FC930094

Overview
NameFC930094
Unique NameFC930094
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length678
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15202 contig Ccv1_Contig15202:479..1156. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC930094 vs. ExPASy Swiss-Prot
Match: U183_ARATH (UPF0183 protein At3g51130 OS=Arabidopsis thaliana GN=At3g51130 PE=2 SV=2)

HSP 1 Score: 356.681 bits (914), Expect = 6.506e-98
Identity = 159/195 (81.54%), Postives = 175/195 (89.74%), Query Frame = 3
Query:    3 GVYDKEISVYMLFYPGLSFAFPIPAQYADCCQDREAELPLEFPDGTTPVTCRVSIYDGSADKKVGVGSLFDKAIAPSLPIGSLYMEEVHAKLGEELHFTVGSQHIPFGASPQDVWTELGRPCGIHQKQVDQMVIHSASDPRPRSTLCGDYFYNYYTRGLDILFDGQTHKIKKFIMHTNYPGHADFNSYIKCNFII 587
            G+YDKE  +Y LFYPGLSF FPIP QY DCC D EA LPLEFPDGTTPVTCRVSIYD S+DKKVGVG L D+A  P LP GSLYMEEVH K G+EL+FTVG QH+PFGASPQDVWTELGRPCGIH KQVDQMVIHSASDPRP++T+CGDYFYNY+TRGLDILFDG+THK+KKF++HTNYPGHADFNSYIKCNF+I
Sbjct:  140 GIYDKERGIYSLFYPGLSFEFPIPNQYTDCCHDGEAALPLEFPDGTTPVTCRVSIYDNSSDKKVGVGKLMDRASVPPLPPGSLYMEEVHVKPGKELYFTVGGQHMPFGASPQDVWTELGRPCGIHPKQVDQMVIHSASDPRPKTTICGDYFYNYFTRGLDILFDGETHKVKKFVLHTNYPGHADFNSYIKCNFVI 334          
BLAST of FC930094 vs. ExPASy Swiss-Prot
Match: U183_DROME (UPF0183 protein CG7083 OS=Drosophila melanogaster GN=CG7083 PE=2 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.133e-25
Identity = 80/224 (35.71%), Postives = 113/224 (50.45%), Query Frame = 3
Query:    3 GVYDKEISVYMLFYPGLSFAFPIPAQ----YADCCQDREAELPLEFPDGTTPVTCRVSIYDGSADKKVGVGSLFDKAIAPSLPIG----SLYMEEV--------HAKLGEELHFTVGS------------QHIPFGASPQDVWTELGRPCGIHQKQVDQMVIHSASDPRPRSTLCGDYFYNYYTRGLDILFDGQTHKIKKFIMHTNYPGHADFNSYIKCNFIIL 590
            GVYD    ++ L + GLSF FP+ ++    YA           L F +G +PV  ++S+Y GS        ++ +  + PSLP+      +Y+E          H K  +   FT GS            + + FG S +DV T LG P  I  K  D+M IHS+S  R   +   D F+NY+T G+D+LFD +T   KKFI+HTNYPGH +FN Y +C F  L
Sbjct:  118 GVYDAAKQLFALHFRGLSFYFPVDSKLHSGYAHGLSS------LVFLNGASPVVSKMSLYAGS--------NVLENRV-PSLPLSCYHRQMYLESATVLRTAFGHTKGLKLKLFTEGSGRALEPRRQCFTRELLFGDSCEDVATSLGAPNRIFFKSEDKMKIHSSSVNRQAQSKRSDIFFNYFTLGIDVLFDARTQTCKKFILHTNYPGHFNFNMYHRCEFQFL 326          
BLAST of FC930094 vs. ExPASy Swiss-Prot
Match: CP070_HUMAN (UPF0183 protein C16orf70 OS=Homo sapiens GN=C16orf70 PE=1 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 2.791e-24
Identity = 79/223 (35.43%), Postives = 110/223 (49.33%), Query Frame = 3
Query:    3 GVYDKEISVYMLFYPGLSFAFPIPA-QYADCCQDREAE--LPLEFPDGTTPVTCRVSIYDGSADKKVGVGSLFDKAIAPSLPI----GSLYMEEVHAK---------------------LGEELHFTVGSQHIPFGASPQDVWTELGRPCGIHQKQVDQMVIHSASDPRPRSTLCGDYFYNYYTRGLDILFDGQTHKIKKFIMHTNYPGHADFNSYIKCNFII 587
            GVY+    ++ L + GLSF+F + +   A   +   A     L+ P G T    R+ IY G+        SL D   AP +P+    G++Y E V                        L  +    V  + + FG S QDV + LG P  +  K  D+M IHS S  +   + C DYF+NY+T G+DILFD  THK+KKF++HTNYPGH +FN Y +C F I
Sbjct:  118 GVYNSAEQLFHLNFRGLSFSFQLDSWTEAPKYEPNFAHGLASLQIPHGAT--VKRMYIYSGN--------SLQDTK-APMMPLSCFLGNVYAESVDVLRDGTGPAGLRLRLLAAGCGPGLLADAKMRVFERSVYFGDSCQDVLSMLGSPHKVFYKSEDKMKIHSPSPHKQVPSKCNDYFFNYFTLGVDILFDANTHKVKKFVLHTNYPGHYNFNIYHRCEFKI 329          
BLAST of FC930094 vs. ExPASy Swiss-Prot
Match: CP070_RAT (UPF0183 protein C16orf70 homolog OS=Rattus norvegicus PE=2 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 6.217e-24
Identity = 80/223 (35.87%), Postives = 111/223 (49.78%), Query Frame = 3
Query:    3 GVYDKEISVYMLFYPGLSFAFPIPA-QYADCCQDREAE--LPLEFPDGTTPVTCRVSIYDGSADKKVGVGSLFDKAIAPSLPI----GSLYMEEVH-----------------AKLGE----ELHFTVGSQHIPFGASPQDVWTELGRPCGIHQKQVDQMVIHSASDPRPRSTLCGDYFYNYYTRGLDILFDGQTHKIKKFIMHTNYPGHADFNSYIKCNFII 587
            GVY+    ++ L + GLSF+F + +   A   +   A     L+ P G T    R+ IY G+        SL D   AP +P+    G++Y E V                  A  G     +    V  + + FG S QDV + LG P  +  K  D+M IHS S  +   + C DYF+NY+T G+DILFD  THK+KKF++HTNYPGH +FN Y +C F I
Sbjct:  118 GVYNSAEQLFHLNFRGLSFSFQLDSWTEAPKYEPNFAHGLASLQIPHGAT--VKRMYIYSGN--------SLQDTK-APMMPLSCFLGNVYAESVDVIRDGTGPSGLRLRLLAAGCGPGVLADAKMRVFERAVYFGDSCQDVLSMLGSPHKVFYKSEDKMKIHSPSPHKQVPSKCNDYFFNYFTLGVDILFDANTHKVKKFVLHTNYPGHYNFNIYHRCEFKI 329          
BLAST of FC930094 vs. ExPASy Swiss-Prot
Match: CP070_MOUSE (UPF0183 protein C16orf70 homolog OS=Mus musculus PE=2 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 8.120e-24
Identity = 79/221 (35.75%), Postives = 110/221 (49.77%), Query Frame = 3
Query:    3 GVYDKEISVYMLFYPGLSFAFPIPA-QYADCCQDREAE--LPLEFPDGTTPVTCRVSIYDGSA--DKKVGVGSLFDKAIAPSLPIGSLYMEEVH-----------------AKLGE----ELHFTVGSQHIPFGASPQDVWTELGRPCGIHQKQVDQMVIHSASDPRPRSTLCGDYFYNYYTRGLDILFDGQTHKIKKFIMHTNYPGHADFNSYIKCNFII 587
            GVY+    ++ L + GLSF+F + +   A   +   A     L+ P G T    R+ IY G++  D K  V  L       S  +G++Y E V                  A  G     +    V  + + FG S QDV + LG P  +  K  D+M IHS S  +   + C DYF+NY+T G+DILFD  THK+KKF++HTNYPGH +FN Y +C F I
Sbjct:  118 GVYNSTEQLFHLNFRGLSFSFQLDSWTEAPKYEPNFAHGLASLQIPHGAT--VKRMYIYSGNSLQDTKAPVMPL-------SCFLGNVYAESVDVLRDGTGPSGLRLRLLAAGCGPGVLADAKMRVFERAVYFGDSCQDVLSMLGSPHKVFYKSEDKMKIHSPSPHKQVPSKCNDYFFNYFTLGVDILFDANTHKVKKFVLHTNYPGHYNFNIYHRCEFKI 329          
BLAST of FC930094 vs. ExPASy Swiss-Prot
Match: U183_CAEEL (UPF0183 protein T01G9.2 OS=Caenorhabditis elegans GN=T01G9.2 PE=1 SV=3)

HSP 1 Score: 88.9669 bits (219), Expect = 2.530e-17
Identity = 66/223 (29.60%), Postives = 107/223 (47.98%), Query Frame = 3
Query:    3 GVYDKEISVYMLFYPGLSFAFPIPAQYADCCQDREAE----LPLEFPDGTTPVTCRVSIYDG-------SADKKVGV--GSLFDKAIAPSLPIGSLYMEEVHAK------LGEELHFTVGSQHIPFGASPQDVWTELGRPCGIHQKQVDQMVIHSASDPRPRSTLCG--DYFYNYYTRGLDILFDGQTHKIKKFIMHTNYPGHADFNSYIKCNFIILGSDCKF 608
            G YD + ++Y+  +PGLSF FP   + ++  + R         L++   + P   ++SIY G       S D       G    + +      G++   ++         +  E   +  ++ I FG S  DV + LG P  +  K  D+M IH       + TL G  ++F+NY+  GLDILFD  + ++ KF++HTN PGH DF  Y +CNF I  +D ++
Sbjct:  136 GSYDDKHNIYVQSWPGLSFCFPYGGENSNL-EVRPGFGGNLRSLKYDANSQPKLTKMSIYRGPNPSEPESVDTPFSCYCGQNRTRKVEAIWENGNIVGIDIQFDTQNGRIVDGEYDVSTYTRQIYFGDSVSDVQSILGAPTKVFYKSDDKMKIHRGLH---KETLYGPPNFFFNYFVMGLDILFDFVSKRVVKFVLHTNAPGHCDFGMYSRCNFSIFLNDKQY 354          
The following BLAST results are available for this feature:
BLAST of FC930094 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
U183_ARATH6.506e-9881.54UPF0183 protein At3g51130 OS=Arabidopsis thaliana ... [more]
U183_DROME1.133e-2535.71UPF0183 protein CG7083 OS=Drosophila melanogaster ... [more]
CP070_HUMAN2.791e-2435.43UPF0183 protein C16orf70 OS=Homo sapiens GN=C16orf... [more]
CP070_RAT6.217e-2435.87UPF0183 protein C16orf70 homolog OS=Rattus norvegi... [more]
CP070_MOUSE8.120e-2435.75UPF0183 protein C16orf70 homolog OS=Mus musculus P... [more]
U183_CAEEL2.530e-1729.60UPF0183 protein T01G9.2 OS=Caenorhabditis elegans ... [more]
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Properties
Property NameValue
Genbank descriptionC34003G02EF PostHarvC1 Citrus clementina cDNA clone C34003G02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930094 ID=FC930094; Name=FC930094; organism=Citrus clementina; type=EST; length=678bp
CTGGAGTTTACGACAAAGAAATCAGTGTTTATATGCTATTCTACCCAGGG
CTGTCTTTTGCTTTTCCAATTCCAGCTCAGTATGCAGATTGCTGCCAGGA
TAGAGAAGCTGAACTGCCCTTAGAGTTTCCTGATGGCACTACGCCTGTTA
CATGCCGTGTCTCTATATATGATGGTTCTGCAGATAAAAAAGTTGGTGTT
GGATCGTTATTTGACAAGGCTATTGCTCCTTCGTTACCTATTGGAAGCTT
GTACATGGAAGAGGTGCATGCTAAGCTTGGAGAGGAATTACATTTTACTG
TTGGGAGCCAGCATATTCCTTTTGGCGCATCACCACAGGATGTGTGGACT
GAATTAGGCCGCCCTTGTGGAATACACCAAAAACAGGTAGACCAAATGGT
CATCCACTCTGCTTCTGATCCTCGACCACGATCAACACTCTGTGGTGATT
ACTTCTACAACTACTATACTCGTGGTTTGGACATCTTATTTGATGGCCAG
ACTCACAAGATCAAGAAGTTCATTATGCATACAAACTATCCTGGTCATGC
AGATTTCAATTCGTACATAAAGTGCAATTTTATTATCCTTGGTTCTGACT
GTAAGTTTTTTTCCTGCTGTAATATGGTTTTTAGTAGGGCTTTTCGTTTA
GATGATGAACTATTTCCTGTCTGCAGTT
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