FC930078

Overview
NameFC930078
Unique NameFC930078
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length738
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of FC930078 vs. ExPASy Swiss-Prot
Match: SKI11_ARATH (F-box/kelch-repeat protein SKIP11 OS=Arabidopsis thaliana GN=SKIP11 PE=1 SV=2)

HSP 1 Score: 80.8777 bits (198), Expect = 8.087e-15
Identity = 65/151 (43.05%), Postives = 80/151 (52.98%), Query Frame = 1 
Query:  340 MLEGRC---LLTSREITSLCHPESKWS--YMTCMIDL----NGKRPLEIDGDDDCHHQRNKSLKL---------SNSRKTAGTSREQSDDDQGSDDNLQSEDNQQADDHQQSNAGHSSDLDSLIQPIGRDDSISCLIRCLRSDYGSIASLN 738
            MLE R     L++R  +S    ES WS  YM    D     NGKR LE+ G+     ++ KSLKL          +S  +     EQ+D   G   + + E  QQ+D +   N G SSD  SLI  IGRD+SI CLIRC RSDYGSIASLN
Sbjct:    1 MLEDRSPDSCLSTRVFSSSRLSESNWSNSYMYPEDDDKLLGNGKRALEVVGEV----RQTKSLKLMGFSIIYDSDSSDYSLSGGEEQADAAIGDGSSSRQEQEQQSDFND--NGGDSSDSHSLINEIGRDNSIDCLIRCSRSDYGSIASLN 145
The following BLAST results are available for this feature:
BLAST of FC930078 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
SKI11_ARATH8.087e-1543.05F-box/kelch-repeat protein SKIP11 OS=Arabidopsis t... [more]
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Properties
Property NameValue
Genbank descriptionC34003E09EF PostHarvC1 Citrus clementina cDNA clone C34003E09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930078 ID=FC930078; Name=FC930078; organism=Citrus clementina; type=EST; length=738bp
GCCGGGGCTCCCTCTTTTGTTTTTATTTTTTGTTAAAACGTTTTCTTCTG
TTTCATTTCATTTCTTATATTTTTGTTTTTCTCTTTTCATTTTTTATTTA
TTTCGGAAATGAGAAATTAAAGGATAAGTTTTCGGTTACGGGTATCAAAT
TGGAATCAGATCTCAATTAATTGGATTTCTGTTCATTTAAATCTTGTATT
TCGACTCCTAAATTTGGGTGATTCTTCATTGTCTCAACTGCAATTTTCGG
GGACTCGACTTTACTGAGCGGCAACACTGGAGCTGAGGTGAGTTGTGTTG
TTGCTGTTGTTATTTTGCTTTGGTGGTAATTGAAAAGATATGTTGGAAGG
TCGATGCTTGCTGACATCAAGGGAAATAACTAGCTTGTGCCATCCAGAAT
CCAAGTGGTCTTACATGACCTGTATGATAGACCTAAATGGCAAGCGACCA
TTAGAAATTGATGGCGATGATGATTGTCATCACCAACGTAACAAATCCTT
AAAGCTATCCAATTCTCGTAAAACAGCAGGAACTTCGCGGGAGCAATCTG
ATGATGATCAGGGATCTGATGATAACTTACAGTCTGAAGATAATCAGCAG
GCTGATGATCATCAGCAATCAAATGCCGGGCATTCTTCGGATTTGGACTC
ACTTATTCAACCTATTGGTCGGGACGACTCCATTAGTTGTCTTATTCGTT
GCTTGAGGTCTGACTATGGTTCTATTGCGTCTCTGAAT
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