FC930106

Overview
NameFC930106
Unique NameFC930106
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length731
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC930106_ssr112 microsatellite FC930106_ssr112:112..123. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig15103 contig Ccv1_Contig15103:1..731. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC930106 vs. ExPASy Swiss-Prot
Match: KASC1_ARATH (3-oxoacyl-[acyl-carrier-protein] synthase I, chloroplastic OS=Arabidopsis thaliana GN=KAS1 PE=2 SV=2)

HSP 1 Score: 230.335 bits (586), Expect = 8.065e-60
Identity = 124/161 (77.02%), Postives = 134/161 (83.23%), Query Frame = 2
Query:  161 MQSLQSSSLHASPLNPLRSKSN---FNLPNNARPTARRV-SFITAS-STKSAPKREKDPKKRVVITGMGLVSVFGNDVDAYYNKLLDGESGITMIDRFDASKFPTRFGGQIRGFSAEGYIDGKNDRRLDDCLRYCIVAGKKALEDADLGADISKKIDKERA 628
            MQ+LQSSSL ASP NPLR  SN     L  NARP  R+  SFI+AS ST SAPKRE DPKKRVVITGMGLVSVFGNDVDAYY KLL GESGI++IDRFDASKFPTRFGGQIRGFS+EGYIDGKN+RRLDDCL+YCIVAGKKALE A+LG D    IDK +A
Sbjct:    1 MQALQSSSLRASPPNPLRLPSNRQSHQLITNARPLRRQQRSFISASASTVSAPKRETDPKKRVVITGMGLVSVFGNDVDAYYEKLLSGESGISLIDRFDASKFPTRFGGQIRGFSSEGYIDGKNERRLDDCLKYCIVAGKKALESANLGGDKLNTIDKRKA 161          
BLAST of FC930106 vs. ExPASy Swiss-Prot
Match: KASC1_HORVU (3-oxoacyl-[acyl-carrier-protein] synthase I, chloroplastic OS=Hordeum vulgare GN=KAS12 PE=1 SV=1)

HSP 1 Score: 175.637 bits (444), Expect = 2.357e-43
Identity = 89/130 (68.46%), Postives = 105/130 (80.77%), Query Frame = 2
Query:  245 ARPTARRVSFITASSTKSAPKREKDPKKRVVITGMGLVSVFGNDVDAYYNKLLDGESGITMIDRFDASKFPTRFGGQIRGFSAEGYIDGKNDRRLDDCLRYCIVAGKKALEDADLGA--DISKKIDKERA 628
            ARP  R  + + A+S  +AP+RE DP+KRVVITGMGL SVFG+DVD +Y++LL GESG+  IDRFDAS FPTRF GQIRGFS+EGYIDGKNDRRLDDC+RYCI++GKKALE A LGA  D   K+D  RA
Sbjct:   23 ARPRRRPAAAVLATS--AAPQRETDPRKRVVITGMGLASVFGSDVDTFYDRLLAGESGVGPIDRFDASSFPTRFAGQIRGFSSEGYIDGKNDRRLDDCIRYCILSGKKALESAGLGAGSDAHVKLDVGRA 150          
BLAST of FC930106 vs. ExPASy Swiss-Prot
Match: FABF_BACSU (3-oxoacyl-[acyl-carrier-protein] synthase 2 OS=Bacillus subtilis GN=fabF PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.222e-17
Identity = 41/89 (46.07%), Postives = 60/89 (67.42%), Query Frame = 2
Query:  323 KKRVVITGMGLVSVFGNDVDAYYNKLLDGESGITMIDRFDASKFPTRFGGQIRGFSAEGYIDGKNDRRLDDCLRYCIVAGKKALEDADL 589
            KKRVV+TG+G +S  GNDVD  +N  ++G SGI  I R DA ++P +   +++ F+ E Y+D K  R++D   +Y +VA K A+EDADL
Sbjct:    3 KKRVVVTGLGALSPLGNDVDTSWNNAINGVSGIGPITRVDAEEYPAKVAAELKDFNVEDYMDKKEARKMDRFTQYAVVAAKMAVEDADL 91          
BLAST of FC930106 vs. ExPASy Swiss-Prot
Match: FABF_VIBCH (3-oxoacyl-[acyl-carrier-protein] synthase 2 OS=Vibrio cholerae GN=fabF PE=3 SV=3)

HSP 1 Score: 88.1965 bits (217), Expect = 4.950e-17
Identity = 42/89 (47.19%), Postives = 62/89 (69.66%), Query Frame = 2
Query:  323 KKRVVITGMGLVSVFGNDVDAYYNKLLDGESGITMIDRFDASKFPTRFGGQIRGFSAEGYIDGKNDRRLDDCLRYCIVAGKKALEDADL 589
            K+RVV+TGMG++S  GN V++ +  LL G+SGI  I+ FD + F TRF G ++GF  E Y+  K+ R++D  ++Y I AG +ALED+ L
Sbjct:    3 KRRVVVTGMGMLSPVGNTVESSWKALLAGQSGIVNIEHFDTTNFSTRFAGLVKGFDCEQYMSKKDARKMDLFIQYGIAAGIQALEDSGL 91          
BLAST of FC930106 vs. ExPASy Swiss-Prot
Match: FABF_SHIFL (3-oxoacyl-[acyl-carrier-protein] synthase 2 OS=Shigella flexneri GN=fabF PE=3 SV=2)

HSP 1 Score: 86.2705 bits (212), Expect = 1.881e-16
Identity = 39/89 (43.82%), Postives = 63/89 (70.79%), Query Frame = 2
Query:  323 KKRVVITGMGLVSVFGNDVDAYYNKLLDGESGITMIDRFDASKFPTRFGGQIRGFSAEGYIDGKNDRRLDDCLRYCIVAGKKALEDADL 589
            K+RVV+TG+G++S  GN V++ +  LL G+SGI++ID FD S + T+F G ++ F+ E  I  K  R++D  ++Y IVAG +A++D+ L
Sbjct:    3 KRRVVVTGLGMLSPVGNTVESTWKALLAGQSGISLIDHFDTSAYATKFAGLVKDFNCEDIISRKEQRKMDAFIQYGIVAGVQAMQDSGL 91          
BLAST of FC930106 vs. ExPASy Swiss-Prot
Match: FABF_ECOLI (3-oxoacyl-[acyl-carrier-protein] synthase 2 OS=Escherichia coli (strain K12) GN=fabF PE=1 SV=2)

HSP 1 Score: 86.2705 bits (212), Expect = 1.881e-16
Identity = 39/89 (43.82%), Postives = 63/89 (70.79%), Query Frame = 2
Query:  323 KKRVVITGMGLVSVFGNDVDAYYNKLLDGESGITMIDRFDASKFPTRFGGQIRGFSAEGYIDGKNDRRLDDCLRYCIVAGKKALEDADL 589
            K+RVV+TG+G++S  GN V++ +  LL G+SGI++ID FD S + T+F G ++ F+ E  I  K  R++D  ++Y IVAG +A++D+ L
Sbjct:    3 KRRVVVTGLGMLSPVGNTVESTWKALLAGQSGISLIDHFDTSAYATKFAGLVKDFNCEDIISRKEQRKMDAFIQYGIVAGVQAMQDSGL 91          
BLAST of FC930106 vs. ExPASy Swiss-Prot
Match: FABF_ECOL6 (3-oxoacyl-[acyl-carrier-protein] synthase 2 OS=Escherichia coli O6 GN=fabF PE=3 SV=2)

HSP 1 Score: 86.2705 bits (212), Expect = 1.881e-16
Identity = 39/89 (43.82%), Postives = 63/89 (70.79%), Query Frame = 2
Query:  323 KKRVVITGMGLVSVFGNDVDAYYNKLLDGESGITMIDRFDASKFPTRFGGQIRGFSAEGYIDGKNDRRLDDCLRYCIVAGKKALEDADL 589
            K+RVV+TG+G++S  GN V++ +  LL G+SGI++ID FD S + T+F G ++ F+ E  I  K  R++D  ++Y IVAG +A++D+ L
Sbjct:    3 KRRVVVTGLGMLSPVGNTVESTWKALLAGQSGISLIDHFDTSAYATKFAGLVKDFNCEDIISRKEQRKMDAFIQYGIVAGVQAMQDSGL 91          
BLAST of FC930106 vs. ExPASy Swiss-Prot
Match: FABF_ECO57 (3-oxoacyl-[acyl-carrier-protein] synthase 2 OS=Escherichia coli O157:H7 GN=fabF PE=3 SV=2)

HSP 1 Score: 86.2705 bits (212), Expect = 1.881e-16
Identity = 39/89 (43.82%), Postives = 63/89 (70.79%), Query Frame = 2
Query:  323 KKRVVITGMGLVSVFGNDVDAYYNKLLDGESGITMIDRFDASKFPTRFGGQIRGFSAEGYIDGKNDRRLDDCLRYCIVAGKKALEDADL 589
            K+RVV+TG+G++S  GN V++ +  LL G+SGI++ID FD S + T+F G ++ F+ E  I  K  R++D  ++Y IVAG +A++D+ L
Sbjct:    3 KRRVVVTGLGMLSPVGNTVESTWKALLAGQSGISLIDHFDTSAYATKFAGLVKDFNCEDIISRKEQRKMDAFIQYGIVAGVQAMQDSGL 91          
BLAST of FC930106 vs. ExPASy Swiss-Prot
Match: FABF_VIBHA (3-oxoacyl-[acyl-carrier-protein] synthase 2 OS=Vibrio harveyi GN=fabF PE=3 SV=2)

HSP 1 Score: 85.1149 bits (209), Expect = 4.190e-16
Identity = 40/89 (44.94%), Postives = 62/89 (69.66%), Query Frame = 2
Query:  323 KKRVVITGMGLVSVFGNDVDAYYNKLLDGESGITMIDRFDASKFPTRFGGQIRGFSAEGYIDGKNDRRLDDCLRYCIVAGKKALEDADL 589
            K+RVV+TGMG++S  GN V++ +  LL+G+SGI  I+ FDA+ F TRF G ++ F    Y+  K+ R++D  ++Y I AG +AL+D+ L
Sbjct:    3 KRRVVVTGMGMLSPVGNTVESSWKALLEGQSGIVNIEHFDATNFSTRFAGLVKDFDCTEYMSKKDARKMDLFIQYGIAAGIQALDDSGL 91          
BLAST of FC930106 vs. ExPASy Swiss-Prot
Match: FABF_SYNY3 (3-oxoacyl-[acyl-carrier-protein] synthase 2 OS=Synechocystis sp. (strain PCC 6803) GN=fabF PE=1 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.299e-14
Identity = 36/89 (40.45%), Postives = 57/89 (64.04%), Query Frame = 2
Query:  323 KKRVVITGMGLVSVFGNDVDAYYNKLLDGESGITMIDRFDASKFPTRFGGQIRGFSAEGYIDGKNDRRLDDCLRYCIVAGKKALEDADL 589
            KKRVV+TG+G ++  GN +  Y+  L++G +GI  I RFDAS    RFGG+++ F A  ++D K  +R+D    + + A ++A+ DA L
Sbjct:    6 KKRVVVTGLGAITPIGNTLQDYWQGLMEGRNGIGPITRFDASDQACRFGGEVKDFDATQFLDRKEAKRMDRFCHFAVCASQQAINDAKL 94          
The following BLAST results are available for this feature:
BLAST of FC930106 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 19
Match NameE-valueIdentityDescription
KASC1_ARATH8.065e-6077.023-oxoacyl-[acyl-carrier-protein] synthase I, chlor... [more]
KASC1_HORVU2.357e-4368.463-oxoacyl-[acyl-carrier-protein] synthase I, chlor... [more]
FABF_BACSU2.222e-1746.073-oxoacyl-[acyl-carrier-protein] synthase 2 OS=Bac... [more]
FABF_VIBCH4.950e-1747.193-oxoacyl-[acyl-carrier-protein] synthase 2 OS=Vib... [more]
FABF_SHIFL1.881e-1643.823-oxoacyl-[acyl-carrier-protein] synthase 2 OS=Shi... [more]
FABF_ECOLI1.881e-1643.823-oxoacyl-[acyl-carrier-protein] synthase 2 OS=Esc... [more]
FABF_ECOL61.881e-1643.823-oxoacyl-[acyl-carrier-protein] synthase 2 OS=Esc... [more]
FABF_ECO571.881e-1643.823-oxoacyl-[acyl-carrier-protein] synthase 2 OS=Esc... [more]
FABF_VIBHA4.190e-1644.943-oxoacyl-[acyl-carrier-protein] synthase 2 OS=Vib... [more]
FABF_SYNY32.299e-1440.453-oxoacyl-[acyl-carrier-protein] synthase 2 OS=Syn... [more]

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Properties
Property NameValue
Genbank descriptionC34003H02EF PostHarvC1 Citrus clementina cDNA clone C34003H02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930106 ID=FC930106; Name=FC930106; organism=Citrus clementina; type=EST; length=731bp
GACAGGGGCTGTGGCTTCTGCCTTCAAGCGTTTCATTTTTAATTCAATTT
CCCACTCACTAGTTAACAACTACTAACAGGACTCTCATCGTTTGCATCGC
CCACCTTCTTCTTCATTCATTCATTGTTGGCTCACTGAGGCATAACCTCA
AACAGAAAACATGCAATCTCTTCAATCCTCTTCTCTCCACGCGTCTCCAC
TAAACCCACTTCGCAGCAAATCCAACTTCAATCTCCCCAACAATGCGAGA
CCGACCGCAAGGAGAGTCTCCTTCATCACTGCTTCTTCAACCAAATCCGC
TCCCAAGCGGGAGAAGGACCCCAAGAAGCGCGTGGTGATCACGGGAATGG
GCTTGGTCTCCGTGTTTGGCAATGATGTCGATGCGTATTATAACAAGTTG
TTGGATGGTGAAAGTGGAATCACTATGATTGACCGGTTCGATGCTAGTAA
GTTCCCGACCCGGTTCGGCGGCCAGATCCGGGGATTTAGTGCCGAGGGTT
ATATTGATGGCAAGAATGATCGCAGACTTGATGATTGTTTGAGGTACTGC
ATTGTTGCTGGCAAGAAGGCTCTCGAAGATGCGGATCTCGGTGCCGATAT
TTCTAAGAAGATTGATAAGGAACGGGCTGGGGTTCTTGTGGGAACAGGAA
TGGGTGGTCTTACGTCTTTTCTGATGGAGTCAGGCTCTATAGAAAAGGTC
ATAGAAAATACCCGTTCTCATCCGTAGCTAT
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