bits (179), Expect = 8.611e-52
Identity = 36/58 (62.07%), Postives = 43/58 (74.14%), Query Frame = 1
Query:  460 YVFKKRDITATLVQRAERNGFKALVLTADTPRLGRREADIKNKMITPP---LKNLEGL 624
            YV+K R +   LV+RAE+ GFKA+ LT DTPRLGRRE+DIKN+   PP   LKN EGL
Sbjct:  129 YVYKNRKVVEQLVRRAEKAGFKAIALTVDTPRLGRRESDIKNRFTLPPNLTLKNFEGL 186          
BLAST of FC930073 vs. ExPASy Swiss-Prot
Match: GOX_SPIOL (Peroxisomal (S)-2-hydroxy-acid oxidase OS=Spinacia oleracea PE=1 SV=1)

HSP 1 Score: 153.68 bits (387), Expect = 8.887e-37
Identity = 78/140 (55.71%), Postives = 107/140 (76.43%), Query Frame = 2
Query:   80 EPVNLNEFQELARLALPKMYYDFYAGGAEDEHTLKENVEAFHRITFRPRILVDVSRIDLSTTILDYKISAPIIIAPTAFHRLANPEGEVATARAAASCNTIMVLSFTSSSTIEEVAASSNAVRFYH-YMY-SRNEI*QLL 493
            E  N+NE++ +A+  LPKM YD+YA GAED+ TL EN  AF RI FRPRIL+DV+ ID++TTIL +KIS PI+IAPTA  ++A+PEGE ATARAA++  TIM LS  ++S++EEVA++   +RF+  Y+Y  RN + QL+
Sbjct:    2 EITNVNEYEAIAKQKLPKMVYDYYASGAEDQWTLAENRNAFSRILFRPRILIDVTNIDMTTTILGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWATSSVEEVASTGPGIRFFQLYVYKDRNVVAQLV 141          

HSP 2 Score: 80.1073 bits (196), Expect = 1.249e-14
Identity = 42/82 (51.22%), Postives = 53/82 (64.63%), Query Frame = 1
Query:  460 YVFKKRDITATLVQRAERNGFKALVLTADTPRLGRREADIKNKMITPP---LKNLEGLLSTKVSSDTGSNFEADAXETMDAS 696
            YV+K R++ A LV+RAER GFKA+ LT DTPRLGRREADIKN+ + PP   LKN EG+   K+     S   +     +D S
Sbjct:  129 YVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPFLTLKNFEGIDLGKMDKANDSGLSSYVAGQIDRS 210          
BLAST of FC930073 vs. ExPASy Swiss-Prot
Match: GOX2_ARATH (Probable peroxisomal (S)-2-hydroxy-acid oxidase 2 OS=Arabidopsis thaliana GN=At3g14420 PE=1 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 4.411e-36
Identity = 75/140 (53.57%), Postives = 108/140 (77.14%), Query Frame = 2
Query:   80 EPVNLNEFQELARLALPKMYYDFYAGGAEDEHTLKENVEAFHRITFRPRILVDVSRIDLSTTILDYKISAPIIIAPTAFHRLANPEGEVATARAAASCNTIMVLSFTSSSTIEEVAASSNAVRFYH-YMY-SRNEI*QLL 493
            E  N+ E+  +A+  LPKM YD+YA GAED+ TL+EN  AF RI FRPRIL+DVS+ID++TT+L +KIS PI++APTA  ++A+P+GE ATARAA++  TIM LS  ++S++EEVA++   +RF+  Y+Y +RN + QL+
Sbjct:    2 EITNVTEYDAIAKQKLPKMVYDYYASGAEDQWTLQENRNAFARILFRPRILIDVSKIDMTTTVLGFKISMPIMVAPTAMQKMAHPDGEYATARAASAAGTIMTLSSWATSSVEEVASTGPGIRFFQLYVYKNRNVVEQLV 141          

HSP 2 Score: 75.485 bits (184), Expect = 3.076e-13
Identity = 37/58 (63.79%), Postives = 44/58 (75.86%), Query Frame = 1
Query:  460 YVFKKRDITATLVQRAERNGFKALVLTADTPRLGRREADIKNKMITPP---LKNLEGL 624
            YV+K R++   LV+RAER GFKA+ LT DTPRLGRRE+DIKN+   PP   LKN EGL
Sbjct:  129 YVYKNRNVVEQLVRRAERAGFKAIALTVDTPRLGRRESDIKNRFTLPPNLTLKNFEGL 186          
BLAST of FC930073 vs. ExPASy Swiss-Prot
Match: HAOX1_HUMAN (Hydroxyacid oxidase 1 OS=Homo sapiens GN=HAO1 PE=1 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 2.569e-34
Identity = 57/132 (43.18%), Postives = 86/132 (65.15%), Query Frame = 2
Query:   92 LNEFQELARLALPKMYYDFYAGGAEDEHTLKENVEAFHRITFRPRILVDVSRIDLSTTILDYKISAPIIIAPTAFHRLANPEGEVATARAAASCNTIMVLSFTSSSTIEEVA-ASSNAVRFYH-YMYSRNEI 481
            +N++++ A+  LPK  YD+Y  GA DE TL +N+ AF R    PR+L +V+  DLST++L  ++S PI +  TA  R+A+ +GE+AT RA  S  T M+LS  ++S+IEEVA A   A+R+   Y+Y   E+
Sbjct:    8 INDYEQHAKSVLPKSIYDYYRSGANDEETLADNIAAFSRWKLYPRMLRNVAETDLSTSVLGQRVSMPICVGATAMQRMAHVDGELATVRACQSLGTGMMLSSWATSSIEEVAEAGPEALRWLQLYIYKDREV 139          

HSP 2 Score: 58.9214 bits (141), Expect = 2.569e-34
Identity = 26/72 (36.11%), Postives = 45/72 (62.50%), Query Frame = 1
Query:  460 YVFKKRDITATLVQRAERNGFKALVLTADTPRLGRREADIKNKMITPPLKNLEGLLSTKVSSDTGSNFEADA 675
            Y++K R++T  LV++AE+ G+KA+ +T DTP LG R  D++N+   PP   ++   ++ +S     NF  D+
Sbjct:  132 YIYKDREVTKKLVRQAEKMGYKAIFVTVDTPYLGNRLDDVRNRFKLPPQLRMKNFETSTLSFSPEENFGDDS 203          
BLAST of FC930073 vs. ExPASy Swiss-Prot
Match: HAOX_DICDI (Hydroxyacid oxidase OS=Dictyostelium discoideum GN=haox PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 3.605e-33
Identity = 55/127 (43.31%), Postives = 82/127 (64.57%), Query Frame = 2
Query:   86 VNLNEFQELARLALPKMYYDFYAGGAEDEHTLKENVEAFHRITFRPRILVDVSRIDLSTTILDYKISAPIIIAPTAFHRLANPEGEVATARAAASCNTIMVLSFTSSSTIEEVAASSNAVRFYHYMY 466
            V+++E  E A+  LPKM YD+YA G+ D+ TL EN  AF RI   PR LVDVS+++  T I    IS PI+IAP A  R+A+  GE+ T  A+   NTIM LS  S++++E++++++N    +  +Y
Sbjct:   32 VSVSELHEEAKRLLPKMAYDYYASGSNDQITLAENENAFSRIKLVPRSLVDVSKVNTKTRIFGRDISTPILIAPWAMQRMASQRGELDTVEASKEFNTIMTLSSLSTTSVEDLSSATNGNPGWFQLY 158          

HSP 2 Score: 55.4546 bits (132), Expect = 3.605e-33
Identity = 32/73 (43.84%), Postives = 42/73 (57.53%), Query Frame = 1
Query:  460 YVFKKRDITATLVQRAERNGFKALVLTADTPRLGRREADIKNKMITP-----------PLKNLEGLLSTKVSS 645
            YVFK R ++  LV+RAE  G+ ALVLT DTP LG+R AD KN    P            L NL+G L+  +++
Sbjct:  158 YVFKDRKVSEELVKRAESIGYSALVLTVDTPFLGKRTADFKNSFKLPNGLSLKIFEKLMLSNLDGGLNQYIAT 230          
BLAST of FC930073 vs. ExPASy Swiss-Prot
Match: HAOX1_MOUSE (Hydroxyacid oxidase 1 OS=Mus musculus GN=Hao1 PE=2 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 2.470e-31
Identity = 55/134 (41.04%), Postives = 86/134 (64.18%), Query Frame = 2
Query:   86 VNLNEFQELARLALPKMYYDFYAGGAEDEHTLKENVEAFHRITFRPRILVDVSRIDLSTTILDYKISAPIIIAPTAFHRLANPEGEVATARAAASCNTIMVLSFTSSSTIEEVA-ASSNAVRFYH-YMYSRNEI 481
            V ++++++  R  L K  YD+Y  GA D+ TL +N++AF R    PR+L +V+ IDLST++L  ++S PI +  TA   +A+ +GE+AT RA  +  T M+LS  ++S+IEEVA A   A+R+   Y+Y   EI
Sbjct:    6 VCISDYEQHVRSVLQKSVYDYYRSGANDQETLADNIQAFSRWKLYPRMLRNVADIDLSTSVLGQRVSMPICVGATAMQCMAHVDGELATVRACQTMGTGMMLSSWATSSIEEVAEAGPEALRWMQLYIYKDREI 139          

HSP 2 Score: 56.6102 bits (135), Expect = 2.470e-31
Identity = 24/68 (35.29%), Postives = 42/68 (61.76%), Query Frame = 1
Query:  460 YVFKKRDITATLVQRAERNGFKALVLTADTPRLGRREADIKNKMITPPLKNLEGLLSTKVSSDTGSNF 663
            Y++K R+I+  +V+RAE+ G+KA+ +T DTP LG R  D++N+   PP   ++   +  ++     NF
Sbjct:  132 YIYKDREISRQIVKRAEKQGYKAIFVTVDTPYLGNRIDDVRNRFKLPPQLRMKNFETNDLAFSPKGNF 199          
BLAST of FC930073 vs. ExPASy Swiss-Prot
Match: HAOX2_BOVIN (Hydroxyacid oxidase 2 OS=Bos taurus GN=HAO2 PE=2 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 9.253e-31
Identity = 62/134 (46.27%), Postives = 89/134 (66.42%), Query Frame = 2
Query:   86 VNLNEFQELARLALPKMYYDFYAGGAEDEHTLKENVEAFHRITFRPRILVDVSRIDLSTTILDYKISAPIIIAPTAFHRLANPEGEVATARAAASCNTIMVLSFTSSSTIEE-VAASSNAVRFYH-YMYSRNEI 481
            V L +F+E AR  L K  +DF  GGA+D  T  EN+ AF +I  RPR L DVS++D+ TTI   +ISAPI IAPT FHRLA P+GE++TARAA + +   + S  +S ++E+ VAA+   +R++  Y++   +I
Sbjct:    4 VCLTDFREHAREHLSKSTWDFIEGGADDCCTRDENMAAFKKIRLRPRYLKDVSKVDMRTTIQGAEISAPICIAPTGFHRLAWPDGEMSTARAAQAASICYITSTYASCSLEDIVAAAPRGLRWFQLYVHPNRQI 137          

HSP 2 Score: 45.8246 bits (107), Expect = 9.253e-31
Identity = 20/44 (45.45%), Postives = 28/44 (63.64%), Query Frame = 1
Query:  460 YVFKKRDITATLVQRAERNGFKALVLTADTPRLGRREADIKNKM 591
            YV   R I   ++Q+ E  GFKALV+T D P++G R  DI N++
Sbjct:  130 YVHPNRQINKQMIQKVESLGFKALVITVDVPKVGNRRNDITNQV 173          
BLAST of FC930073 vs. ExPASy Swiss-Prot
Match: HAOX2_RAT (Hydroxyacid oxidase 2 OS=Rattus norvegicus GN=Hao2 PE=1 SV=2)

HSP 1 Score: 100.908 bits (250), Expect = 3.075e-28
Identity = 60/130 (46.15%), Postives = 82/130 (63.08%), Query Frame = 2
Query:   86 VNLNEFQELARLALPKMYYDFYAGGAEDEHTLKENVEAFHRITFRPRILVDVSRIDLSTTILDYKISAPIIIAPTAFHRLANPEGEVATARAAASCNTIMVLSFTSSSTIEE-VAASSNAVRFYH-YMYS 469
            V L +F+  A+  L K  +DF  G A+D  T  EN+ AF RI  RPR L D+S++D  TTI   +ISAPI I+PTAFH +A P+GE +TARAA   N   V+S  +S ++E+ VAA+    R++  YM S
Sbjct:    4 VCLADFKAHAQKQLSKTSWDFIEGEADDGITYSENIAAFKRIRLRPRYLRDMSKVDTRTTIQGQEISAPICISPTAFHSIAWPDGEKSTARAAQEANICYVISSYASYSLEDIVAAAPEGFRWFQLYMKS 133          

HSP 2 Score: 45.4394 bits (106), Expect = 3.075e-28
Identity = 28/71 (39.44%), Postives = 37/71 (52.11%), Query Frame = 1
Query:  460 YVFKKRDITATLVQRAERNGFKALVLTADTPRLGRREADIKNKMITPP---LKNLEGLLSTKVSSDTGSNF 663
            Y+    D    +VQRAE  GFKALV+T DTP LG R  D +N++       LK+L  L   K +     +F
Sbjct:  130 YMKSDWDFNKQMVQRAEALGFKALVITIDTPVLGNRRRDKRNQLNLEANILLKDLRALKEEKPTQSVPVSF 200          
BLAST of FC930073 vs. ExPASy Swiss-Prot
Match: CYB2_HANAN (Cytochrome b2, mitochondrial OS=Hansenula anomala GN=CYB2 PE=1 SV=2)

HSP 1 Score: 100.138 bits (248), Expect = 1.141e-27
Identity = 48/117 (41.03%), Postives = 75/117 (64.10%), Query Frame = 2
Query:   77 AEPVNLNEFQELARLALPKMYYDFYAGGAEDEHTLKENVEAFHRITFRPRILVDVSRIDLSTTILDYKISAPIIIAPTAFHRLANPEGEVATARAAASCNTIMVLSFTSSSTIEEVA 427
            ++ +NL++F+ +AR  LP     +Y   A+DE TL+EN  A+HRI F P+IL+DV  +D+ST     K SAP  I+ TA  +L +PEGEVA A+ A   + + ++S  +S + +E+A
Sbjct:  185 SQMINLHDFETIARQILPPPALAYYCSAADDEVTLRENHNAYHRIFFNPKILIDVKDVDISTEFFGEKTSAPFYISATALAKLGHPEGEVAIAKGAGREDVVQMISTLASCSFDEIA 301          

HSP 2 Score: 44.2838 bits (103), Expect = 1.141e-27
Identity = 22/43 (51.16%), Postives = 25/43 (58.14%), Query Frame = 1
Query:  460 YVFKKRDITATLVQRAERNGFKALVLTADTPRLGRREADIKNK 588
            YV   R IT   V+ AE  G K L +T D P LGRRE D+K K
Sbjct:  315 YVNADRSITEKAVRHAEERGMKGLFITVDAPSLGRREKDMKMK 357          
BLAST of FC930073 vs. ExPASy Swiss-Prot
Match: HAOX2_HUMAN (Hydroxyacid oxidase 2 OS=Homo sapiens GN=HAO2 PE=2 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 2.537e-27
Identity = 57/124 (45.97%), Postives = 76/124 (61.29%), Query Frame = 2
Query:   86 VNLNEFQELARLALPKMYYDFYAGGAEDEHTLKENVEAFHRITFRPRILVDVSRIDLSTTILDYKISAPIIIAPTAFHRLANPEGEVATARAAASCNTIMVLSFTSSSTIEE-VAASSNAVRFY 454
            V L +FQ  AR  L K   DF  GGA+D  T  +N+ AF RI  RPR L DVS +D  TTI   +ISAPI IAPT FH L  P+GE++TARAA +     + S  +S ++E+ V A+   +R++
Sbjct:    4 VCLTDFQAHAREQLSKSTRDFIEGGADDSITRDDNIAAFKRIRLRPRYLRDVSEVDTRTTIQGEEISAPICIAPTGFHCLVWPDGEMSTARAAQAAGICYITSTFASCSLEDIVIAAPEGLRWF 127          

HSP 2 Score: 44.2838 bits (103), Expect = 2.537e-27
Identity = 21/44 (47.73%), Postives = 27/44 (61.36%), Query Frame = 1
Query:  460 YVFKKRDITATLVQRAERNGFKALVLTADTPRLGRREADIKNKM 591
            YV     +   L+QR E  GFKALV+T DTP  G R  DI+N++
Sbjct:  130 YVHPDLQLNKQLIQRVESLGFKALVITLDTPVCGNRRHDIRNQL 173          
The following BLAST results are available for this feature:
BLAST of FC930073 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 77
Match NameE-valueIdentityDescription
GOX1_ARATH8.611e-5252.59Probable peroxisomal (S)-2-hydroxy-acid oxidase 1 ... [more]
GOX_SPIOL8.887e-3755.71Peroxisomal (S)-2-hydroxy-acid oxidase OS=Spinacia... [more]
GOX2_ARATH4.411e-3653.57Probable peroxisomal (S)-2-hydroxy-acid oxidase 2 ... [more]
HAOX1_HUMAN2.569e-3443.18Hydroxyacid oxidase 1 OS=Homo sapiens GN=HAO1 PE=1... [more]
HAOX_DICDI3.605e-3343.31Hydroxyacid oxidase OS=Dictyostelium discoideum GN... [more]
HAOX1_MOUSE2.470e-3141.04Hydroxyacid oxidase 1 OS=Mus musculus GN=Hao1 PE=2... [more]
HAOX2_BOVIN9.253e-3146.27Hydroxyacid oxidase 2 OS=Bos taurus GN=HAO2 PE=2 S... [more]
HAOX2_RAT3.075e-2846.15Hydroxyacid oxidase 2 OS=Rattus norvegicus GN=Hao2... [more]
CYB2_HANAN1.141e-2741.03Cytochrome b2, mitochondrial OS=Hansenula anomala ... [more]
HAOX2_HUMAN2.537e-2745.97Hydroxyacid oxidase 2 OS=Homo sapiens GN=HAO2 PE=2... [more]

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Properties
Property NameValue
Genbank descriptionC34003E04EF PostHarvC1 Citrus clementina cDNA clone C34003E04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930073 ID=FC930073; Name=FC930073; organism=Citrus clementina; type=EST; length=697bp
GGACTCACTGTTGTAATCTGCTTCACGATCGACCTTCATCAGTTGAAATT
TTTAGTCATTCGGGTTTCACATGGCAGCTGAACCTGTTAATTTGAATGAG
TTCCAAGAATTGGCAAGGCTGGCCCTTCCAAAAATGTATTATGATTTCTA
CGCTGGTGGAGCAGAAGATGAACATACCCTAAAAGAGAATGTGGAAGCCT
TTCATAGAATTACGTTTCGGCCAAGAATTCTTGTCGATGTCAGCAGAATA
GATTTATCGACTACTATACTTGATTACAAAATCTCGGCTCCCATTATCAT
TGCTCCAACGGCTTTCCATAGGCTTGCAAACCCTGAAGGAGAAGTAGCCA
CAGCCAGAGCAGCAGCTTCATGTAACACCATAATGGTTTTATCCTTCACA
TCTAGCAGCACCATAGAGGAGGTTGCGGCCAGCTCCAATGCTGTTCGCTT
CTATCATTATATGTATTCAAGAAACGAGATATAACAGCTACTCTAGTGCA
GAGAGCTGAAAGGAATGGTTTTAAGGCTCTTGTCCTAACTGCTGATACTC
CAAGACTTGGTAGAAGGGAGGCAGATATAAAGAACAAAATGATTACACCG
CCGTTGAAGAATTTGGAAGGCCTCTTATCAACCAAAGTCAGCTCTGATAC
AGGTTCGAATTTTGAAGCTGATGCCNATGAGACCATGGATGCTTCTT
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