FC930117

Overview
NameFC930117
Unique NameFC930117
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length729
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10758 contig Ccv1_Contig10758:23..751. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC930117 vs. ExPASy Swiss-Prot
Match: VA0D2_ARATH (V-type proton ATPase subunit d2 OS=Arabidopsis thaliana GN=VHA-D2 PE=2 SV=1)

HSP 1 Score: 442.195 bits (1136), Expect = 1.340e-123
Identity = 214/227 (94.27%), Postives = 221/227 (97.36%), Query Frame = 2
Query:   47 MYGFEAMTFNIHGGYLEAIVRGYRAGLLTAADYNNLCQCETLDDIKMHLSATEYGPYLQNEPSPLHTTTIVEKCTLKLVDEYKHMLCQATEPLSTFLEYITYGHMIDNVVLIVTGTLRERDVQELLEKCHPLGMFDSIATLAVAQNMRELYRLVLVDTPLAPYFSECITSEDLDDMNIEIMRNTLYKAYLEDFYKFCQKLGGATAEIMSDLLAFEADRRAVNTTINS 727
            MYGFEA+TFNIHGGYLEAIVRG+RAGLLT ADYNNLCQCE LDDIKMHLSAT+YGPYLQNEPSPLHTTTIVEKCTLKLVD+YKHMLCQATEP+STFLEYI YGHMIDNVVLIVTGTL ERDVQEL+EKCHPLGMFDSIATLAVAQNMRELYRLVLVDTPLAPYFSEC+TSEDLDDMNIEIMRNTLYKAYLEDFY FCQKLGGATAEIMSDLLAFEADRRAVN TINS
Sbjct:    1 MYGFEALTFNIHGGYLEAIVRGHRAGLLTTADYNNLCQCENLDDIKMHLSATKYGPYLQNEPSPLHTTTIVEKCTLKLVDDYKHMLCQATEPMSTFLEYIRYGHMIDNVVLIVTGTLHERDVQELIEKCHPLGMFDSIATLAVAQNMRELYRLVLVDTPLAPYFSECLTSEDLDDMNIEIMRNTLYKAYLEDFYNFCQKLGGATAEIMSDLLAFEADRRAVNITINS 227          
BLAST of FC930117 vs. ExPASy Swiss-Prot
Match: VA0D1_ARATH (V-type proton ATPase subunit d1 OS=Arabidopsis thaliana GN=VHA-D1 PE=2 SV=1)

HSP 1 Score: 441.039 bits (1133), Expect = 2.985e-123
Identity = 214/227 (94.27%), Postives = 221/227 (97.36%), Query Frame = 2
Query:   47 MYGFEAMTFNIHGGYLEAIVRGYRAGLLTAADYNNLCQCETLDDIKMHLSATEYGPYLQNEPSPLHTTTIVEKCTLKLVDEYKHMLCQATEPLSTFLEYITYGHMIDNVVLIVTGTLRERDVQELLEKCHPLGMFDSIATLAVAQNMRELYRLVLVDTPLAPYFSECITSEDLDDMNIEIMRNTLYKAYLEDFYKFCQKLGGATAEIMSDLLAFEADRRAVNTTINS 727
            MYGFEA+TFNIHGGYLEAIVRG+RAGLLT ADYNNLCQCE LDDIKMHLSAT+YG YLQNEPSPLHTTTIVEKCTLKLVD+YKHMLCQATEP+STFLEYI YGHMIDNVVLIVTGTL ERDVQEL+EKCHPLGMFDSIATLAVAQNMRELYRLVLVDTPLAPYFSEC+TSEDLDDMNIEIMRNTLYKAYLEDFYKFCQKLGGATAEIMSDLLAFEADRRAVN TINS
Sbjct:    1 MYGFEALTFNIHGGYLEAIVRGHRAGLLTTADYNNLCQCENLDDIKMHLSATKYGSYLQNEPSPLHTTTIVEKCTLKLVDDYKHMLCQATEPMSTFLEYIRYGHMIDNVVLIVTGTLHERDVQELIEKCHPLGMFDSIATLAVAQNMRELYRLVLVDTPLAPYFSECLTSEDLDDMNIEIMRNTLYKAYLEDFYKFCQKLGGATAEIMSDLLAFEADRRAVNITINS 227          
BLAST of FC930117 vs. ExPASy Swiss-Prot
Match: VA0D_ORYSJ (Probable V-type proton ATPase subunit d OS=Oryza sativa subsp. japonica GN=Os01g0587000 PE=2 SV=1)

HSP 1 Score: 429.483 bits (1103), Expect = 8.988e-120
Identity = 207/227 (91.19%), Postives = 219/227 (96.48%), Query Frame = 2
Query:   47 MYGFEAMTFNIHGGYLEAIVRGYRAGLLTAADYNNLCQCETLDDIKMHLSATEYGPYLQNEPSPLHTTTIVEKCTLKLVDEYKHMLCQATEPLSTFLEYITYGHMIDNVVLIVTGTLRERDVQELLEKCHPLGMFDSIATLAVAQNMRELYRLVLVDTPLAPYFSECITSEDLDDMNIEIMRNTLYKAYLEDFYKFCQKLGGATAEIMSDLLAFEADRRAVNTTINS 727
            MYG+E ++FNIH G+LEAIVRG R+GLLTAADYNNLCQCE LDD+KMHL+ATEYGPYLQNEPSPLHTTTIVEKCTLKLVDEYKHM+CQATEPLSTFL+YITYGHMIDNVVLIVTGTL ERDV ELLEKCHPLGMFDSIA+LAVAQNMRELYRLVLVDTPLAPYFSECITSEDLDDMNIEIMRNTLYKAYLEDFYKFC+KLGGATAEIM DLL+FEADRRAVN TINS
Sbjct:    1 MYGWEMLSFNIHDGFLEAIVRGNRSGLLTAADYNNLCQCENLDDVKMHLTATEYGPYLQNEPSPLHTTTIVEKCTLKLVDEYKHMMCQATEPLSTFLQYITYGHMIDNVVLIVTGTLHERDVNELLEKCHPLGMFDSIASLAVAQNMRELYRLVLVDTPLAPYFSECITSEDLDDMNIEIMRNTLYKAYLEDFYKFCEKLGGATAEIMCDLLSFEADRRAVNITINS 227          
BLAST of FC930117 vs. ExPASy Swiss-Prot
Match: VA0D_DICDI (V-type proton ATPase subunit d OS=Dictyostelium discoideum GN=vatD-1 PE=1 SV=2)

HSP 1 Score: 313.538 bits (802), Expect = 7.188e-85
Identity = 143/220 (65.00%), Postives = 182/220 (82.73%), Query Frame = 2
Query:   68 TFNIHGGYLEAIVRGYRAGLLTAADYNNLCQCETLDDIKMHLSATEYGPYLQNEPSPLHTTTIVEKCTLKLVDEYKHMLCQATEPLSTFLEYITYGHMIDNVVLIVTGTLRERDVQELLEKCHPLGMFDSIATLAVAQNMRELYRLVLVDTPLAPYFSECITSEDLDDMNIEIMRNTLYKAYLEDFYKFCQKLGGATAEIMSDLLAFEADRRAVNTTINS 727
            TFN   GYLEAI+RG++ G+L+ ADYNNLCQC+ L+D+KMH  +T+YG +L  EPSP+HTTTI EK T KLV E+ H+  QA EPLSTF+++I+YG+MIDNVVL++TGTL ERD+ EL++KCHPLG+F S+ATL+V  N+ +LY  VL+DTPLAPY   C++ EDLD+MNIEI+RNTLYKAYLEDFY +C+ LGG T  IMSD+L FEADRR++N TINS
Sbjct:   14 TFNKDDGYLEAILRGFKKGILSRADYNNLCQCDNLEDMKMHFISTDYGDFLAGEPSPIHTTTIAEKATGKLVSEFNHIRNQAVEPLSTFMDFISYGYMIDNVVLLITGTLHERDISELVDKCHPLGLFKSMATLSVVHNVADLYNNVLIDTPLAPYIQGCLSEEDLDEMNIEIIRNTLYKAYLEDFYNYCKYLGGQTELIMSDILKFEADRRSINITINS 233          
BLAST of FC930117 vs. ExPASy Swiss-Prot
Match: VA0D1_DROME (V-type proton ATPase subunit d 1 OS=Drosophila melanogaster GN=VhaAC39 PE=1 SV=1)

HSP 1 Score: 285.419 bits (729), Expect = 2.096e-76
Identity = 131/219 (59.82%), Postives = 170/219 (77.63%), Query Frame = 2
Query:   71 FNIHGGYLEAIVRGYRAGLLTAADYNNLCQCETLDDIKMHLSATEYGPYLQNEPSPLHTTTIVEKCTLKLVDEYKHMLCQATEPLSTFLEYITYGHMIDNVVLIVTGTLRERDVQELLEKCHPLGMFDSIATLAVAQNMRELYRLVLVDTPLAPYFSECITSEDLDDMNIEIMRNTLYKAYLEDFYKFCQKLGGATAEIMSDLLAFEADRRAVNTTINS 727
            FNI  GYLE + RG++ G+L  ADY NL QCETL+D+K+HL  T+YG +L NEPSPL  + I +K   KLV E++HM   A EPLS FL++ITYG+MIDN++L++TGTL +R + EL+ KCHPLG F+ +  + VA    ELY  VLVDTPLAP+F +CI+ +DLD+MNIEI+RNTLYKAYLE FY FC+ +GGATA++M ++LAFEADRRA+  TINS
Sbjct:    8 FNIDNGYLEGLCRGFKCGILKQADYLNLVQCETLEDLKLHLQGTDYGSFLANEPSPLSVSVIDDKLREKLVIEFQHMRNHAVEPLSNFLDFITYGYMIDNIILLITGTLHQRPISELIPKCHPLGSFEQMEAIHVASTPAELYNAVLVDTPLAPFFVDCISEQDLDEMNIEIIRNTLYKAYLEAFYNFCKNMGGATADVMCEILAFEADRRAIIITINS 226          
BLAST of FC930117 vs. ExPASy Swiss-Prot
Match: VA0D_MANSE (V-type proton ATPase subunit d OS=Manduca sexta PE=2 SV=1)

HSP 1 Score: 281.567 bits (719), Expect = 3.027e-75
Identity = 128/219 (58.45%), Postives = 171/219 (78.08%), Query Frame = 2
Query:   71 FNIHGGYLEAIVRGYRAGLLTAADYNNLCQCETLDDIKMHLSATEYGPYLQNEPSPLHTTTIVEKCTLKLVDEYKHMLCQATEPLSTFLEYITYGHMIDNVVLIVTGTLRERDVQELLEKCHPLGMFDSIATLAVAQNMRELYRLVLVDTPLAPYFSECITSEDLDDMNIEIMRNTLYKAYLEDFYKFCQKLGGATAEIMSDLLAFEADRRAVNTTINS 727
            FNI  GYLE + RG++ G+L  +DY NL QCETL+D+K+HL  T+YG +L NEPSPL  +TI +K   KLV E++H+   + EPLSTFL++ITY +MIDN++L++TGTL +R + EL+ KCHPLG F+ +  + VA    ELY  VLVDTPLAP+F +CI+ +DLD+MNIEI+RNTLYKAYLE FY FC+++GG TA++M ++LAFEADRRA+  TINS
Sbjct:    6 FNIDAGYLEGLCRGFKCGILKQSDYLNLVQCETLEDLKLHLQGTDYGTFLANEPSPLSVSTIDDKLREKLVIEFQHLRNHSVEPLSTFLDFITYSYMIDNIILLITGTLHQRPISELIPKCHPLGSFEQMEAIHVAATPAELYNAVLVDTPLAPFFVDCISEQDLDEMNIEIIRNTLYKAYLEAFYDFCKQIGGTTADVMCEILAFEADRRAIIITINS 224          
BLAST of FC930117 vs. ExPASy Swiss-Prot
Match: VA0D2_CHICK (V-type proton ATPase subunit d 2 OS=Gallus gallus GN=ATP6V0D2 PE=2 SV=1)

HSP 1 Score: 275.018 bits (702), Expect = 2.833e-73
Identity = 126/227 (55.51%), Postives = 169/227 (74.45%), Query Frame = 2
Query:   47 MYGFEAMTFNIHGGYLEAIVRGYRAGLLTAADYNNLCQCETLDDIKMHLSATEYGPYLQNEPSPLHTTTIVEKCTLKLVDEYKHMLCQATEPLSTFLEYITYGHMIDNVVLIVTGTLRERDVQELLEKCHPLGMFDSIATLAVAQNMRELYRLVLVDTPLAPYFSECITSEDLDDMNIEIMRNTLYKAYLEDFYKFCQKLGGATAEIMSDLLAFEADRRAVNTTINS 727
            M G+    FN+  GYLE +VRG++AG+LT+ADY NL QCETL+D+K+HL  T+YG +L NE  PL  +TI +K   KL+ E+ +    A EPL+TFL +ITY +MIDN++L++TGTL +R + EL+ KCHPLG F+ +  +++A N  EL+  +LVDTPLA +F +C++  DLD+MN+EIMRN LYK+YLE FYKFC+K GG TAEIM  +L FEADRRA   TINS
Sbjct:    1 MPGYSEFYFNVDHGYLEGLVRGFKAGILTSADYVNLAQCETLEDLKLHLQTTDYGNFLANESGPLTISTIDDKLKTKLLTEFHYFRNHAFEPLTTFLNFITYSYMIDNIILLITGTLHQRPIAELVPKCHPLGSFEQMEAVSIASNPTELFNAILVDTPLAAFFQDCLSENDLDEMNVEIMRNKLYKSYLEAFYKFCEKQGGTTAEIMKPILEFEADRRAFIITINS 227          
BLAST of FC930117 vs. ExPASy Swiss-Prot
Match: VA0D1_MOUSE (V-type proton ATPase subunit d 1 OS=Mus musculus GN=Atp6v0d1 PE=1 SV=2)

HSP 1 Score: 273.863 bits (699), Expect = 6.311e-73
Identity = 128/224 (57.14%), Postives = 169/224 (75.45%), Query Frame = 2
Query:   56 FEAMTFNIHGGYLEAIVRGYRAGLLTAADYNNLCQCETLDDIKMHLSATEYGPYLQNEPSPLHTTTIVEKCTLKLVDEYKHMLCQATEPLSTFLEYITYGHMIDNVVLIVTGTLRERDVQELLEKCHPLGMFDSIATLAVAQNMRELYRLVLVDTPLAPYFSECITSEDLDDMNIEIMRNTLYKAYLEDFYKFCQKLGGATAEIMSDLLAFEADRRAVNTTINS 727
            F  + FN+  GYLE +VRG +AG+L+ ADY NL QCETL+D+K+HL +T+YG +L NE SPL  + I +K   K+V E++HM   A EPL++FL++ITY +MIDNV+L++TGTL +R + EL+ KCHPLG F+ +  + +AQ   ELY  +LVDTPLA +F +CI+ +DLD+MNIEI+RNTLYKAYLE FYKFC  LGG TA+ M  +L FEADRRA   TINS
Sbjct:    4 FPELYFNVDNGYLEGLVRGLKAGVLSQADYLNLVQCETLEDLKLHLQSTDYGNFLANEASPLTVSVIDDKLKEKMVVEFRHMRNHAYEPLASFLDFITYSYMIDNVILLITGTLHQRSIAELVPKCHPLGSFEQMEAVNIAQTPAELYNAILVDTPLAAFFQDCISEQDLDEMNIEIIRNTLYKAYLESFYKFCTLLGGTTADAMCPILEFEADRRAFIITINS 227          
BLAST of FC930117 vs. ExPASy Swiss-Prot
Match: VA0D1_PONAB (V-type proton ATPase subunit d 1 OS=Pongo abelii GN=ATP6V0D1 PE=2 SV=1)

HSP 1 Score: 272.707 bits (696), Expect = 1.406e-72
Identity = 127/224 (56.70%), Postives = 169/224 (75.45%), Query Frame = 2
Query:   56 FEAMTFNIHGGYLEAIVRGYRAGLLTAADYNNLCQCETLDDIKMHLSATEYGPYLQNEPSPLHTTTIVEKCTLKLVDEYKHMLCQATEPLSTFLEYITYGHMIDNVVLIVTGTLRERDVQELLEKCHPLGMFDSIATLAVAQNMRELYRLVLVDTPLAPYFSECITSEDLDDMNIEIMRNTLYKAYLEDFYKFCQKLGGATAEIMSDLLAFEADRRAVNTTINS 727
            F  + FN+  GYLE +VRG +AG+L+ ADY NL QCETL+D+K+HL +T+YG +L NE SPL  + I ++   K+V E++HM   A EPL++FL++ITY +MIDNV+L++TGTL +R + EL+ KCHPLG F+ +  + +AQ   ELY  +LVDTPLA +F +CI+ +DLD+MNIEI+RNTLYKAYLE FYKFC  LGG TA+ M  +L FEADRRA   TINS
Sbjct:    4 FPELYFNVDNGYLEGLVRGLKAGVLSQADYLNLVQCETLEDLKLHLQSTDYGNFLANEASPLTVSVIDDRLKEKMVVEFRHMRNHAYEPLASFLDFITYSYMIDNVILLITGTLHQRSIAELVPKCHPLGSFEQMEAVNIAQTPAELYNAILVDTPLAAFFQDCISEQDLDEMNIEIIRNTLYKAYLESFYKFCTLLGGTTADAMCPILEFEADRRAFIITINS 227          
BLAST of FC930117 vs. ExPASy Swiss-Prot
Match: VA0D1_HUMAN (V-type proton ATPase subunit d 1 OS=Homo sapiens GN=ATP6V0D1 PE=1 SV=1)

HSP 1 Score: 272.707 bits (696), Expect = 1.406e-72
Identity = 127/224 (56.70%), Postives = 169/224 (75.45%), Query Frame = 2
Query:   56 FEAMTFNIHGGYLEAIVRGYRAGLLTAADYNNLCQCETLDDIKMHLSATEYGPYLQNEPSPLHTTTIVEKCTLKLVDEYKHMLCQATEPLSTFLEYITYGHMIDNVVLIVTGTLRERDVQELLEKCHPLGMFDSIATLAVAQNMRELYRLVLVDTPLAPYFSECITSEDLDDMNIEIMRNTLYKAYLEDFYKFCQKLGGATAEIMSDLLAFEADRRAVNTTINS 727
            F  + FN+  GYLE +VRG +AG+L+ ADY NL QCETL+D+K+HL +T+YG +L NE SPL  + I ++   K+V E++HM   A EPL++FL++ITY +MIDNV+L++TGTL +R + EL+ KCHPLG F+ +  + +AQ   ELY  +LVDTPLA +F +CI+ +DLD+MNIEI+RNTLYKAYLE FYKFC  LGG TA+ M  +L FEADRRA   TINS
Sbjct:    4 FPELYFNVDNGYLEGLVRGLKAGVLSQADYLNLVQCETLEDLKLHLQSTDYGNFLANEASPLTVSVIDDRLKEKMVVEFRHMRNHAYEPLASFLDFITYSYMIDNVILLITGTLHQRSIAELVPKCHPLGSFEQMEAVNIAQTPAELYNAILVDTPLAAFFQDCISEQDLDEMNIEIIRNTLYKAYLESFYKFCTLLGGTTADAMCPILEFEADRRAFIITINS 227          
The following BLAST results are available for this feature:
BLAST of FC930117 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 21
Match NameE-valueIdentityDescription
VA0D2_ARATH1.340e-12394.27V-type proton ATPase subunit d2 OS=Arabidopsis tha... [more]
VA0D1_ARATH2.985e-12394.27V-type proton ATPase subunit d1 OS=Arabidopsis tha... [more]
VA0D_ORYSJ8.988e-12091.19Probable V-type proton ATPase subunit d OS=Oryza s... [more]
VA0D_DICDI7.188e-8565.00V-type proton ATPase subunit d OS=Dictyostelium di... [more]
VA0D1_DROME2.096e-7659.82V-type proton ATPase subunit d 1 OS=Drosophila mel... [more]
VA0D_MANSE3.027e-7558.45V-type proton ATPase subunit d OS=Manduca sexta PE... [more]
VA0D2_CHICK2.833e-7355.51V-type proton ATPase subunit d 2 OS=Gallus gallus ... [more]
VA0D1_MOUSE6.311e-7357.14V-type proton ATPase subunit d 1 OS=Mus musculus G... [more]
VA0D1_PONAB1.406e-7256.70V-type proton ATPase subunit d 1 OS=Pongo abelii G... [more]
VA0D1_HUMAN1.406e-7256.70V-type proton ATPase subunit d 1 OS=Homo sapiens G... [more]

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Properties
Property NameValue
Genbank descriptionC34004A01EF PostHarvC1 Citrus clementina cDNA clone C34004A01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930117 ID=FC930117; Name=FC930117; organism=Citrus clementina; type=EST; length=729bp
GACATCACAACGAACAAACAATCGCACCGCTCTCTCATTCGCGAAGATGT
ACGGGTTCGAAGCGATGACGTTTAACATACACGGCGGATACTTGGAGGCG
ATCGTGAGGGGCTACCGTGCGGGGCTCTTGACGGCCGCCGATTACAACAA
TTTGTGCCAGTGCGAAACACTTGACGACATCAAGATGCACCTCTCCGCCA
CCGAATATGGTCCTTACCTCCAAAACGAACCTTCCCCATTGCATACTACA
ACAATTGTGGAGAAATGCACTCTGAAACTGGTTGATGAGTATAAGCACAT
GCTGTGCCAAGCCACTGAGCCCCTGTCAACATTTTTAGAGTATATCACAT
ATGGTCACATGATAGACAATGTTGTCTTGATTGTTACTGGAACCTTGCGT
GAGAGAGATGTTCAAGAACTGTTGGAGAAATGTCACCCTTTGGGCATGTT
TGACAGCATTGCTACACTGGCGGTTGCTCAGAACATGCGGGAGCTTTATA
GATTGGTGCTTGTTGACACACCATTAGCACCATACTTTTCTGAATGTATC
ACATCAGAGGACTTGGATGACATGAACATTGAAATAATGAGGAATACTCT
CTACAAGGCATACCTAGAAGACTTTTACAAGTTTTGTCAGAAACTGGGTG
GTGCAACAGCTGAGATCATGTCTGACCTTCTAGCTTTTGAGGCCGACAGA
AGAGCTGTCAATACCACCATAAACAGCGT
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