FC930090

Overview
NameFC930090
Unique NameFC930090
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length689
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC930090_ssr675 microsatellite FC930090_ssr675:675..684. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig5043 contig Ccv1_Contig5043:159..847. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC930090 vs. ExPASy Swiss-Prot
Match: AB20I_ARATH (ABC transporter I family member 20 OS=Arabidopsis thaliana GN=ABCI20 PE=2 SV=1)

HSP 1 Score: 335.88 bits (860), Expect = 1.231e-91
Identity = 165/201 (82.09%), Postives = 178/201 (88.56%), Query Frame = 1
Query:   40 GKTTILKIIGGKHMVEPEMVKALGRSAFHDTALTSSGDLSYLGGEWRREVAFAGFEVPIQLDVSAEKMIFGVAGIDPQRRAELIKVLDINLSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITXXXXXXXXXXXXXXXXKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKEASKLSLMRTVESWL 642
            GKTTILKI+GGKHMVEP MV+ LGRSAFHDT LTSSGDL YLGGEWRR+VAFAGFEVPIQ+D+SAEKMIFGVAGIDPQRR ELIKVLDI++SWR+HKVSDGQRRRVQICMGLLKPFKVLLLDEIT                KECEERGATIIYATHIFDGLE+WP+HIVYVA+GKLQLA+PM+KVKE SK SLMRTVESWL
Sbjct:   60 GKTTILKILGGKHMVEPHMVRVLGRSAFHDTGLTSSGDLCYLGGEWRRDVAFAGFEVPIQMDISAEKMIFGVAGIDPQRRDELIKVLDIDISWRLHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLKFLRKECEERGATIIYATHIFDGLEDWPTHIVYVANGKLQLALPMEKVKETSKKSLMRTVESWL 260          
BLAST of FC930090 vs. ExPASy Swiss-Prot
Match: AB21I_ARATH (ABC transporter I family member 21 OS=Arabidopsis thaliana GN=ABCI21 PE=2 SV=1)

HSP 1 Score: 238.81 bits (608), Expect = 2.048e-62
Identity = 121/204 (59.31%), Postives = 150/204 (73.53%), Query Frame = 1
Query:   37 TGKTTILKIIGGKHMVEPE-MVKALGRSAFHDTALTSSGDLSYLGGEWRREVAFAGFEVPIQLDVSAEKMIFGVAGIDPQRRAELIKVLDINLSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITXXXXXXXXXXXXXXXXKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKE-ASKLSLMRTVESWL 642
            +GKTT+LKI+ GKHMV  + +V+ L RSAFHDT L  SGDLSYLGG W +    AG ++P+Q D SAE MIFGV GIDP RR +LI +LDINL WRMHKVSDGQRRRVQICMGLL PFKVLLLDE+T                +ECE+RGATI+YATHIFDGLE W SH+ Y+  G+L+L+  +D++K+  +  +L+  VE+WL
Sbjct:   50 SGKTTLLKILAGKHMVGGKNVVQVLDRSAFHDTELVCSGDLSYLGGSWSKTAGSAG-DIPLQGDFSAEHMIFGVEGIDPFRREKLIDLLDINLQWRMHKVSDGQRRRVQICMGLLHPFKVLLLDEVTVDLDVVARMDLLEFFKEECEQRGATIVYATHIFDGLETWASHLAYINGGELKLSAKLDEIKDLKTSPNLLSVVEAWL 252          
BLAST of FC930090 vs. ExPASy Swiss-Prot
Match: AB19I_ARATH (ABC transporter I family member 19 OS=Arabidopsis thaliana GN=ABCI19 PE=2 SV=1)

HSP 1 Score: 233.032 bits (593), Expect = 1.124e-60
Identity = 120/204 (58.82%), Postives = 145/204 (71.08%), Query Frame = 1
Query:   37 TGKTTILKIIGGKHMVEPE-MVKALGRSAFHDTALTSSGDLSYLGGEWRREVAFAGFEVPIQLDVSAEKMIFGVAGIDPQRRAELIKVLDINLSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITXXXXXXXXXXXXXXXXKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKE-ASKLSLMRTVESWL 642
            +GKTT+LKI+ GKHMV  + +V+ L RSAFHDT L  SGDLSYLGG W + V  AG EVP+Q D SAE MIFGV G DP RR +LI +LDINL WRMHKVSDGQ+RRVQICMGLL PFKVLLLDE+T                +EC++RGATI+YATHIFDGLE W +H+ Y+  G+L     M  ++E  +  +L+  VESWL
Sbjct:   51 SGKTTLLKILAGKHMVGGKNVVQVLSRSAFHDTQLVCSGDLSYLGGSWSKTVGSAG-EVPLQGDFSAEHMIFGVEGTDPVRREKLIDLLDINLQWRMHKVSDGQKRRVQICMGLLHPFKVLLLDEVTVDLDVVARMDLLEFFKEECDQRGATIVYATHIFDGLETWATHLAYIQDGELNRLSKMTDIEELKTSPNLLSVVESWL 253          
BLAST of FC930090 vs. ExPASy Swiss-Prot
Match: YE31_SCHPO (Uncharacterized ABC transporter ATP-binding protein C20G4.01 OS=Schizosaccharomyces pombe GN=SPAC20G4.01 PE=4 SV=2)

HSP 1 Score: 144.821 bits (364), Expect = 4.024e-34
Identity = 83/208 (39.90%), Postives = 115/208 (55.29%), Query Frame = 1
Query:   40 GKTTILKIIGGKHMVEPEMVKALGRSAFHDTALTSSGDLSYLGGEWRREVAFAGFEVPIQLDVSAEKMIFGVAGID-PQRRAELIKVLDINLSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITXXXXXXXXXXXXXXXXKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKV------KEASKLSLMRTVESWL 642
            GK+T+LK++ GK + +   +   G+  F +    SS    YLG EW            I  D+S  ++I  V G    +RR  LI +LDI+L WRMH VSDG+RRRVQ+CMGLL+PF+VLLLDE+T                +E E R ATI+YATHIFDGL  WP+H+V+++ G++    P+ K             +L+ T   WL
Sbjct:   42 GKSTLLKLLSGKSLAKAGHISVGGKDPFRE----SSSAFVYLGTEWVNNPV-------IHRDMSVARLIASVGGDKFAERRDFLISILDIDLRWRMHAVSDGERRRVQLCMGLLRPFEVLLLDEVTVDLDVLARADLLNFLQEETEVRNATIVYATHIFDGLAEWPTHLVHLSLGRIVDYGPISKFGALMTRSSTGNSALLETCLEWL 238          
BLAST of FC930090 vs. ExPASy Swiss-Prot
Match: CAF16_YEAST (CCR4-associated factor 16 OS=Saccharomyces cerevisiae GN=CAF16 PE=1 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 4.033e-26
Identity = 69/205 (33.66%), Postives = 107/205 (52.20%), Query Frame = 1
Query:   40 GKTTILKIIGGKHMVEPEMVKALGRSAFHDTALTSSGD------------LSYLGGEWRREVAFAGFEVPIQLDVSAEKMIFGVAGIDP--QRRAELIKVLDINLSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITXXXXXXXXXXXXXXXXKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKEASKL 612
            GK+T+LK++ GKH+     +   G   F   ++    D             +YLG EW            I  D+   +++  + G D   +R   L+++LDI++ WRMH++SDGQ+RRVQ+ MGLLKP++VLLLDE+T                 E E R  +++YATHIFDGL  WP+ + ++  GK+   +   K  E S++
Sbjct:   46 GKSTLLKLLSGKHLCLDGKILVNGLDPFSPLSMNQVDDDESVEDSTNYQTTTYLGTEWCHMSI-------INRDIGVLELLKSI-GFDHFRERGERLVRILDIDVRWRMHRLSDGQKRRVQLAMGLLKPWRVLLLDEVTVDLDVIARARLLEFLKWETETRRCSVVYATHIFDGLAKWPNQVYHMKSGKIVDNLDYQKDVEFSEV 242          
The following BLAST results are available for this feature:
BLAST of FC930090 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
AB20I_ARATH1.231e-9182.09ABC transporter I family member 20 OS=Arabidopsis ... [more]
AB21I_ARATH2.048e-6259.31ABC transporter I family member 21 OS=Arabidopsis ... [more]
AB19I_ARATH1.124e-6058.82ABC transporter I family member 19 OS=Arabidopsis ... [more]
YE31_SCHPO4.024e-3439.90Uncharacterized ABC transporter ATP-binding protei... [more]
CAF16_YEAST4.033e-2633.66CCR4-associated factor 16 OS=Saccharomyces cerevis... [more]
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Properties
Property NameValue
Genbank descriptionC34003F10EF PostHarvC1 Citrus clementina cDNA clone C34003F10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930090 ID=FC930090; Name=FC930090; organism=Citrus clementina; type=EST; length=689bp
GAAAAAAATGATAATTATTTATTTAATCGATTAAATACAGGAAAAACAAC
GATATTAAAGATAATTGGAGGGAAGCACATGGTAGAACCAGAAATGGTGA
AAGCACTGGGAAGGTCTGCTTTCCACGACACCGCTTTGACTTCGTCTGGT
GATCTCTCCTATCTTGGAGGAGAGTGGAGGCGAGAGGTTGCATTTGCTGG
GTTTGAGGTTCCGATTCAACTGGATGTGTCAGCGGAGAAAATGATTTTTG
GAGTTGCAGGAATTGATCCACAGAGAAGAGCTGAACTGATCAAGGTGTTA
GACATTAATCTATCATGGAGGATGCACAAGGTGTCTGATGGTCAGAGAAG
ACGTGTTCAAATTTGCATGGGCCTCCTCAAGCCATTCAAGGTTCTTCTTC
TGGATGAGATAACTGTTGATCTTGATGTGCTAGCAAGAGCTGACCTCCTC
AGGTTTCTGAGAAAAGAATGTGAAGAGCGCGGTGCCACAATTATCTACGC
AACCCACATATTTGATGGTCTGGAGAACTGGCCATCACATATTGTGTATG
TAGCTCATGGGAAGTTGCAATTAGCAATGCCGATGGATAAAGTTAAGGAG
GCTAGCAAGTTGTCACTAATGAGAACAGTGGAGAGTTGGCTGAGGAAGGA
AAGAGATGAGGAAAGGAAGAGAAGGAGAGAGAGAAGGGC
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