FC930083

Overview
NameFC930083
Unique NameFC930083
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length685
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig2062 contig Ccv1_Contig2062:75..760. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC930083 vs. ExPASy Swiss-Prot
Match: FA18_ARATH (Uncharacterized FAM18-like protein At1g09330 OS=Arabidopsis thaliana GN=At1g09330 PE=2 SV=1)

HSP 1 Score: 320.857 bits (821), Expect = 4.062e-87
Identity = 153/175 (87.43%), Postives = 165/175 (94.29%), Query Frame = 1
Query:   97 QPPGENYANPKTCFFHVLFKGAALAFYILSALFFDSFVIIFVVTVLLAALDFWVVKNVSGRILVGLRWWNEINDMGESVWKFECLDHESMARMNKKDSWLFWWTLYLSAVAWIVLGIFSLIRFQADYLLVVGVCLTLSIANIIGFTKCRKDAKKQIQQFASQTIASGFTSTLQSA 621
            Q P ENYANP+TC FHVLFKGAALAFYILSALFF+SFVIIFVVTVLLAALDFWVVKNVSGRILVGLRWWNEIND+GESVWKFE LD ES+ARMNKKDSWLFWWTLYL+A AW +LG+FSLIRFQADYLLVVGVCL+L++ANIIGFTKC+KDAKKQ QQFASQTIAS F ST+QSA
Sbjct:    8 QAPVENYANPRTCLFHVLFKGAALAFYILSALFFNSFVIIFVVTVLLAALDFWVVKNVSGRILVGLRWWNEINDLGESVWKFESLDQESLARMNKKDSWLFWWTLYLAAAAWFILGVFSLIRFQADYLLVVGVCLSLNVANIIGFTKCKKDAKKQFQQFASQTIASRFQSTVQSA 182          
BLAST of FC930083 vs. ExPASy Swiss-Prot
Match: FA18_DROME (Uncharacterized FAM18-like protein CG5021 OS=Drosophila melanogaster GN=CG5021 PE=2 SV=2)

HSP 1 Score: 144.05 bits (362), Expect = 6.805e-34
Identity = 68/166 (40.96%), Postives = 100/166 (60.24%), Query Frame = 1
Query:  106 GENYANPKTCFFHVLFKGAALAFYILSALFFDSFVIIFVVTVLLAALDFWVVKNVSGRILVGLRWWNEINDMGESVWKFECLDHES-MARMNKKDSWLFWWTLYLSAVAWIVLGIFSLIRFQADYLLVVGVCLTLSIANIIGFTKCRKDAKKQIQQFASQTIASGF 600
            G+ Y +P   FFH+ F+GAA+  Y+    F DSF+  FV  VL  + DFW VKN+SGR+LVGLRWWN ++D G S W FE  + ES  +R+NK +  +FW  L L  V W +  +F+L   +  +LL+V + + L+ AN+ G+ KC   A K +   A+  + + F
Sbjct:   32 GQKYTHPYVTFFHLFFRGAAILIYMFCGWFSDSFITSFVFVVLFLSADFWTVKNISGRLLVGLRWWNYVDDDGVSHWVFESKNSESYQSRVNKNEQRIFWLGLILCPVFWGLFFLFALFGLKFKWLLLVMIAIALNAANLYGYVKCNYGANKDLNSAATDFVKTQF 197          
BLAST of FC930083 vs. ExPASy Swiss-Prot
Match: TVP23_SCHPO (Golgi apparatus membrane protein tvp23 OS=Schizosaccharomyces pombe GN=tvp23 PE=2 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 1.419e-31
Identity = 72/167 (43.11%), Postives = 101/167 (60.48%), Query Frame = 1
Query:  118 ANPKTCFFHVLFKGAALAFYILSALFFDSFVIIFVVTVLLAALDFWVVKNVSGRILVGLRWWNEINDMGESVWKFECLDHESMARMNKKDSWLFWWTLYLSAVAWIVLGIFSLIRFQADYLLVVGVCLTLSIANIIGFTKCRKDAKKQIQQFASQTIASGFTSTLQS 618
            ++P   FF +LF+  A+  YIL   F  SF+++F+V   L A+D W VKNVSGR+LVGLRW NE    GES+W FE  D  S  R N  D   FW+ LYL    WI+LGI ++IRF+  +L +V V + L+  N   +++C KDAK++     + + +SGF S   S
Sbjct:   46 SHPVALFFFLLFRTGAIVAYILGMFFTSSFMLLFIVIFTLLAVDLWTVKNVSGRLLVGLRWRNETGVDGESIWIFESAD-PSRPR-NAVDQKTFWYALYLYPFIWIILGIVAIIRFEFLWLALVAVAIGLTSVNTAAYSRCDKDAKRRWATELADSNSSGFVSRFLS 210          
BLAST of FC930083 vs. ExPASy Swiss-Prot
Match: FA18A_DICDI (Uncharacterized FAM18-like protein 1 OS=Dictyostelium discoideum GN=DDB_G0276319 PE=3 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 5.392e-31
Identity = 67/165 (40.61%), Postives = 99/165 (60.00%), Query Frame = 1
Query:   94 NQPPGENYANPKTCFFHVLFKGAALAFYILSALFFDSFVIIFVVTVLLAALDFWVVKNVSGRILVGLRWWNEINDMGESVWKFECLDHESMARMNKKDSWLFWWTLYLSAVAWIVLGIFSLIRFQADYLLVVGVCLTLSIANIIGFTKCRKDAKKQIQQFASQTI 588
            +QP      +P + FFH+ FK  A+A +ILS+     FV+ F++  L +A DFWV KNV+GR LVGLRWWN+I + G + W FE +  +S  ++N  +S +FW  +     AW V  I SL      +L+V  VC  L+ AN++G+ KC KDA+K+++  A   I
Sbjct:   24 SQPQSNAPKHPISVFFHLFFKIVAVAIFILSSFVNIGFVLTFIIVTLSSAFDFWVTKNVTGRKLVGLRWWNQIKEDGTNNWVFESVQDKS--QVNPAESLMFWVPVLAFTAAWFVFSIISLFGLSFLWLVVEIVCFLLAGANLLGYIKCAKDARKKVKGMAQSYI 186          
BLAST of FC930083 vs. ExPASy Swiss-Prot
Match: TVP23_YARLI (Golgi apparatus membrane protein TVP23 OS=Yarrowia lipolytica GN=TVP23 PE=3 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 7.786e-30
Identity = 61/146 (41.78%), Postives = 95/146 (65.07%), Query Frame = 1
Query:  118 ANPKTCFFHVLFKGAALAFYILSALFFDSFVIIFVVTVLLAALDFWVVKNVSGRILVGLRWWNEINDMGESVWKFECLDHESMARMNKKDSWLFWWTLYLSAVAWIVLGIFSLIRFQADYLLVVGVCLTLSIANIIGFTKCRKDAK 555
            ++P    F + F+  AL  Y+   LF D FV++FV+ VLL A DFW VKN++GR++VGLRWWNE ++ GESVW FE  D +    +N  DS +FW  LY + V W+ L + +L++FQ   L++V + ++L++ N + +++C K  K
Sbjct:   11 SHPVALVFFLAFRLGALFTYMFGLLFTDKFVLMFVLVVLLLAADFWNVKNIAGRLMVGLRWWNEASETGESVWVFETADPQRY--INPIDSKVFWMMLYGAPVLWVCLAVLALLKFQFLSLILVFIAVSLTVTNAMAYSRCDKFGK 154          
BLAST of FC930083 vs. ExPASy Swiss-Prot
Match: TVP23_COCIM (Golgi apparatus membrane protein TVP23 OS=Coccidioides immitis GN=TVP23 PE=3 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 1.328e-29
Identity = 67/167 (40.12%), Postives = 101/167 (60.48%), Query Frame = 1
Query:  118 ANPKTCFFHVLFKGAALAFYILSALFFDSFVIIFVVTVLLAALDFWVVKNVSGRILVGLRWWNEIN-DMGESVWKFECLDHESMARMNKKDSWLFWWTLYLSAVAWIVLGIFSLIRFQA-DYLLVVGVCLTLSIANIIGFTKCRKDAKKQIQQFASQTIASGFTSTL 612
            A+P T  F + F+  +L  Y+   LF   FV++F++T+LL + DF+ +KN++GR LVGLRWWNE+N   G+S W FE  D  +   +N  D   FW +LY +   WI L I ++IR Q+  +L +VG+ L L++ N + F++C  D   Q   FAS  ++ G TS L
Sbjct:   15 AHPITLLFFLGFRIGSLLMYLFGVLFISDFVLVFILTLLLLSADFYYLKNIAGRRLVGLRWWNEVNTSTGDSNWVFESSDPNTRT-INATDKRFFWLSLYATPALWIGLAILAIIRLQSVIWLSLVGIALILTVTNTLAFSRC--DRFSQASTFASSALSGGITSNL 178          
BLAST of FC930083 vs. ExPASy Swiss-Prot
Match: TVP23_LACBS (Golgi apparatus membrane protein TVP23 OS=Laccaria bicolor (strain S238N-H82) GN=TVP23 PE=3 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 1.468e-28
Identity = 66/148 (44.59%), Postives = 94/148 (63.51%), Query Frame = 1
Query:  118 ANPKTCFFHVLFKGAALAFYILSALFFDSFVIIFVVTVLLAALDFWVVKNVSGRILVGLRWWNEINDMGESVWKFECLDHESMARMNKKDSWLFWWTLYLSAVAWIVLGIFSLIRFQADYLLVVGVCLTLSIANIIGFTKCRKDAKKQ 561
            A+P   FF  LF+ AA+A YIL   F D++V+  V  V+L A+DFW  +NVSGR LVGLR+WN++++ GES W FE  D    A  N  DS +FW  LY+  + W VL I SL++    ++ +V + L  +I N+IGFT   +DAK++
Sbjct:   86 AHPTALFFLYLFRIAAIAVYILCGWFTDNYVLSTVAVVVLLAMDFWNCRNVSGRTLVGLRFWNQVDEDGESYWVFESRDPSRPA--NPIDSKMFWIALYVFPLLWSVLLIVSLLKLGFAFIPIVVLALVFNITNVIGFTYADRDAKQK 231          
BLAST of FC930083 vs. ExPASy Swiss-Prot
Match: TVP23_ASPNC (Golgi apparatus membrane protein tvp23 OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513) GN=tvp23 PE=3 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.243e-27
Identity = 63/167 (37.72%), Postives = 99/167 (59.28%), Query Frame = 1
Query:  118 ANPKTCFFHVLFKGAALAFYILSALFFDSFVIIFVVTVLLAALDFWVVKNVSGRILVGLRWWNEIN-DMGESVWKFECLDHESMARMNKKDSWLFWWTLYLSAVAWIVLGIFSLIRFQA-DYLLVVGVCLTLSIANIIGFTKCRKDAKKQIQQFASQTIASGFTSTL 612
            A+P T  F + F+  AL  Y+   LF  +FV++F++T+L+ + DF+ +KN++GR LVGLRWWNE+N   G+S W FE  D  +   +   D   FW +LY++   WI L I ++IR  +  +L +V + L L+I N + F++C  D   Q   FA+  ++ G  S L
Sbjct:   19 AHPITLLFFLGFRIGALLMYLFGVLFIKNFVLVFIITLLILSADFYYLKNIAGRRLVGLRWWNEVNTSSGDSTWVFESSD-PTTRTITATDKRFFWLSLYVTPALWIGLAILAIIRLSSVIWLSLVAIALALTITNTVAFSRC--DRFSQASTFANSALSGGVMSNL 182          
BLAST of FC930083 vs. ExPASy Swiss-Prot
Match: FA18B_BOVIN (Protein FAM18B OS=Bos taurus GN=FAM18B PE=2 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 1.623e-27
Identity = 59/171 (34.50%), Postives = 96/171 (56.14%), Query Frame = 1
Query:   94 NQPPGENYANPKTCFFHVLFKGAALAFYILSALFFDSFVIIFVVTVLLAALDFWVVKNVSGRILVGLRWWNEINDMGESVWKFEC--LDHESMARMNKKDSWLFWWTLYLSAVAWIVLGIFSLIRFQADYLLVVGVCLTLSIANIIGFTKCRKDAKKQIQQFASQTIASGF 600
            N+P      +P   FFH+ F+ +A+  Y+L  LF  SF+   V  +LL + DFW VKNV+GR++VGLRWWN I++ G+S W FE      +    +++ +S +FW  L    V W+V    +L  F+  +L VV + + L  AN+ G+ +C+  ++K +   A+  +   F
Sbjct:   24 NRPKKSRIRHPVASFFHLFFRVSAIIVYLLCELFSSSFIACMVTIILLLSCDFWAVKNVTGRLMVGLRWWNHIDEDGKSHWVFESRKASPQEGKTVSEAESRIFWLGLVACPVLWVVFAFSALFSFRVKWLAVVIMGVVLQGANLYGYIRCKVGSRKNLTSMATTYLGRQF 194          
BLAST of FC930083 vs. ExPASy Swiss-Prot
Match: FA18B_MOUSE (Protein FAM18B OS=Mus musculus GN=Fam18b PE=1 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 2.769e-27
Identity = 61/173 (35.26%), Postives = 96/173 (55.49%), Query Frame = 1
Query:   94 NQPPGENYANPKTCFFHVLFKGAALAFYILSALFFDSFVIIFVVTVLLAALDFWVVKNVSGRILVGLRWWNEINDMGESVWKFECLDHESMARMNK----KDSWLFWWTLYLSAVAWIVLGIFSLIRFQADYLLVVGVCLTLSIANIIGFTKCRKDAKKQIQQFASQTIASGF 600
            N+P      +P   FFH+ F+ +A+  Y+L  L   SF+   V  +LL + DFW VKNV+GR++VGLRWWN I++ G+S W FE    +S  + NK     +S +FW  L    V W++    +L  F+  +L VV + + L  AN+ G+ +C+  +KK +   A+  +   F
Sbjct:   24 NRPRKSKIRHPVASFFHLFFRVSAVVVYLLCELLSSSFIACMVTIILLLSCDFWAVKNVTGRLMVGLRWWNHIDEDGKSHWVFE--SRKSTPQDNKTISEAESRIFWLGLIACPVLWVIFAFSALFSFRVKWLAVVIMGVVLQGANLYGYIRCKVGSKKNLTSMATSYLGKQF 194          
The following BLAST results are available for this feature:
BLAST of FC930083 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 38
Match NameE-valueIdentityDescription
FA18_ARATH4.062e-8787.43Uncharacterized FAM18-like protein At1g09330 OS=Ar... [more]
FA18_DROME6.805e-3440.96Uncharacterized FAM18-like protein CG5021 OS=Droso... [more]
TVP23_SCHPO1.419e-3143.11Golgi apparatus membrane protein tvp23 OS=Schizosa... [more]
FA18A_DICDI5.392e-3140.61Uncharacterized FAM18-like protein 1 OS=Dictyostel... [more]
TVP23_YARLI7.786e-3041.78Golgi apparatus membrane protein TVP23 OS=Yarrowia... [more]
TVP23_COCIM1.328e-2940.12Golgi apparatus membrane protein TVP23 OS=Coccidio... [more]
TVP23_LACBS1.468e-2844.59Golgi apparatus membrane protein TVP23 OS=Laccaria... [more]
TVP23_ASPNC1.243e-2737.72Golgi apparatus membrane protein tvp23 OS=Aspergil... [more]
FA18B_BOVIN1.623e-2734.50Protein FAM18B OS=Bos taurus GN=FAM18B PE=2 SV=1[more]
FA18B_MOUSE2.769e-2735.26Protein FAM18B OS=Mus musculus GN=Fam18b PE=1 SV=1[more]

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Properties
Property NameValue
Genbank descriptionC34003F03EF PostHarvC1 Citrus clementina cDNA clone C34003F03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930083 ID=FC930083; Name=FC930083; organism=Citrus clementina; type=EST; length=685bp
GCCGAGAAATATTTCGCCTGAAAATTTCTCGACTCTCAAAATTAAACCCC
AACAAGATTTAAATTGCGAAAATAGATTCGCGTAATGGATCTCAATCAGC
CTCCTGGTGAAAATTATGCGAACCCAAAGACATGCTTCTTTCATGTTCTC
TTCAAGGGTGCAGCTTTGGCATTTTACATACTTTCTGCCCTCTTTTTCGA
CAGCTTTGTCATCATTTTTGTGGTGACTGTCCTTCTTGCTGCTCTTGATT
TTTGGGTAGTCAAGAATGTTAGTGGGCGTATATTAGTTGGTTTGAGGTGG
TGGAATGAAATAAATGATATGGGTGAGAGTGTGTGGAAGTTTGAGTGCCT
TGACCATGAGTCCATGGCTCGCATGAACAAGAAAGATTCGTGGCTATTCT
GGTGGACCCTTTACCTTTCGGCTGTTGCTTGGATTGTGCTTGGGATATTT
TCTCTCATTAGGTTCCAAGCTGATTATCTCCTGGTTGTTGGTGTCTGTTT
GACCCTCAGCATTGCAAACATTATTGGTTTTACCAAATGCCGAAAAGATG
CTAAGAAGCAGATCCAACAATTTGCCTCCCAGACCATCGCATCCGGATTC
ACATCTACCCTACAGTCAGCTTTCAGTGTTGTCTGATTCAGTTAGAGAAG
CTGGGTGTAAGGTGGACCAGTAAACTTGCTCGTGG
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