FC930080

Overview
NameFC930080
Unique NameFC930080
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length720
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10577 contig Ccv1_Contig10577:9..728. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC930080 vs. ExPASy Swiss-Prot
Match: P2_ARATH (Probable NADP-dependent oxidoreductase P2 OS=Arabidopsis thaliana GN=P2 PE=2 SV=2)

HSP 1 Score: 318.161 bits (814), Expect = 2.873e-86
Identity = 156/219 (71.23%), Postives = 183/219 (83.56%), Query Frame = 1
Query:   70 SNKRVILSNYVTGFPKESDMKITSGSIKLKVAEGSKDTVLLKNLYLSCDPYMRWRMSKLDRPS-FVDSFHPGEPINGYGVAKVLDSTHPNYAKDDLVWGFTGWEEYSLVTA-PQILIKIQHTDVPLSYYTGILGMPGVTAYAGLYEVCSPKKGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEKVDLLKNKFGFDDAFNYKEEPDLDAALKRCF 720
            +NK+VI  ++V+GFPKESD   T+ +++L+V EGSK +VL+KNLYLSCDPYMR RM K D  S    ++ PG+PI GYGV++V++S HP+Y K DL+WG  GWEEYS++T    +  KIQHTDVPLSYYTG+LGMPG+TAYAG YEVCSPKKGE VYVSAASGAVGQLVGQFAK+ GCYVVGSAGSKEKVDLLK KFGFDDAFNYKEE DL AALKRCF
Sbjct:    3 TNKQVIFKDHVSGFPKESDFNFTTTTVELRVPEGSK-SVLVKNLYLSCDPYMRSRMGKPDPSSALAQAYAPGKPIYGYGVSRVIESGHPDYKKGDLLWGIVGWEEYSVITPMAHMHFKIQHTDVPLSYYTGLLGMPGMTAYAGFYEVCSPKKGETVYVSAASGAVGQLVGQFAKMMGCYVVGSAGSKEKVDLLKTKFGFDDAFNYKEESDLSAALKRCF 220          
BLAST of FC930080 vs. ExPASy Swiss-Prot
Match: P1_ARATH (Probable NADP-dependent oxidoreductase P1 OS=Arabidopsis thaliana GN=P1 PE=1 SV=1)

HSP 1 Score: 308.531 bits (789), Expect = 2.276e-83
Identity = 150/220 (68.18%), Postives = 180/220 (81.82%), Query Frame = 1
Query:   70 SNKRVILSNYVTGFPKESDMKITSGSIKLKVAEGSKDTVLLKNLYLSCDPYMRWRMSKLD--RPSFVDSFHPGEPINGYGVAKVLDSTHPNYAKDDLVWGFTGWEEYSLVTA-PQILIKIQHTDVPLSYYTGILGMPGVTAYAGLYEVCSPKKGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEKVDLLKNKFGFDDAFNYKEEPDLDAALKRCF 720
            +NK+VIL +YV+GFP ESD   T+ +++L+V EG+ ++VL+KNLYLSCDPYMR RM K D    +   ++ PG+PI GYGV+++++S HP+Y K DL+WG   WEEYS++T       KIQHTDVPLSYYTG+LGMPG+TAYAG YEVCSPK+GE VYVSAASGAVGQLVGQ AK+ GCYVVGSAGSKEKVDLLK KFGFDDAFNYKEE DL AALKRCF
Sbjct:    4 TNKQVILKDYVSGFPTESDFDFTTTTVELRVPEGT-NSVLVKNLYLSCDPYMRIRMGKPDPSTAALAQAYTPGQPIQGYGVSRIIESGHPDYKKGDLLWGIVAWEEYSVITPMTHAHFKIQHTDVPLSYYTGLLGMPGMTAYAGFYEVCSPKEGETVYVSAASGAVGQLVGQLAKMMGCYVVGSAGSKEKVDLLKTKFGFDDAFNYKEESDLTAALKRCF 222          
BLAST of FC930080 vs. ExPASy Swiss-Prot
Match: YFMJ_BACSU (Putative NADP-dependent oxidoreductase yfmJ OS=Bacillus subtilis GN=yfmJ PE=2 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 7.932e-36
Identity = 92/215 (42.79%), Postives = 126/215 (58.60%), Query Frame = 1
Query:   70 SNKRVILSNYVTGFPKESDMKITSGSIKLKVAEGSKDTVLLKNLYLSCDPYMRWRMSKLDRPSFVDSFHPGEPINGYGVAKVL-DSTHPNYAKDDLVWGFTGWEEYSLVTAPQILIKIQHTDVPLSYYTGILGMPGVTAYAGLYEVCSPKKGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEKVDLLKNKFGFDDAFNYKEEPDLDAALK 711
            S +++ L+    G P   D +  +    + V E  +  VL+K LY+S DPYMR RM   D  S+V+ F   + ++G  +A+V+ D  H    K D+V G   W+E+S V+    L KI  +  P S Y GILGM G+TAY GL ++  PK+GE V VS A+GAVG  VGQ AK+ G  VVG AGS EK+D LK +  FD+A NYK   D+  AL+
Sbjct:    4 SQQQIQLARRPQGIPVHEDFRFET----IPVPEPKQGEVLVKTLYVSVDPYMRGRMQ--DTKSYVEPFALDKALSGGVIAEVVSDGNH--LKKGDIVIGNLSWQEFSAVSE-SALRKIDTSLAPASAYLGILGMTGLTAYFGLLDIGRPKEGETVVVSGAAGAVGSTVGQIAKIKGARVVGIAGSDEKIDYLKQELQFDEAINYKTADDIQKALQ 209          
BLAST of FC930080 vs. ExPASy Swiss-Prot
Match: PTGR1_RABIT (Prostaglandin reductase 1 OS=Oryctolagus cuniculus GN=PTGR1 PE=2 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 6.715e-35
Identity = 89/218 (40.83%), Postives = 126/218 (57.80%), Query Frame = 1
Query:   67 VSNKRVILSNYVTGFPKESDMKITSGSIKLKVAEGSKDTVLLKNLYLSCDPYMRWRMSKLDRPSFVDSFHPGEPINGYGVAKVLDSTHPNYAKDDLVWGFTGWEEYSLVTAPQI--LIKIQHTDVPLSYYTGILGMPGVTAYAGLYEVCSPKKGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEKVDLLKNKFGFDDAFNYKEEPDLDAALKR 714
            V  K   L  +  G P +SD ++ +    +++   +   VLL+ L+LS DPYMR    +L           G+ + G  VA+V++S +P +    LV   +GW  +S+    Q+  L+      +PLS   G +GMPG+TAY GL E+C  K G+ V V+AA+GAVG +VGQ AK+ GC VVG+AGS+EKVD LK K GFD AFNYK    L+  LK+
Sbjct:    2 VRAKNWTLKKHFHGHPTDSDFELKT----VELPPLNNGEVLLEALFLSVDPYMRLGSKRLKE---------GDTMMGQQVARVVESKNPAWPVGTLVLAHSGWASHSISDGQQLEKLLTEWPDTLPLSLALGTVGMPGITAYFGLLEICGAKSGDTVLVNAAAGAVGAVVGQIAKIKGCRVVGAAGSEEKVDYLK-KIGFDFAFNYKTVKSLEETLKK 205          
BLAST of FC930080 vs. ExPASy Swiss-Prot
Match: YKM8_SCHPO (Zinc-type alcohol dehydrogenase-like protein PB24D3.08c OS=Schizosaccharomyces pombe GN=SPAPB24D3.08c PE=2 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 7.425e-34
Identity = 92/226 (40.71%), Postives = 124/226 (54.87%), Query Frame = 1
Query:   67 VSNKRVILSNYV---TGFPKESD-MKITSGSIKLKVAEGSKDT-VLLKNLYLSCDPYMRWRMSKLDRPSFVDSFHPGEPINGYGVAKVLDSTHPNYAKDDLVWGFTGWEEYSLVTAPQILIKIQHTD----VPLSYYTGILGMPGVTAYAGLYEVCSPKKGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEKVDLLKNKFGFDDAFNYKEEPDLDAALKRC 717
            VSN  VI+  Y+    G+P   + +        L+ A+  ++T VLLKN+Y S DPY+R RM      S++     G+P     VAKV+ ST   Y     V   +GWEEY+ V+  Q L  +Q  +    +PL  + G LGMP  TAY GL  +  PK GE +Y+SAASGAVGQ+ GQ AK  G +VVGS GS EK  +  +  G+D  FNYK+E    A  + C
Sbjct:    2 VSNNAVIIKKYLDSTAGYPVIGEHLAFEKREFDLENAQVDEETPVLLKNIYTSVDPYLRMRMQSPKHASYIPPLELGKPFYNSTVAKVVKSTLDQYKPGMDVVFVSGWEEYTFVSK-QALGFLQPINNPYKLPLIDFVGSLGMPSQTAYCGLKHIGKPKAGETIYISAASGAVGQMAGQLAKAMGLHVVGSVGSDEKFKICLDS-GYDSVFNYKKESPFKALPRLC 225          
BLAST of FC930080 vs. ExPASy Swiss-Prot
Match: YNCB_ECOLI (Putative NADP-dependent oxidoreductase yncB OS=Escherichia coli (strain K12) GN=yncB PE=3 SV=3)

HSP 1 Score: 142.51 bits (358), Expect = 2.160e-33
Identity = 82/220 (37.27%), Postives = 120/220 (54.55%), Query Frame = 1
Query:   58 QEAVSNKRVILSNYVTGFPKESDMKITSGSIKLKVAEGSKDTVLLKNLYLSCDPYMRWRMSKLDRPSFVDSFHPGEPINGYGVAKVLDSTHPNYAKDDLVWGFTGWEEYSLVTAPQILIKIQHTDVPLSYYTGILGMPGVTAYAGLYEVCSPKKGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEKVDLLKNKFGFDDAFNYKEEPDLDAALKRC 717
            Q+   N+R +L++   G P   + ++        VA   +  VLL+ +YLS DPYMR RMS  D PS+      G  + G  V++V++S HP+Y   D V G++GW++Y + +   ++    H   P S+  G+LGMPG TAY GL ++  PK+GE + V+AA+G VG  VGQ  KL GC VVG AG  EK        GFD   ++  +   +   K C
Sbjct:    3 QQKQRNRRWVLASRPHGAPVPENFRLEEDD----VATPGEGQVLLRTVYLSLDPYMRGRMS--DEPSYSPPVDIGGVMVGGTVSRVVESNHPDYQSGDWVLGYSGWQDYDISSGDDLVKLGDHPQNP-SWSLGVLGMPGFTAYMGLLDIGQPKEGETLVVAAATGPVGATVGQIGKLKGCRVVGVAGGAEKCRHATEVLGFDVCLDHHADDFAEQLAKAC 215          
BLAST of FC930080 vs. ExPASy Swiss-Prot
Match: PTGR1_MOUSE (Prostaglandin reductase 1 OS=Mus musculus GN=Ptgr1 PE=2 SV=2)

HSP 1 Score: 140.969 bits (354), Expect = 6.285e-33
Identity = 93/220 (42.27%), Postives = 123/220 (55.91%), Query Frame = 1
Query:   67 VSNKRVILSNYVTGFPKESDMKITSGSIKLKVAEG---SKDTVLLKNLYLSCDPYMRWRMSKLDRPSFVDSFHPGEPINGYGVAKVLDSTHPNYAKDDLVWGFTGWEEYSLVTAPQIL-IKIQHTD-VPLSYYTGILGMPGVTAYAGLYEVCSPKKGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEKVDLLKNKFGFDDAFNYKEEPDLDAALK 711
            V  K   L  +  GFP       T G+ +LK  E    +   VLL+ L+LS DPYMR    KL           G+ + G  VA+V++S +  + K  +V    GW  +S+     +  + ++  D +PLS   G +GMPG+TAY GL ++C  K GE V VSAA+GAVG +VGQ AKL GC VVG+AGS EKV  LK K GFD AFNYK    L+ AL+
Sbjct:    2 VQAKSWTLKKHFEGFP-------TDGNFELKTTELPPLNNGEVLLEALFLSVDPYMRVAAKKLKE---------GDRMMGEQVARVVESKNSAFPKGTIVAALLGWTSHSISDGNGLTKLPVEWPDKLPLSLALGTVGMPGLTAYFGLLDICGVKGGETVMVSAAAGAVGSVVGQIAKLKGCKVVGTAGSDEKVAYLK-KLGFDVAFNYKTVKSLEEALR 204          
BLAST of FC930080 vs. ExPASy Swiss-Prot
Match: PTGR1_HUMAN (Prostaglandin reductase 1 OS=Homo sapiens GN=PTGR1 PE=1 SV=2)

HSP 1 Score: 137.117 bits (344), Expect = 9.076e-32
Identity = 88/219 (40.18%), Postives = 119/219 (54.34%), Query Frame = 1
Query:   67 VSNKRVILSNYVTGFPKESDMKITSGSIK-LKVAEGSKDTVLLKNLYLSCDPYMRWRMSKLDRPSFVDSFHPGEPINGYGVAKVLDSTHPNYAKDDLVWGFTGWEEYSLVTAPQI--LIKIQHTDVPLSYYTGILGMPGVTAYAGLYEVCSPKKGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEKVDLLKNKFGFDDAFNYKEEPDLDAALKR 714
            V  K   L  +  G+P  SD ++ +  +  LK  E     VLL+ L+L+ DPYMR    +L           G+ + G  VAKV++S +    K  +V    GW  +S+     +  L+      +PLS   G +GMPG+TAY GL E+C  K GE V V+AA+GAVG +VGQ AKL GC VVG+ GS EKV  L+ K GFD  FNYK    L+  LK+
Sbjct:    2 VRTKTWTLKKHFVGYPTNSDFELKTAELPPLKNGE-----VLLEALFLTVDPYMRVAAKRLKE---------GDTMMGQQVAKVVESKNVALPKGTIVLASPGWTTHSISDGKDLEKLLTEWPDTIPLSLALGTVGMPGLTAYFGLLEICGVKGGETVMVNAAAGAVGSVVGQIAKLKGCKVVGAVGSDEKVAYLQ-KLGFDVVFNYKTVESLEETLKK 205          
BLAST of FC930080 vs. ExPASy Swiss-Prot
Match: PTGR1_BOVIN (Prostaglandin reductase 1 OS=Bos taurus GN=PTGR1 PE=2 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 2.641e-31
Identity = 91/218 (41.74%), Postives = 124/218 (56.88%), Query Frame = 1
Query:   67 VSNKRVILSNYVTGFPKESDMKITSGSIK-LKVAEGSKDTVLLKNLYLSCDPYMRWRMSKLDRPSFVDSFHPGEPINGYGVAKVLDSTHPNYAKDDLVWGFTGWEEYSLVTAPQI--LIKIQHTDVPLSYYTGILGMPGVTAYAGLYEVCSPKKGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEKVDLLKNKFGFDDAFNYKEEPDLDAALK 711
            V  K   L  +  G+P  SD ++ +  +  LK  E     VLL+ LYL+ DPYMR  M+K        S   G+ + G  VA+V++S +  +    +V   +GW  +S+    ++  ++      +PLS   G +GMPG+TAY GL ++C  K GE V VSAA+GAVG +VGQ AKL GC VVG+AGS EKV  LK K GFD A NYK    L+ ALK
Sbjct:    2 VHAKSWTLKKHFVGYPTNSDFELKTVELPPLKDGE-----VLLEALYLTVDPYMRI-MAK--------SLKEGDMMMGEQVARVVESKNSAFPTGTIVLAPSGWTTHSISNGEKLEKVLAEWPDTLPLSLALGTVGMPGLTAYFGLLDICGVKGGETVLVSAAAGAVGSIVGQIAKLKGCKVVGTAGSDEKVAWLK-KHGFDVALNYKTVKSLEEALK 204          
BLAST of FC930080 vs. ExPASy Swiss-Prot
Match: PTGR1_PIG (Prostaglandin reductase 1 OS=Sus scrofa GN=PTGR1 PE=1 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 3.449e-31
Identity = 88/219 (40.18%), Postives = 122/219 (55.71%), Query Frame = 1
Query:   67 VSNKRVILSNYVTGFPKESDMKITSGSIK-LKVAEGSKDTVLLKNLYLSCDPYMRWRMSKLDRPSFVDSFHPGEPINGYGVAKVLDSTHPNYAKDDLVWGFTGWEEYSLVTAPQI--LIKIQHTDVPLSYYTGILGMPGVTAYAGLYEVCSPKKGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEKVDLLKNKFGFDDAFNYKEEPDLDAALKR 714
            V  K   L  +  G+P  S+ ++ +  +  LK  E     VLL+ L+L+ DPYMR    KL           G+ + G  VA+V++S +  +    +V    GW  +S+     +  L+      +PLS   G +GMPG+TAY GL ++C  K GE V V+AA+GAVG +VGQ AKL GC VVG+AGS EKV  LK K+GFD AFNYK    L+  LK+
Sbjct:    2 VRAKSWTLKKHFVGYPTPSNFELKTVELPPLKNGE-----VLLEALFLTVDPYMRIAARKLKE---------GDMMMGEQVARVIESKNAAFPTGTIVVALLGWTTHSISDGKNLERLLAEWPDTLPLSLTLGTVGMPGLTAYFGLLDICGLKGGETVMVNAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKVACLK-KYGFDVAFNYKTIESLEETLKK 205          
The following BLAST results are available for this feature:
BLAST of FC930080 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 17
Match NameE-valueIdentityDescription
P2_ARATH2.873e-8671.23Probable NADP-dependent oxidoreductase P2 OS=Arabi... [more]
P1_ARATH2.276e-8368.18Probable NADP-dependent oxidoreductase P1 OS=Arabi... [more]
YFMJ_BACSU7.932e-3642.79Putative NADP-dependent oxidoreductase yfmJ OS=Bac... [more]
PTGR1_RABIT6.715e-3540.83Prostaglandin reductase 1 OS=Oryctolagus cuniculus... [more]
YKM8_SCHPO7.425e-3440.71Zinc-type alcohol dehydrogenase-like protein PB24D... [more]
YNCB_ECOLI2.160e-3337.27Putative NADP-dependent oxidoreductase yncB OS=Esc... [more]
PTGR1_MOUSE6.285e-3342.27Prostaglandin reductase 1 OS=Mus musculus GN=Ptgr1... [more]
PTGR1_HUMAN9.076e-3240.18Prostaglandin reductase 1 OS=Homo sapiens GN=PTGR1... [more]
PTGR1_BOVIN2.641e-3141.74Prostaglandin reductase 1 OS=Bos taurus GN=PTGR1 P... [more]
PTGR1_PIG3.449e-3140.18Prostaglandin reductase 1 OS=Sus scrofa GN=PTGR1 P... [more]

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Properties
Property NameValue
Genbank descriptionC34003E11EF PostHarvC1 Citrus clementina cDNA clone C34003E11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930080 ID=FC930080; Name=FC930080; organism=Citrus clementina; type=EST; length=720bp
GAAACAATTCTGATTTTCCTGCCAGAGAAAAAAAACTGAGAAACAATGGC
GGCTGAACAAGAAGCTGTGAGCAATAAGCGGGTGATTCTGAGCAACTATG
TGACAGGTTTTCCAAAAGAATCAGACATGAAGATAACAAGTGGATCAATA
AAGCTGAAGGTAGCAGAGGGTTCAAAAGACACAGTGCTTTTGAAGAATCT
TTATCTTTCTTGTGATCCTTACATGCGATGGCGTATGAGCAAGCTTGATA
GACCTTCTTTTGTTGATTCATTCCATCCTGGTGAGCCTATAAATGGTTAT
GGGGTAGCTAAAGTTTTGGATTCTACACATCCAAATTATGCAAAAGATGA
CTTGGTTTGGGGCTTTACCGGGTGGGAGGAGTACAGTCTCGTTACAGCCC
CACAGATTTTGATTAAAATTCAGCATACAGATGTGCCCCTTTCATACTAT
ACTGGAATCCTTGGTATGCCTGGTGTGACCGCATACGCTGGTTTATACGA
AGTTTGCTCTCCGAAGAAAGGTGAGTATGTCTATGTATCTGCAGCATCTG
GAGCTGTTGGTCAGCTTGTTGGCCAATTTGCAAAATTGGCTGGTTGCTAT
GTTGTTGGAAGTGCTGGAAGCAAAGAAAAGGTCGATTTGTTGAAGAACAA
GTTTGGATTTGATGATGCTTTTAACTACAAGGAAGAGCCAGACTTGGATG
CAGCACTCAAAAGATGCTTC
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