FC930088

Overview
NameFC930088
Unique NameFC930088
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length711
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930088 vs. ExPASy Swiss-Prot
Match: MOMAS_ORYSJ (Momilactone A synthase OS=Oryza sativa subsp. japonica GN=Os04g0179200 PE=2 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.160e-23
Identity = 64/170 (37.65%), Postives = 91/170 (53.53%), Query Frame = 1
Query:  145 RLQGRVXXXXXXXXXXXXXXXQLFHKNGAKVVIADVQDNLGQALADKLGNQDVCYIHCDVSNEREVINLVDTTVAKFGKLDILVNTGCNLEYRGFVSILDTPKSDLEHLLAVNTIGGFLVAKHAARVMVPRRRGCILYTTGTGTTACAEIEGFCNIPANYYGVSKFGILG 654
            +L G+V               +LF K+GA+VV+AD+QD LG +L  +LG     Y+HCDV+NE +V   VD  VA+FGKLD++ N    +       + +  K D E +LAVN +G FL  KHAARVM P RRG I+ T    ++            ++ Y  SK  ++G
Sbjct:   14 KLVGKVAVITGGASGIGACTARLFVKHGARVVVADIQDELGASLVAELGPDASSYVHCDVTNEGDVAAAVDHAVARFGKLDVMFN-NAGVSGPPCFRMSECTKEDFERVLAVNLVGPFLGTKHAARVMAPARRGSIISTASLSSSV-------SGAASHAYTTSKHALVG 175          
BLAST of FC930088 vs. ExPASy Swiss-Prot
Match: TS2_MAIZE (Sex determination protein tasselseed-2 OS=Zea mays GN=TS2 PE=2 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.242e-17
Identity = 64/176 (36.36%), Postives = 91/176 (51.70%), Query Frame = 1
Query:  145 RLQGRVXXXXXXXXXXXXXXXQLFHKNGAKVVIADVQDNLGQALADKLGNQDVCYIHCDVSNEREVINLVDTTVAKF-GKLDILVNTGCNL--EYRGFVSILDTPKSDLEHLLAVNTIGGFLVAKHAARVMVPRRRGCILYTTGTGTTACAEIEGFCNIPANYYGVSKFGILGLVR 663
            RL G+V               +LF K+GA+VVIAD+ D  G+ALA  LG Q V ++ CDVS E +V   VD  +++  G+LD+  N    L  + R   SIL    ++ + +L VN +G  L  KHAAR M PRR G I+        + A + G   +  + Y  SK  I+GL +
Sbjct:   52 RLDGKVAIVTGGARGIGEAIVRLFAKHGARVVIADIDDAAGEALASALGPQ-VSFVRCDVSVEDDVRRAVDWALSRHGGRLDVYCNNAGVLGRQTRAARSILSFDAAEFDRVLRVNALGAALGMKHAARAMAPRRAGSIV-----SVASVAAVLG--GLGPHAYTASKHAIVGLTK 219          
BLAST of FC930088 vs. ExPASy Swiss-Prot
Match: ABA2_ARATH (Xanthoxin dehydrogenase OS=Arabidopsis thaliana GN=ABA2 PE=1 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 4.720e-17
Identity = 66/180 (36.67%), Postives = 87/180 (48.33%), Query Frame = 1
Query:  139 SIRLQGRVXXXXXXXXXXXXXXXQLFHKNGAKVVIADVQDNLGQALADKL----GNQDVCYIHCDVSNEREVINLVDTTVAKFGKLDILVNTGCNLEYRGFVSILDTPKSDLEHLLAVNTIGGFLVAKHAARVMVPRRRGCILYTTGTGTTACAEIEGFCNIPANYYGVSKFGILGLVRA 666
            S RL G+V               +LFHK+GAKV I D+QD+LG  +   L      +   +IH DV  E ++ N VD  V  FG LDIL+N    L       I +   S+ E    VN  G FL  KHAARVM+P ++G I+     G      + G    P +Y G SK  +LGL R+
Sbjct:   15 SQRLLGKVALITGGATGIGESIVRLFHKHGAKVCIVDLQDDLGGEVCKSLLRGESKETAFFIHGDVRVEDDISNAVDFAVKNFGTLDILINNA-GLCGAPCPDIRNYSLSEFEMTFDVNVKGAFLSMKHAARVMIPEKKGSIVSLCSVG----GVVGGVG--PHSYVG-SKHAVLGLTRS 186          
BLAST of FC930088 vs. ExPASy Swiss-Prot
Match: BACC2_BACSU (Bacilysin biosynthesis oxidoreductase bacC OS=Bacillus subtilis GN=bacC PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.135e-13
Identity = 50/153 (32.68%), Postives = 79/153 (51.63%), Query Frame = 1
Query:  208 QLFHKNGAKVVIADVQDNLGQALADKLGNQDVCYIHCDVSNEREVINLVDTTVAKFGKLDILVNTGCNLEYRGFVSILDTPKSDLEHLLAVNTIGGFLVAKHAARVMVPRRRGCILYTTGTGTTACAEIEGFCNIPANYYGVSKFGILGLVRA 666
            Q F    A VV+AD+ +  G+A+  K  N  + ++H D+++E    N + + V KFG LD+L+N   N        I +   S+   +L VN  G FL++KHA + M+   +G I+ T   G      +  + +IPA  Y  SK G+L L R+
Sbjct:   23 QAFLNQQANVVVADIDEAQGEAMIRKENNDRLHFVHTDITDEPACQNAIRSAVDKFGGLDVLIN---NAGIEIVAPIHEMELSNWNKVLNVNLTGMFLMSKHALKYMLKSGKGNIINTCSVG-----GVVAWPDIPA--YNASKGGVLQLTRS 165          
BLAST of FC930088 vs. ExPASy Swiss-Prot
Match: BACC_BACAM (Bacilysin biosynthesis oxidoreductase bacC OS=Bacillus amyloliquefaciens GN=bacC PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.500e-12
Identity = 49/148 (33.11%), Postives = 75/148 (50.68%), Query Frame = 1
Query:  208 QLFHKNGAKVVIADVQDNLGQALADKLGNQDVCYIHCDVSNEREVINLVDTTVAKFGKLDILVNTGCNLEYRGFVSILDTPKSDLEHLLAVNTIGGFLVAKHAARVMVPRRRGCILYTTGTGTTACAEIEGFCNIPANYYGVSKFGIL 651
            Q F    A VV+AD+ +  G+A+  K  N  + ++  D++NE    N + + V KFG LD+L+N   N        I +   SD   +L VN  G FL++KHA + M+   +G I+ T   G      +  + +IPA  Y  SK G+L
Sbjct:   23 QAFLNQQANVVVADIDEAQGEAMIRKENNDRLHFVQTDITNEPACQNAILSAVDKFGGLDVLIN---NAGIEIVAPIHEMELSDWNKVLNVNLTGMFLMSKHALKYMLKSGKGNIINTCSVG-----GVVAWPDIPA--YNASKGGVL 160          
BLAST of FC930088 vs. ExPASy Swiss-Prot
Match: Y019_THEMA (Uncharacterized oxidoreductase TM_0019 OS=Thermotoga maritima GN=TM_0019 PE=3 SV=2)

HSP 1 Score: 71.633 bits (174), Expect = 4.571e-12
Identity = 50/176 (28.41%), Postives = 83/176 (47.16%), Query Frame = 1
Query:  148 LQGRVXXXXXXXXXXXXXXXQLFHKNGAKVVIADVQDNLGQALADKLGNQ--DVCYIHCDVSNEREVINLVDTTVAKFGKLDILVNTGCNLEYRGFVSILDTPKSDLEHLLAVNTIGGFLVAKHAARVMVPRRRGCILYTTGTGTTACAEIEGFCNIP-ANYYGVSKFGILGLVRA 666
            L+G+V               QLF +NG KVVIA++ +  G    + L  +  DV ++  DV++E  V N+V  TV  +G +D+LVN    +  +   SI + P  + E ++ VN  G ++ +++ A  M+ R  G I+    T          F + P    Y  SK G++ L  +
Sbjct:    2 LEGKVAVVTGGGQGIGAAIAQLFAENGMKVVIAEIDEEAGVEREEMLRERGLDVTFVKTDVADENSVKNMVRKTVEIYGGVDVLVNNAAVMSVK---SIFERPLEEWERVIRVNLTGPYICSRYCAEEMIKRGGGVIINIAST--------RAFQSEPDTEPYSASKGGLVALTHS 166          
BLAST of FC930088 vs. ExPASy Swiss-Prot
Match: BACC_BACSU (Bacilysin biosynthesis oxidoreductase bacC OS=Bacillus subtilis GN=bacC PE=3 SV=2)

HSP 1 Score: 69.707 bits (169), Expect = 1.737e-11
Identity = 48/153 (31.37%), Postives = 78/153 (50.98%), Query Frame = 1
Query:  208 QLFHKNGAKVVIADVQDNLGQALADKLGNQDVCYIHCDVSNEREVINLVDTTVAKFGKLDILVNTGCNLEYRGFVSILDTPKSDLEHLLAVNTIGGFLVAKHAARVMVPRRRGCILYTTGTGTTACAEIEGFCNIPANYYGVSKFGILGLVRA 666
            Q F    A VV+AD+ +  G+A+  K  N  + ++  D+++E    + V++ V  FG LD+L+N   N        I +   SD   +L VN  G FL++KHA + M+   +G I+ T   G      +  + +IPA  Y  SK G+L L ++
Sbjct:   23 QAFLGQQANVVVADIDEAQGEAMVRKENNDRLHFVQTDITDEAACQHAVESAVHTFGGLDVLIN---NAGIEIVAPIHEMELSDWNKVLQVNLTGMFLMSKHALKHMLAAGKGNIINTCSVG-----GLVAWPDIPA--YNASKGGVLQLTKS 165          
The following BLAST results are available for this feature:
BLAST of FC930088 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
MOMAS_ORYSJ1.160e-2337.65Momilactone A synthase OS=Oryza sativa subsp. japo... [more]
TS2_MAIZE1.242e-1736.36Sex determination protein tasselseed-2 OS=Zea mays... [more]
ABA2_ARATH4.720e-1736.67Xanthoxin dehydrogenase OS=Arabidopsis thaliana GN... [more]
BACC2_BACSU4.135e-1332.68Bacilysin biosynthesis oxidoreductase bacC OS=Baci... [more]
BACC_BACAM3.500e-1233.11Bacilysin biosynthesis oxidoreductase bacC OS=Baci... [more]
Y019_THEMA4.571e-1228.41Uncharacterized oxidoreductase TM_0019 OS=Thermoto... [more]
BACC_BACSU1.737e-1131.37Bacilysin biosynthesis oxidoreductase bacC OS=Baci... [more]
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Properties
Property NameValue
Genbank descriptionC34003F08EF PostHarvC1 Citrus clementina cDNA clone C34003F08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930088 ID=FC930088; Name=FC930088; organism=Citrus clementina; type=EST; length=711bp
AACTGCCAAGAGAAGGAAATAATCACAAGCCAAACCTTGTATTTTAACAA
TCTTGATTGAGTTTCAGGTTTTTGAGGAAATTTTTTCACACAGGCTTGTA
GTACTACTGCAGCAGCACCCTGCGAAAGGTGTCAACTCAGCATTCGGTTA
CAAGGCAGAGTGGCAATCATTACTGGCGGAGCAAGCGGGATCGGAGCATC
TGCGGCTCAGCTTTTCCACAAAAATGGAGCCAAAGTTGTCATAGCCGATG
TGCAAGATAATCTTGGCCAAGCCCTAGCCGATAAGCTAGGCAACCAGGAT
GTCTGCTACATCCATTGTGATGTATCAAATGAAAGGGAAGTCATCAATCT
TGTTGATACCACCGTTGCTAAATTCGGAAAGCTCGACATCCTGGTCAATA
CCGGATGCAATCTTGAGTATCGTGGTTTCGTGAGCATTTTGGACACCCCA
AAGTCTGATCTAGAACATTTACTGGCTGTGAACACAATTGGTGGTTTCTT
AGTAGCCAAGCATGCTGCAAGAGTCATGGTGCCACGCCGCAGAGGTTGCA
TATTGTATACAACGGGTACGGGCACTACTGCTTGTGCGGAAATTGAAGGT
TTCTGCAATATTCCAGCTAATTATTATGGAGTGTCAAAATTTGGTATCTT
GGGACTTGTCAGGGCTTAGCGCAGAGCTTGGACGGTATGGAATAGAGTAG
ATGCGTATCGC
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